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Comments on design and monitoring of survival trials in complex scenarios.

Barthel FM, Babiker A, Royston P, Parmar MK.

Stat Med. 2019 Jun 30;38(14):2704. doi: 10.1002/sim.8087. No abstract available.


Effect estimates in randomized trials and observational studies: comparing apples with apples.

Lodi S, Phillips A, Lundgren J, Logan R, Sharma S, Cole SR, Babiker A, Law M, Chu H, Byrne D, Horban A, Sterne JAC, Porter K, Sabin C, Costagliola D, Abgrall S, Gill J, Touloumi G, Pacheco AG, van Sighem A, Reiss P, Bucher HC, Montoliu Giménez A, Jarrin I, Wittkop L, Meyer L, Perez-Hoyos S, Justice A, Neaton JD, Hernán MA; INSIGHT START Study Group and the HIV-CAUSAL Collaboration.

Am J Epidemiol. 2019 May 7. pii: kwz100. doi: 10.1093/aje/kwz100. [Epub ahead of print]


Practice implications of an antimicrobial stewardship intervention in a tertiary care teaching hospital, Qatar.

Nasr Z, Babiker A, Elbasheer M, Osman A, Elazzazy S, Wilby KJ.

East Mediterr Health J. 2019 Apr 25;25(3):172-180. doi: 10.26719/emhj.18.026.


Rasamsonia sp: An emerging infection amongst chronic granulomatous disease patients. A case of disseminated infection by a putatively novel Rasamsonia argillacea species complex involving the heart.

Babiker A, Gupta N, Gibas CFC, Wiederhold NP, Sanders C, Mele J, Fan H, Iovleva A, Haidar G, Fernandes C.

Med Mycol Case Rep. 2019 Apr 16;24:54-57. doi: 10.1016/j.mmcr.2019.04.002. eCollection 2019 Jun.


The use of Online Tools for Antimicrobial Resistance Prediction by Whole Genome Sequencing in MRSA and VRE.

Babiker A, Mustapha MM, Pacey MP, Shutt KA, Ezeonwuka CD, Ohm SL, Cooper VS, Marsh JW, Doi Y, Harrison LH.

J Glob Antimicrob Resist. 2019 Apr 18. pii: S2213-7165(19)30095-5. doi: 10.1016/j.jgar.2019.04.006. [Epub ahead of print]


Comparison of the Microwave-Heated Ziehl-Neelsen Stain and Conventional Ziehl-Neelsen Method in the Detection of Acid-Fast Bacilli in Lymph Node Biopsies.

Ahmed GM, Mohammed ASA, Taha AA, Almatroudi A, Allemailem KS, Babiker AY, Alsammani MA.

Open Access Maced J Med Sci. 2019 Mar 24;7(6):903-907. doi: 10.3889/oamjms.2019.215. eCollection 2019 Mar 30.


Impact of a Collaborative Pharmaceutical Care Service Among Patients With Diabetes in an Ambulatory Care Setting in Qatar: A Multiple Time Series Study.

Abdulrhim SH, Saleh RA, Mohamed Hussain MA, Al Raey H, Babiker AH, Kheir N, Awaisu A.

Value Health Reg Issues. 2019 Mar 12;19:45-50. doi: 10.1016/j.vhri.2018.12.002. [Epub ahead of print]


Thymoquinone, an Active Constituent of Black Seed Attenuates CCl4 Induced Liver Injury in Mice via Modulation of Antioxidant Enzymes, PTEN, P53 and VEGF Protein.

Rahmani AH, Almatroudi A, Babiker AY, Khan AA, Alsahli MA.

Open Access Maced J Med Sci. 2019 Feb 4;7(3):311-317. doi: 10.3889/oamjms.2019.050. eCollection 2019 Feb 15.


Body composition and adipokines changes after initial treatment with darunavir-ritonavir plus either raltegravir or tenofovir disoproxil fumarate-emtricitabine: A substudy of the NEAT001/ANRS143 randomised trial.

Bernardino JI, Mocroft A, Wallet C, de Wit S, Katlama C, Reiss P, Mallon PW, Richert L, Molina JM, Knobel H, Morlat P, Babiker A, Pozniac A, Raffi F, Arribas JR; NEAT001/ANRS143 Trial Study Group.

PLoS One. 2019 Jan 28;14(1):e0209911. doi: 10.1371/journal.pone.0209911. eCollection 2019.


A child with perinatal HIV infection and long-term sustained virological control following antiretroviral treatment cessation.

Violari A, Cotton MF, Kuhn L, Schramm DB, Paximadis M, Loubser S, Shalekoff S, Da Costa Dias B, Otwombe K, Liberty A, McIntyre J, Babiker A, Gibb D, Tiemessen CT.

Nat Commun. 2019 Jan 24;10(1):412. doi: 10.1038/s41467-019-08311-0.


Risk factors of metabolic syndrome among adult Sudanese sickle cell anemia patients.

Babiker AO, Kaddam LA.

BMC Hematol. 2018 Dec 27;18:38. doi: 10.1186/s12878-018-0110-7. eCollection 2018.


Presentation, Management, and Outcomes of Acute Stroke in Palestine.

Khatib R, Jawaadah AM, Khammash U, Babiker A, Huffman MD, Prabhakaran S.

J Am Heart Assoc. 2018 Nov 20;7(22):e010778. doi: 10.1161/JAHA.118.010778.


Assessment of Expression of Ki-67 in Benign and Malignant Prostatic Lesions among Sudanese Patients.

Mohamed AA, Abbas MY, Alharbi H, Babiker AY.

Open Access Maced J Med Sci. 2018 Oct 20;6(10):1809-1812. doi: 10.3889/oamjms.2018.309. eCollection 2018 Oct 25.


Virological remission after antiretroviral therapy interruption in female African HIV seroconverters.

Gossez M, Martin GE, Pace M, Ramjee G, Premraj A, Kaleebu P, Rees H, Inshaw J, Stöhr W, Meyerowitz J, Hopkins E, Jones M, Hurst J, Porter K, Babiker A, Fidler S, Frater J; SPARTAC Trial Investigators.

AIDS. 2019 Feb 1;33(2):185-197. doi: 10.1097/QAD.0000000000002044.


Naive B Cell Output in HIV-Infected and HIV-Uninfected Children.

Payne H, Chain G, Adams S, Hunter P, Luckhurst N, Gilmour K, Lewis J, Babiker A, Cotton M, Violari A, Gibb D, Callard R, Klein N.

AIDS Res Hum Retroviruses. 2019 Jan;35(1):33-39. doi: 10.1089/AID.2018.0170. Epub 2018 Dec 26.


Early and Highly Suppressive Antiretroviral Therapy Are Main Factors Associated With Low Viral Reservoir in European Perinatally HIV-Infected Children.

Tagarro A, Chan M, Zangari P, Ferns B, Foster C, De Rossi A, Nastouli E, Muñoz-Fernández MA, Gibb D, Rossi P, Giaquinto C, Babiker A, Fortuny C, Freguja R, Cotugno N, Judd A, Noguera-Julian A, Navarro ML, Mellado MJ, Klein N, Palma P, Rojo P.

J Acquir Immune Defic Syndr. 2018 Oct 1;79(2):269-276. doi: 10.1097/QAI.0000000000001789.


Inborn errors of metabolism associated with hyperglycaemic ketoacidosis and diabetes mellitus: narrative review.

Alfadhel M, Babiker A.

Sudan J Paediatr. 2018;18(1):10-23. doi: 10.24911/SJP.2018.1.3. Review.


Bartonella Infectious Endocarditis Associated With Cryoglobulinemia and Multifocal Proliferative Glomerulonephritis.

Babiker A, El Hag MI, Perez C.

Open Forum Infect Dis. 2018 Jul 27;5(8):ofy186. doi: 10.1093/ofid/ofy186. eCollection 2018 Aug.


Ibrutinib Therapy and Mycobacterium chelonae Skin and Soft Tissue Infection.

Dousa KM, Babiker A, Van Aartsen D, Shah N, Bonomo RA, Johnson JL, Skalweit MJ.

Open Forum Infect Dis. 2018 Jul 18;5(7):ofy168. doi: 10.1093/ofid/ofy168. eCollection 2018 Jul.


Seroprevalence of maternal HIV, hepatitis B, and syphilis in a major maternity hospital in North Kordofan, Sudan.

Elkheir SM, Babiker ZO, Elamin SK, Yassin MI, Awadalla KE, Bealy MA, Agab Eldour AA, Alloba FE, Atabani SF, Osman HK, Babiker AG, Herieka EA.

Int J STD AIDS. 2018 Nov;29(13):1330-1336. doi: 10.1177/0956462418784687. Epub 2018 Jul 27.


Effect of Exposure to Cement Dust among the Workers: An Evaluation of Health Related Complications.

Rahmani AH, Almatroudi A, Babiker AY, Khan AA, Alsahly MA.

Open Access Maced J Med Sci. 2018 Jun 13;6(6):1159-1162. doi: 10.3889/oamjms.2018.233. eCollection 2018 Jun 20.


Early and Highly Suppressive ART are Main Factors Associated with Low Viral Reservoir in European Perinatally HIV Infected Children.

Tagarro A, Chan M, Zangari P, Ferns B, Foster C, De Rossi A, Nastouli E, Muñoz-Fernández MA, Gibb D, Rossi P, Giaquinto C, Babiker A, Fortuny C, Freguja R, Cotugno N, Judd A, Noguera-Julian A, Navarro ML, Mellado MJ, Klein N, Palma P, Rojo P; EPIICAL Consortium.

J Acquir Immune Defic Syndr. 2018 Jun 26. doi: 10.1097/QAI.0000000000001789. [Epub ahead of print]


Five year neurodevelopment outcomes of perinatally HIV-infected children on early limited or deferred continuous antiretroviral therapy.

Laughton B, Cornell M, Kidd M, Springer PE, Dobbels EFM, Rensburg AJV, Otwombe K, Babiker A, Gibb DM, Violari A, Kruger M, Cotton MF.

J Int AIDS Soc. 2018 May;21(5):e25106. doi: 10.1002/jia2.25106.


Weekends-off efavirenz-based antiretroviral therapy in HIV-infected children, adolescents and young adults (BREATHER): Extended follow-up results of a randomised, open-label, non-inferiority trial.

Turkova A, Moore CL, Butler K, Compagnucci A, Saïdi Y, Musiime V, Nanduudu A, Kaudha E, Cressey TR, Chalermpantmetagul S, Scott K, Harper L, Montero S, Riault Y, Bunupuradah T, Volokha A, Flynn PM, Bologna R, Ramos Amador JT, Welch SB, Nastouli E, Klein N, Giaquinto C, Ford D, Babiker A, Gibb DM; BREATHER (PENTA 16) trial Group.

PLoS One. 2018 Apr 23;13(4):e0196239. doi: 10.1371/journal.pone.0196239. eCollection 2018.


Reply to Jacob and Colebunders.

Ellenberg SS, Keusch GT, Babiker AG, Edwards KM, Lewis RJ, Lundgren JD, Wells CD, Wabwire-Mangen F, McAdam KPWJ.

Clin Infect Dis. 2018 Aug 31;67(6):985-986. doi: 10.1093/cid/ciy250. No abstract available.


Report from the First EPIICAL (Early-treated Perinatally HIV-infected Individuals: Improving Children's Actual Life with Novel Immunotherapeutic Strategies) General Assembly meeting, 9-11 November 2017, Rome, Italy.

Zangari P, Palma P, Cotugno N, Rojo P, Tagarro A, Pepponi I, De Rossi A, Kuhn L, Pahwa S, Cameron M, Nastouli E, Watters S, Marceline AG, McCoy LE, Persaud D, Violari A, Chan M, Babiker AG, Foster C, Ananworanich J, Giaquinto C, Rossi P.

J Virus Erad. 2018 Jan 1;4(1):51-54. No abstract available.


Prognostic Significance of Vascular Endothelial Growth Factor (VEGF) and Her-2 Protein in the Genesis of Cervical Carcinoma.

Rahmani AH, Babiker AY, Alsahli MA, Almatroodi SA, Husain NEOS.

Open Access Maced J Med Sci. 2018 Feb 10;6(2):263-268. doi: 10.3889/oamjms.2018.089. eCollection 2018 Feb 15.


Histopathological Pattern and Age Distribution, of Malignant Ovarian Tumor among Sudanese Ladies.

Kheiri SA, Kunna A, Babiker AY, Alsuhaibani SA, Ahmed RY, Alsammani MA.

Open Access Maced J Med Sci. 2018 Feb 12;6(2):237-241. doi: 10.3889/oamjms.2018.067. eCollection 2018 Feb 15.


Lactate clearance as a prognostic marker of mortality in severely ill febrile children in East Africa.

Aramburo A, Todd J, George EC, Kiguli S, Olupot-Olupot P, Opoka RO, Engoru C, Akech SO, Nyeko R, Mtove G, Gibb DM, Babiker AG, Maitland K.

BMC Med. 2018 Mar 9;16(1):37. doi: 10.1186/s12916-018-1014-x.


Genetic variation in Sorghum bicolor strigolactones and their role in resistance against Striga hermonthica.

Mohemed N, Charnikhova T, Fradin EF, Rienstra J, Babiker AGT, Bouwmeester HJ.

J Exp Bot. 2018 Apr 23;69(9):2415-2430. doi: 10.1093/jxb/ery041.


Economic evaluation of weekends-off antiretroviral therapy for young people in 11 countries.

Tierrablanca LE, Ochalek J, Ford D, Babiker A, Gibb D, Butler K, Turkova A, Griffin S, Revill P; BREATHER (PENTA 16) Trial Group.

Medicine (Baltimore). 2018 Feb;97(5):e9698. doi: 10.1097/MD.0000000000009698. Erratum in: Medicine (Baltimore). 2018 Feb;97(7):e0012.


Systemic Inflammation, Coagulation, and Clinical Risk in the START Trial.

Baker JV, Sharma S, Grund B, Rupert A, Metcalf JA, Schechter M, Munderi P, Aho I, Emery S, Babiker A, Phillips A, Lundgren JD, Neaton JD, Lane HC; INSIGHT START (Strategic Timing of AntiRetroviral Treatment) Study Group.

Open Forum Infect Dis. 2017 Nov 28;4(4):ofx262. doi: 10.1093/ofid/ofx262. eCollection 2017 Fall.


Failure Mode and Effect Analysis (FMEA) may enhance implementation of clinical practice guidelines: An experience from the Middle East.

Babiker A, Amer YS, Osman ME, Al-Eyadhy A, Fatani S, Mohamed S, Alnemri A, Titi MA, Shaikh F, Alswat KA, Wahabi HA, Al-Ansary LA.

J Eval Clin Pract. 2018 Feb;24(1):206-211. doi: 10.1111/jep.12873. Epub 2017 Dec 29.


Predictors of CD4 cell recovery following initiation of antiretroviral therapy among HIV-1 positive patients with well-estimated dates of seroconversion.

Stirrup OT, Copas AJ, Phillips AN, Gill MJ, Geskus RB, Touloumi G, Young J, Bucher HC, Babiker AG; CASCADE Collaboration in EuroCoord.

HIV Med. 2018 Mar;19(3):184-194. doi: 10.1111/hiv.12567. Epub 2017 Dec 1.


Risk of Cardiovascular Disease Due to Chronic Hepatitis C Infection: A Review.

Babiker A, Jeudy J, Kligerman S, Khambaty M, Shah A, Bagchi S.

J Clin Transl Hepatol. 2017 Dec 28;5(4):343-362. doi: 10.14218/JCTH.2017.00021. Epub 2017 Aug 31. Review.


Pituitary imaging in 129 children with growth hormone deficiency: A spectrum of findings.

AlJurayyan RNA, AlJurayyan NAM, Omer HG, Alissa SDA, AlOtaibi HMN, AlKhalifah RAH, Babiker AMI, Mohamed S.

Sudan J Paediatr. 2017;17(1):30-35.


Precocious puberty: An experience from a major teaching hospital in Central Saudi Arabia.

Osman HA, Al-Jurayyan NAM, Babiker AMI, Al-Otaibi HMN, AlKhalifah RDH, Al Issa SDA, Mohamed S.

Sudan J Paediatr. 2017;17(1):19-24.


Rigorous Clinical Trial Design in Public Health Emergencies Is Essential.

Ellenberg SS, Keusch GT, Babiker AG, Edwards KM, Lewis RJ, Lundgren JD, Wells CD, Wabwire-Mangen F, McAdam KPWJ.

Clin Infect Dis. 2018 Apr 17;66(9):1467-1469. doi: 10.1093/cid/cix1032.


Impact of intercurrent illness on calcium homeostasis in children with hypoparathyroidism: a case series.

Chinoy A, Skae M, Babiker A, Kendall D, Mughal MZ, Padidela R.

Endocr Connect. 2017 Nov;6(8):589-594. doi: 10.1530/EC-17-0234.


Thymic Output and CD4 T-Cell Reconstitution in HIV-Infected Children on Early and Interrupted Antiretroviral Treatment: Evidence from the Children with HIV Early Antiretroviral Therapy Trial.

Lewis J, Payne H, Walker AS, Otwombe K, Gibb DM, Babiker AG, Panchia R, Cotton MF, Violari A, Klein N, Callard RE.

Front Immunol. 2017 Sep 20;8:1162. doi: 10.3389/fimmu.2017.01162. eCollection 2017.


A multicenter clinical exome study in unselected cohorts from a consanguineous population of Saudi Arabia demonstrated a high diagnostic yield.

Alfares A, Alfadhel M, Wani T, Alsahli S, Alluhaydan I, Al Mutairi F, Alothaim A, Albalwi M, Al Subaie L, Alturki S, Al-Twaijri W, Alrifai M, Al-Rumayya A, Alameer S, Faqeeh E, Alasmari A, Alsamman A, Tashkandia S, Alghamdi A, Alhashem A, Tabarki B, AlShahwan S, Hundallah K, Wali S, Al-Hebbi H, Babiker A, Mohamed S, Eyaid W, Zada AAP.

Mol Genet Metab. 2017 Jun;121(2):91-95. doi: 10.1016/j.ymgme.2017.04.002. Epub 2017 Apr 7. No abstract available.


A randomized trial comparing concise and standard consent forms in the START trial.

Grady C, Touloumi G, Walker AS, Smolskis M, Sharma S, Babiker AG, Pantazis N, Tavel J, Florence E, Sanchez A, Hudson F, Papadopoulos A, Emanuel E, Clewett M, Munroe D, Denning E; INSIGHT START Informed Consent Substudy Group.

PLoS One. 2017 Apr 26;12(4):e0172607. doi: 10.1371/journal.pone.0172607. eCollection 2017.


High Frequency of Blackwater Fever Among Children Presenting to Hospital With Severe Febrile Illnesses in Eastern Uganda.

Olupot-Olupot P, Engoru C, Uyoga S, Muhindo R, Macharia A, Kiguli S, Opoka RO, Akech S, Ndila C, Nyeko R, Mtove G, Nteziyaremye J, Chebet M, George EC, Babiker AG, Gibb DM, Williams TN, Maitland K.

Clin Infect Dis. 2017 Apr 1;64(7):939-946. doi: 10.1093/cid/cix003.


Autoimmune thyroiditis associated with Sanjad-Sakati syndrome: A call for regular thyroid screening.

Anteet AM, Al Issa ST, Al-Ali AO, Al-Otaibi HM, Mohamed S, Babiker A, Al-Jurayyan NA.

Sudan J Paediatr. 2016;16(2):41-44.


Glycogenic hepatopathy, an underdiagnosed cause of relapsing hepatitis in uncontrolled type 1 diabetes mellitus.

Al Sarkhy AA, Zaidi ZA, Babiker AM.

Saudi Med J. 2017 Jan;38(1):89-92. doi: 10.15537/smj.2017.1.15934.


Epidemiology of Drug-resistant Tuberculosis in a Tertiary Care Center in Oman, 2006-2015.

Gaifer Z, Babiker A, Rizavi D.

Oman Med J. 2017 Jan;32(1):36-40. doi: 10.5001/omj.2017.07.


Severe desquamation in Kawasaki disease: Is it somehow protective?

Alqanatish JT, Babiker A.

Sudan J Paediatr. 2017;17(2):56-59. doi: 10.24911/SJP.2017.2.7.


Anti-diabetic medications: How to make a choice?

Babiker A, Al Dubayee M.

Sudan J Paediatr. 2017;17(2):11-20. doi: 10.24911/SJP.2017.2.12. Review.


Reply to Meijide et al.

Borges ÁH, Neuhaus J, Babiker A, Wilkin T, Mitsuyasu R.

Clin Infect Dis. 2017 Feb 1;64(3):389-390. doi: 10.1093/cid/ciw760. Epub 2016 Nov 14. No abstract available.


Early Antiretroviral Therapy at High CD4 Counts Does Not Improve Arterial Elasticity: A Substudy of the Strategic Timing of AntiRetroviral Treatment (START) Trial.

Baker JV, Hullsiek KH, Engen NW, Nelson R, Chetchotisakd P, Gerstoft J, Jessen H, Losso M, Markowitz N, Munderi P, Papadopoulos A, Shuter J, Rappoport C, Pearson MT, Finley E, Babiker A, Emery S, Duprez D; INSIGHT START Arterial Elasticity Substudy Team.

Open Forum Infect Dis. 2016 Oct 8;3(4):ofw213. eCollection 2016 Oct.

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