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Items: 13

1.

Gene Regulatory Networks from Single Cell Data for Exploring Cell Fate Decisions.

Chan TE, Stumpf MPH, Babtie AC.

Methods Mol Biol. 2019;1975:211-238. doi: 10.1007/978-1-4939-9224-9_10.

PMID:
31062312
2.

Stem Cell Differentiation as a Non-Markov Stochastic Process.

Stumpf PS, Smith RCG, Lenz M, Schuppert A, Müller FJ, Babtie A, Chan TE, Stumpf MPH, Please CP, Howison SD, Arai F, MacArthur BD.

Cell Syst. 2017 Sep 27;5(3):268-282.e7. doi: 10.1016/j.cels.2017.08.009.

3.

Gene Regulatory Network Inference from Single-Cell Data Using Multivariate Information Measures.

Chan TE, Stumpf MPH, Babtie AC.

Cell Syst. 2017 Sep 27;5(3):251-267.e3. doi: 10.1016/j.cels.2017.08.014.

4.

How to deal with parameters for whole-cell modelling.

Babtie AC, Stumpf MPH.

J R Soc Interface. 2017 Aug;14(133). pii: 20170237. doi: 10.1098/rsif.2017.0237. Epub 2017 Aug 2. Review.

5.

Model of Host-Pathogen Interaction Dynamics Links In Vivo Optical Imaging and Immune Responses.

Ale A, Crepin VF, Collins JW, Constantinou N, Habibzay M, Babtie AC, Frankel G, Stumpf MPH.

Infect Immun. 2016 Dec 29;85(1). pii: e00606-16. doi: 10.1128/IAI.00606-16. Print 2017 Jan.

6.

MEANS: python package for Moment Expansion Approximation, iNference and Simulation.

Fan S, Geissmann Q, Lakatos E, Lukauskas S, Ale A, Babtie AC, Kirk PD, Stumpf MP.

Bioinformatics. 2016 Sep 15;32(18):2863-5. doi: 10.1093/bioinformatics/btw229. Epub 2016 May 5.

7.

SYSTEMS BIOLOGY. Systems biology (un)certainties.

Kirk PD, Babtie AC, Stumpf MP.

Science. 2015 Oct 23;350(6259):386-8. doi: 10.1126/science.aac9505. No abstract available.

PMID:
26494748
8.

Topological sensitivity analysis for systems biology.

Babtie AC, Kirk P, Stumpf MP.

Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18507-12. doi: 10.1073/pnas.1414026112. Epub 2014 Dec 15.

9.

Kinetic and computational evidence for an intermediate in the hydrolysis of sulfonate esters.

Babtie AC, Lima MF, Kirby AJ, Hollfelder F.

Org Biomol Chem. 2012 Oct 28;10(40):8095-101.

PMID:
22832951
10.

An efficient, multiply promiscuous hydrolase in the alkaline phosphatase superfamily.

van Loo B, Jonas S, Babtie AC, Benjdia A, Berteau O, Hyvönen M, Hollfelder F.

Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2740-5. doi: 10.1073/pnas.0903951107. Epub 2010 Jan 27.

11.

What makes an enzyme promiscuous?

Babtie A, Tokuriki N, Hollfelder F.

Curr Opin Chem Biol. 2010 Apr;14(2):200-7. doi: 10.1016/j.cbpa.2009.11.028. Epub 2010 Jan 18. Review.

PMID:
20080434
12.

Simultaneous determination of gene expression and enzymatic activity in individual bacterial cells in microdroplet compartments.

Shim JU, Olguin LF, Whyte G, Scott D, Babtie A, Abell C, Huck WT, Hollfelder F.

J Am Chem Soc. 2009 Oct 28;131(42):15251-6. doi: 10.1021/ja904823z.

PMID:
19799429
13.

Efficient catalytic promiscuity for chemically distinct reactions.

Babtie AC, Bandyopadhyay S, Olguin LF, Hollfelder F.

Angew Chem Int Ed Engl. 2009;48(20):3692-4. doi: 10.1002/anie.200805843.

PMID:
19373810

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