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The Scope, Functions, and Dynamics of Posttranslational Protein Modifications.

Millar AH, Heazlewood JL, Giglione C, Holdsworth MJ, Bachmair A, Schulze WX.

Annu Rev Plant Biol. 2019 Apr 29;70:119-151. doi: 10.1146/annurev-arplant-050718-100211. Epub 2019 Feb 20.


Revised nomenclature and functional overview of the ULP gene family of plant deSUMOylating proteases.

Castro PH, Bachmair A, Bejarano ER, Coupland G, Lois LM, Sadanandom A, van den Burg HA, Vierstra RD, Azevedo H.

J Exp Bot. 2018 Aug 31;69(19):4505-4509. doi: 10.1093/jxb/ery301. No abstract available.


Distinct branches of the N-end rule pathway modulate the plant immune response.

Vicente J, Mendiondo GM, Pauwels J, Pastor V, Izquierdo Y, Naumann C, Movahedi M, Rooney D, Gibbs DJ, Smart K, Bachmair A, Gray JE, Dissmeyer N, Castresana C, Ray RV, Gevaert K, Holdsworth MJ.

New Phytol. 2019 Jan;221(2):988-1000. doi: 10.1111/nph.15387. Epub 2018 Aug 17.


Sumoylation and phosphorylation: hidden and overt links.

Tomanov K, Nukarinen E, Vicente J, Mendiondo GM, Winter N, Nehlin L, Weckwerth W, Holdsworth MJ, Teige M, Bachmair A.

J Exp Bot. 2018 Aug 31;69(19):4583-4590. doi: 10.1093/jxb/ery167.


SUMO chain formation relies on the amino-terminal region of SUMO-conjugating enzyme and has dedicated substrates in plants.

Tomanov K, Nehlin L, Ziba I, Bachmair A.

Biochem J. 2018 Jan 2;475(1):61-74. doi: 10.1042/BCJ20170472.


Protein sumoylation and phosphorylation intersect in Arabidopsis signaling.

Nukarinen E, Tomanov K, Ziba I, Weckwerth W, Bachmair A.

Plant J. 2017 Aug;91(3):505-517. doi: 10.1111/tpj.13575. Epub 2017 Jun 4.


SUMO Chain Formation by Plant Enzymes.

Tomanov K, Ziba I, Bachmair A.

Methods Mol Biol. 2016;1450:97-105. doi: 10.1007/978-1-4939-3759-2_8.


SUMOylation represses SnRK1 signaling in Arabidopsis.

Crozet P, Margalha L, Butowt R, Fernandes N, Elias CA, Orosa B, Tomanov K, Teige M, Bachmair A, Sadanandom A, Baena-González E.

Plant J. 2016 Jan;85(1):120-133. doi: 10.1111/tpj.13096.


Extensive Analysis of GmFTL and GmCOL Expression in Northern Soybean Cultivars in Field Conditions.

Guo G, Xu K, Zhang X, Zhu J, Lu M, Chen F, Liu L, Xi ZY, Bachmair A, Chen Q, Fu YF.

PLoS One. 2015 Sep 15;10(9):e0136601. doi: 10.1371/journal.pone.0136601. eCollection 2015.


Expression and Purification of the Arabidopsis E4 SUMO Ligases PIAL1 and PIAL2.

Tomanov K, Bachmair A.

Bio Protoc. 2015 Aug 5;5(15). pii: e1544. doi: 10.21769/BioProtoc.1544.


Seedling Germination: Seedlings Follow Sunshine and Fresh Air.

Potuschak T, Bachmair A.

Curr Biol. 2015 Jun 29;25(13):R565-6. doi: 10.1016/j.cub.2015.05.001.


How cells coordinate waste removal through their major proteolytic pathways.

Martens S, Bachmair A.

Nat Cell Biol. 2015 Jul;17(7):841-2. doi: 10.1038/ncb3198.


Arabidopsis PIAL1 and 2 promote SUMO chain formation as E4-type SUMO ligases and are involved in stress responses and sulfur metabolism.

Tomanov K, Zeschmann A, Hermkes R, Eifler K, Ziba I, Grieco M, Novatchkova M, Hofmann K, Hesse H, Bachmair A.

Plant Cell. 2014 Nov;26(11):4547-60. doi: 10.1105/tpc.114.131300. Epub 2014 Nov 18. Erratum in: Plant Cell. 2016 May;28(5):1230.


Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.

Khan M, Rozhon W, Unterholzner SJ, Chen T, Eremina M, Wurzinger B, Bachmair A, Teige M, Sieberer T, Isono E, Poppenberger B.

Nat Commun. 2014 Aug 19;5:4687. doi: 10.1038/ncomms5687.


The eukaryotic N-end rule pathway: conserved mechanisms and diverse functions.

Gibbs DJ, Bacardit J, Bachmair A, Holdsworth MJ.

Trends Cell Biol. 2014 Oct;24(10):603-11. doi: 10.1016/j.tcb.2014.05.001. Epub 2014 May 26. Review.


Elevated salicylic acid levels conferred by increased expression of ISOCHORISMATE SYNTHASE 1 contribute to hyperaccumulation of SUMO1 conjugates in the Arabidopsis mutant early in short days 4.

Villajuana-Bonequi M, Elrouby N, Nordström K, Griebel T, Bachmair A, Coupland G.

Plant J. 2014 Jul;79(2):206-19. doi: 10.1111/tpj.12549. Epub 2014 Jun 23.


Ubiquitin Lys 63 chains - second-most abundant, but poorly understood in plants.

Tomanov K, Luschnig C, Bachmair A.

Front Plant Sci. 2014 Jan 31;5:15. doi: 10.3389/fpls.2014.00015. eCollection 2014. Review.


Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors.

Gibbs DJ, Md Isa N, Movahedi M, Lozano-Juste J, Mendiondo GM, Berckhan S, Marín-de la Rosa N, Vicente Conde J, Sousa Correia C, Pearce SP, Bassel GW, Hamali B, Talloji P, Tomé DF, Coego A, Beynon J, Alabadí D, Bachmair A, León J, Gray JE, Theodoulou FL, Holdsworth MJ.

Mol Cell. 2014 Feb 6;53(3):369-79. doi: 10.1016/j.molcel.2013.12.020. Epub 2014 Jan 23.


Benefit-of-doubt (BOD) scoring: a sequencing-based method for SNP candidate assessment from high to medium read number data sets.

Sedlazeck FJ, Talloji P, von Haeseler A, Bachmair A.

Genomics. 2013 Mar;101(3):204-9. doi: 10.1016/j.ygeno.2012.12.001. Epub 2012 Dec 12.


Small ubiquitin-like modifier conjugating enzyme with active site mutation acts as dominant negative inhibitor of SUMO conjugation in arabidopsis(F).

Tomanov K, Hardtke C, Budhiraja R, Hermkes R, Coupland G, Bachmair A.

J Integr Plant Biol. 2013 Jan;55(1):75-82. doi: 10.1111/jipb.12016.


Update on sumoylation: defining core components of the plant SUMO conjugation system by phylogenetic comparison.

Novatchkova M, Tomanov K, Hofmann K, Stuible HP, Bachmair A.

New Phytol. 2012 Jul;195(1):23-31. Review.


Lysine63-linked ubiquitylation of PIN2 auxin carrier protein governs hormonally controlled adaptation of Arabidopsis root growth.

Leitner J, Petrášek J, Tomanov K, Retzer K, Pařezová M, Korbei B, Bachmair A, Zažímalová E, Luschnig C.

Proc Natl Acad Sci U S A. 2012 May 22;109(21):8322-7. doi: 10.1073/pnas.1200824109. Epub 2012 May 3.


Deletion analysis of the 3' long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer.

Tramontano A, Donath A, Bernhart SH, Reiche K, Böhmdorfer G, Stadler PF, Bachmair A.

Virology. 2011 Mar 30;412(1):75-82. doi: 10.1016/j.virol.2010.12.059. Epub 2011 Jan 22.


Distinct roles for Arabidopsis SUMO protease ESD4 and its closest homolog ELS1.

Hermkes R, Fu YF, Nürrenberg K, Budhiraja R, Schmelzer E, Elrouby N, Dohmen RJ, Bachmair A, Coupland G.

Planta. 2011 Jan;233(1):63-73. doi: 10.1007/s00425-010-1281-z. Epub 2010 Oct 5.


A synthetic biology approach allows inducible retrotransposition in whole plants.

Böhmdorfer G, Tramontano A, Luxa K, Bachmair A.

Syst Synth Biol. 2010 Jun;4(2):133-8. doi: 10.1007/s11693-010-9053-4. Epub 2010 Mar 11.


The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis.

Holman TJ, Jones PD, Russell L, Medhurst A, Ubeda Tomás S, Talloji P, Marquez J, Schmuths H, Tung SA, Taylor I, Footitt S, Bachmair A, Theodoulou FL, Holdsworth MJ.

Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4549-54. doi: 10.1073/pnas.0810280106. Epub 2009 Mar 2.


Substrates related to chromatin and to RNA-dependent processes are modified by Arabidopsis SUMO isoforms that differ in a conserved residue with influence on desumoylation.

Budhiraja R, Hermkes R, Müller S, Schmidt J, Colby T, Panigrahi K, Coupland G, Bachmair A.

Plant Physiol. 2009 Mar;149(3):1529-40. doi: 10.1104/pp.108.135053. Epub 2009 Jan 16.


Repression of the floral transition via histone H2B monoubiquitination.

Gu X, Jiang D, Wang Y, Bachmair A, He Y.

Plant J. 2009 Feb;57(3):522-33. doi: 10.1111/j.1365-313X.2008.03709.x. Epub 2008 Oct 8.


Virus-like particle formation and translational start site choice of the plant retrotransposon Tto1.

Böhmdorfer G, Luxa K, Frosch A, Garber K, Tramontano A, Jelenic S, Weber M, Bachmair A.

Virology. 2008 Apr 10;373(2):437-46. doi: 10.1016/j.virol.2007.11.029. Epub 2008 Jan 8.


Ubiquitin lysine 63 chain forming ligases regulate apical dominance in Arabidopsis.

Yin XJ, Volk S, Ljung K, Mehlmer N, Dolezal K, Ditengou F, Hanano S, Davis SJ, Schmelzer E, Sandberg G, Teige M, Palme K, Pickart C, Bachmair A.

Plant Cell. 2007 Jun;19(6):1898-911. Epub 2007 Jun 22.


PRT6/At5g02310 encodes an Arabidopsis ubiquitin ligase of the N-end rule pathway with arginine specificity and is not the CER3 locus.

Garzón M, Eifler K, Faust A, Scheel H, Hofmann K, Koncz C, Yephremov A, Bachmair A.

FEBS Lett. 2007 Jul 10;581(17):3189-96. Epub 2007 Jun 12.


Expression of the ubiquitin variant ubR48 decreases proteolytic activity in Arabidopsis and induces cell death.

Schlögelhofer P, Garzón M, Kerzendorfer C, Nizhynska V, Bachmair A.

Planta. 2006 Mar;223(4):684-97. Epub 2005 Oct 1.


Lotus burttii takes a position of the third corner in the lotus molecular genetics triangle.

Kawaguchi M, Pedrosa-Harand A, Yano K, Hayashi M, Murooka Y, Saito K, Nagata T, Namai K, Nishida H, Shibata D, Sato S, Tabata S, Hayashi M, Harada K, Sandal N, Stougaard J, Bachmair A, Grant WF.

DNA Res. 2005 Feb 28;12(1):69-77.


Unorthodox mRNA start site to extend the highly structured leader of retrotransposon Tto1 mRNA increases transposition rate.

Böhmdorfer G, Hofacker IL, Garber K, Jelenic S, Nizhynska V, Hirochika H, Stadler PF, Bachmair A.

RNA. 2005 Aug;11(8):1181-91.


Proteins with two SUMO-like domains in chromatin-associated complexes: the RENi (Rad60-Esc2-NIP45) family.

Novatchkova M, Bachmair A, Eisenhaber B, Eisenhaber F.

BMC Bioinformatics. 2005 Feb 7;6:22.


Varshavsky's contributions.

Baumeister W, Bachmair A, Chau V, Cohen R, Coffino P, Demartino G, Deshaies R, Dohmen J, Emr S, Finley D, Hampton R, Hill C, Hochstrasser M, Huber R, Jackson P, Jentsch S, Johnson E, Kwon YT, Pagano M, Pickart C, Rechsteiner M, Scheffner M, Sommer T, Tansey W, Tyers M, Vierstra R, Weissman A, Wilkinson KD, Wolf D.

Science. 2004 Nov 19;306(5700):1290-2. No abstract available.


SUMO conjugation in plants.

Novatchkova M, Budhiraja R, Coupland G, Eisenhaber F, Bachmair A.

Planta. 2004 Nov;220(1):1-8. Epub 2004 Sep 23. Review.


Structural and evolutionary analysis of the transcribed sequence of Boudicca, a Schistosoma mansoni retrotransposon.

Copeland CS, Heyers O, Kalinna BH, Bachmair A, Stadler PF, Hofacker IL, Brindley PJ.

Gene. 2004 Mar 31;329:103-14.


Biochemical analysis of long terminal repeat retrotransposons.

Bachmair A, Garber K, Takeda S, Sugimoto K, Kakutani T, Hirochika H.

Methods Mol Biol. 2004;260:73-82.


PRT1 of Arabidopsis is a ubiquitin protein ligase of the plant N-end rule pathway with specificity for aromatic amino-terminal residues.

Stary S, Yin XJ, Potuschak T, Schlögelhofer P, Nizhynska V, Bachmair A.

Plant Physiol. 2003 Nov;133(3):1360-6. Epub 2003 Oct 9.


Integration of common bean ( Phaseolus vulgaris L.) linkage and chromosomal maps.

Pedrosa A, Vallejos CE, Bachmair A, Schweizer D.

Theor Appl Genet. 2003 Jan;106(2):205-12. Epub 2002 Oct 31.


A genetic linkage map of the model legume Lotus japonicus and strategies for fast mapping of new loci.

Sandal N, Krusell L, Radutoiu S, Olbryt M, Pedrosa A, Stracke S, Sato S, Kato T, Tabata S, Parniske M, Bachmair A, Ketelsen T, Stougaard J.

Genetics. 2002 Aug;161(4):1673-83.


Chromosomal map of the model legume Lotus japonicus.

Pedrosa A, Sandal N, Stougaard J, Schweizer D, Bachmair A.

Genetics. 2002 Aug;161(4):1661-72.


The upstream Sal repeat-containing segment of Arabidopsis thaliana ribosomal DNA intergenic region (IGR) enhances the activity of adjacent protein-coding genes.

Schlögelhofer P, Nizhynska V, Feik N, Chambon C, Potuschak T, Wanzenböck EM, Schweizer D, Bachmair A.

Plant Mol Biol. 2002 Aug;49(6):655-67.


Construction of a genetic linkage map of the model legume Lotus japonicus using an intraspecific F2 population.

Hayashi M, Miyahara A, Sato S, Kato T, Yoshikawa M, Taketa M, Hayashi M, Pedrosa A, Onda R, Imaizumi-Anraku H, Bachmair A, Sandal N, Stougaard J, Murooka Y, Tabata S, Kawasaki S, Kawaguchi M, Harada K.

DNA Res. 2001 Dec 31;8(6):301-10.


Ubiquitylation in plants: a post-genomic look at a post-translational modification.

Bachmair A, Novatchkova M, Potuschak T, Eisenhaber F.

Trends Plant Sci. 2001 Oct;6(10):463-70. Review.


The Tpv2 family of retrotransposons of Phaseolus vulgaris: structure, integration characteristics, and use for genotype classification.

Garber K, Bilic I, Pusch O, Tohme J, Bachmair A, Schweizer D, Jantsch V.

Plant Mol Biol. 1999 Mar;39(4):797-807.


Tobacco plants perturbed in the ubiquitin-dependent protein degradation system accumulate callose, salicylic acid, and pathogenesis-related protein 1.

Conrath U, Klessig DF, Bachmair A.

Plant Cell Rep. 1998 Aug;17(11):876-880. doi: 10.1007/s002990050501.


PRT1 of Arabidopsis thaliana encodes a component of the plant N-end rule pathway.

Potuschak T, Stary S, Schlögelhofer P, Becker F, Nejinskaia V, Bachmair A.

Proc Natl Acad Sci U S A. 1998 Jul 7;95(14):7904-8.

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