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Items: 1 to 50 of 57

1.

Balancing selection and introgression of newt immune-response genes.

Fijarczyk A, Dudek K, Niedzicka M, Babik W.

Proc Biol Sci. 2018 Aug 15;285(1884). pii: 20180819. doi: 10.1098/rspb.2018.0819.

PMID:
30111606
2.

Genomics of end-Pleistocene population replacement in a small mammal.

Kotlík P, Marková S, Konczal M, Babik W, Searle JB.

Proc Biol Sci. 2018 Feb 14;285(1872). pii: 20172624. doi: 10.1098/rspb.2017.2624.

PMID:
29436497
3.

Isolation and gene flow in a speciation continuum in newts.

Pabijan M, Zieliński P, Dudek K, Stuglik M, Babik W.

Mol Phylogenet Evol. 2017 Nov;116:1-12. doi: 10.1016/j.ympev.2017.08.003. Epub 2017 Aug 7.

PMID:
28797693
4.

Linkage Map of Lissotriton Newts Provides Insight into the Genetic Basis of Reproductive Isolation.

Niedzicka M, Dudek K, Fijarczyk A, Zieliński P, Babik W.

G3 (Bethesda). 2017 Jul 5;7(7):2115-2124. doi: 10.1534/g3.117.041178.

5.

Selective Landscapes in newt Immune Genes Inferred from Patterns of Nucleotide Variation.

Fijarczyk A, Dudek K, Babik W.

Genome Biol Evol. 2016 Dec 31;8(11):3417-3432. doi: 10.1093/gbe/evw236.

6.

Genomic Response to Selection for Predatory Behavior in a Mammalian Model of Adaptive Radiation.

Konczal M, Koteja P, Orlowska-Feuer P, Radwan J, Sadowska ET, Babik W.

Mol Biol Evol. 2016 Sep;33(9):2429-40. doi: 10.1093/molbev/msw121. Epub 2016 Jul 8.

PMID:
27401229
7.

Transcriptomics of Intralocus Sexual Conflict: Gene Expression Patterns in Females Change in Response to Selection on a Male Secondary Sexual Trait in the Bulb Mite.

Joag R, Stuglik M, Konczal M, Plesnar-Bielak A, Skrzynecka A, Babik W, Radwan J.

Genome Biol Evol. 2016 Aug 25;8(8):2351-7. doi: 10.1093/gbe/evw169.

8.

Genomic heterogeneity of historical gene flow between two species of newts inferred from transcriptome data.

Stuglik MT, Babik W.

Ecol Evol. 2016 Jun 9;6(13):4513-25. doi: 10.1002/ece3.2152. eCollection 2016 Jul.

9.

Divergence history of the Carpathian and smooth newts modelled in space and time.

Zieliński P, Nadachowska-Brzyska K, Dudek K, Babik W.

Mol Ecol. 2016 Aug;25(16):3912-28. doi: 10.1111/mec.13724. Epub 2016 Jul 9.

PMID:
27288862
10.

Biofilm feeding: Microbial colonization of food promotes the growth of a detritivorous arthropod.

Horváthová T, Babik W, Bauchinger U.

Zookeys. 2016 Apr 5;(577):25-41. doi: 10.3897/zookeys.577.6149. eCollection 2016.

11.

Molecular Inversion Probes for targeted resequencing in non-model organisms.

Niedzicka M, Fijarczyk A, Dudek K, Stuglik M, Babik W.

Sci Rep. 2016 Apr 5;6:24051. doi: 10.1038/srep24051.

12.

Deeply divergent sympatric mitochondrial lineages of the earthworm Lumbricus rubellus are not reproductively isolated.

Giska I, Sechi P, Babik W.

BMC Evol Biol. 2015 Oct 5;15:217. doi: 10.1186/s12862-015-0488-9.

13.

Plant-herbivorous beetle networks: molecular characterization of trophic ecology within a threatened steppic environment.

Kajtoch Ł, Kubisz D, Heise W, Mazur MA, Babik W.

Mol Ecol. 2015 Aug;24(15):4023-38. doi: 10.1111/mec.13278. Epub 2015 Jul 17.

PMID:
26084200
14.

Genome-wide genetic diversity of rove beetle populations along a metal pollution gradient.

Giska I, Babik W, van Gestel CA, van Straalen NM, Laskowski R.

Ecotoxicol Environ Saf. 2015 Sep;119:98-105. doi: 10.1016/j.ecoenv.2015.04.048. Epub 2015 May 16.

PMID:
25988435
15.

Detecting balancing selection in genomes: limits and prospects.

Fijarczyk A, Babik W.

Mol Ecol. 2015 Jul;24(14):3529-45. doi: 10.1111/mec.13226. Epub 2015 Jun 15. Review.

PMID:
25943689
16.

Initial Molecular-Level Response to Artificial Selection for Increased Aerobic Metabolism Occurs Primarily through Changes in Gene Expression.

Konczal M, Babik W, Radwan J, Sadowska ET, Koteja P.

Mol Biol Evol. 2015 Jun;32(6):1461-73. doi: 10.1093/molbev/msv038. Epub 2015 Mar 3.

PMID:
25739734
17.

Constraint and adaptation in newt toll-like receptor genes.

Babik W, Dudek K, Fijarczyk A, Pabijan M, Stuglik M, Szkotak R, Zieliński P.

Genome Biol Evol. 2014 Dec 4;7(1):81-95. doi: 10.1093/gbe/evu266.

18.

No evidence for the effect of MHC on male mating success in the brown bear.

Kuduk K, Babik W, Bellemain E, Valentini A, Zedrosser A, Taberlet P, Kindberg J, Swenson JE, Radwan J.

PLoS One. 2014 Dec 3;9(12):e113414. doi: 10.1371/journal.pone.0113414. eCollection 2014.

19.

Parasite load and MHC diversity in undisturbed and agriculturally modified habitats of the ornate dragon lizard.

Radwan J, Kuduk K, Levy E, LeBas N, Babik W.

Mol Ecol. 2014 Dec;23(24):5966-78. doi: 10.1111/mec.12984. Epub 2014 Nov 24.

PMID:
25355141
20.

Data concatenation, Bayesian concordance and coalescent-based analyses of the species tree for the rapid radiation of Triturus newts.

Wielstra B, Arntzen JW, van der Gaag KJ, Pabijan M, Babik W.

PLoS One. 2014 Oct 22;9(10):e111011. doi: 10.1371/journal.pone.0111011. eCollection 2014.

21.

Selective pressures on MHC class II genes in the guppy (Poecilia reticulata) as inferred by hierarchical analysis of population structure.

Herdegen M, Babik W, Radwan J.

J Evol Biol. 2014 Nov;27(11):2347-59. doi: 10.1111/jeb.12476. Epub 2014 Sep 19.

22.

Single nucleotide polymorphisms reveal genetic structuring of the carpathian newt and provide evidence of interspecific gene flow in the nuclear genome.

Zieliński P, Dudek K, Stuglik MT, Liana M, Babik W.

PLoS One. 2014 May 12;9(5):e97431. doi: 10.1371/journal.pone.0097431. eCollection 2014. Erratum in: PLoS One. 2014;9(6):e101352.

23.

Population structure of guppies in north-eastern Venezuela, the area of putative incipient speciation.

Herdegen M, Alexander HJ, Babik W, Mavárez J, Breden F, Radwan J.

BMC Evol Biol. 2014 Feb 17;14(1):28. doi: 10.1186/1471-2148-14-28.

24.

Accuracy of allele frequency estimation using pooled RNA-Seq.

Konczal M, Koteja P, Stuglik MT, Radwan J, Babik W.

Mol Ecol Resour. 2014 Mar;14(2):381-92. doi: 10.1111/1755-0998.12186. Epub 2013 Nov 16.

PMID:
24119300
25.

Development, validation and high-throughput analysis of sequence markers in nonmodel species.

Zieliński P, Stuglik MT, Dudek K, Konczal M, Babik W.

Mol Ecol Resour. 2014 Mar;14(2):352-60. doi: 10.1111/1755-0998.12171. Epub 2013 Oct 16.

PMID:
24103386
26.

No evidence for nuclear introgression despite complete mtDNA replacement in the Carpathian newt (Lissotriton montandoni).

Zieliński P, Nadachowska-Brzyska K, Wielstra B, Szkotak R, Covaciu-Marcov SD, Cogălniceanu D, Babik W.

Mol Ecol. 2013 Apr;22(7):1884-903. doi: 10.1111/mec.12225. Epub 2013 Feb 4.

PMID:
23379646
27.

The genomics of adaptation.

Radwan J, Babik W.

Proc Biol Sci. 2012 Dec 22;279(1749):5024-8. doi: 10.1098/rspb.2012.2322. Epub 2012 Oct 24.

28.

Development and characterization of microsatellite loci in the Centricnemus leucogrammus weevil.

Kajtoch L, Nadachowska-Brzyska K, Babik W.

Mol Biol Rep. 2012 Dec;39(12):11131-6. doi: 10.1007/s11033-012-2021-1. Epub 2012 Oct 13.

29.

Evolution of major histocompatibility complex class I and class II genes in the brown bear.

Kuduk K, Babik W, Bojarska K, Sliwińska EB, Kindberg J, Taberlet P, Swenson JE, Radwan J.

BMC Evol Biol. 2012 Oct 2;12:197. doi: 10.1186/1471-2148-12-197.

30.

MHC diversity, malaria and lifetime reproductive success in collared flycatchers.

Radwan J, Zagalska-Neubauer M, Cichoń M, Sendecka J, Kulma K, Gustafsson L, Babik W.

Mol Ecol. 2012 May;21(10):2469-79. doi: 10.1111/j.1365-294X.2012.05547.x. Epub 2012 Apr 18.

PMID:
22512812
31.

Low major histocompatibility complex class I (MHC I) variation in the European bison (Bison bonasus).

Babik W, Kawalko A, Wójcik JM, Radwan J.

J Hered. 2012 May-Jun;103(3):349-59. doi: 10.1093/jhered/ess005. Epub 2012 Apr 10.

PMID:
22496313
32.

Interspecific hybridization increases MHC class II diversity in two sister species of newts.

Nadachowska-Brzyska K, Zieliński P, Radwan J, Babik W.

Mol Ecol. 2012 Feb;21(4):887-906. doi: 10.1111/j.1365-294X.2011.05347.x. Epub 2011 Nov 9.

PMID:
22066802
33.

Evaluation of two approaches to genotyping major histocompatibility complex class I in a passerine-CE-SSCP and 454 pyrosequencing.

Promerová M, Babik W, Bryja J, Albrecht T, Stuglik M, Radwan J.

Mol Ecol Resour. 2012 Mar;12(2):285-92. doi: 10.1111/j.1755-0998.2011.03082.x. Epub 2011 Oct 24.

PMID:
22018268
34.

Nuclear and mitochondrial phylogeography of the European fire-bellied toads Bombina bombina and Bombina variegata supports their independent histories.

Fijarczyk A, Nadachowska K, Hofman S, Litvinchuk SN, Babik W, Stuglik M, Gollmann G, Choleva L, Cogălniceanu D, Vukov T, Džukić G, Szymura JM.

Mol Ecol. 2011 Aug;20(16):3381-98. doi: 10.1111/j.1365-294X.2011.05175.x. Epub 2011 Jul 13.

PMID:
21749513
35.

jMHC: software assistant for multilocus genotyping of gene families using next-generation amplicon sequencing.

Stuglik MT, Radwan J, Babik W.

Mol Ecol Resour. 2011 Jul;11(4):739-42. doi: 10.1111/j.1755-0998.2011.02997.x. Epub 2011 Feb 28.

PMID:
21676201
36.

454 sequencing reveals extreme complexity of the class II Major Histocompatibility Complex in the collared flycatcher.

Zagalska-Neubauer M, Babik W, Stuglik M, Gustafsson L, Cichoń M, Radwan J.

BMC Evol Biol. 2010 Dec 31;10:395. doi: 10.1186/1471-2148-10-395.

37.

MHC allele frequency distributions under parasite-driven selection: A simulation model.

Ejsmond MJ, Babik W, Radwan J.

BMC Evol Biol. 2010 Oct 27;10:332. doi: 10.1186/1471-2148-10-332.

38.

Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate.

Babik W, Stuglik M, Qi W, Kuenzli M, Kuduk K, Koteja P, Radwan J.

BMC Genomics. 2010 Jun 21;11:390. doi: 10.1186/1471-2164-11-390.

39.

Effects of an MHC-DRB genotype and allele number on the load of gut parasites in the bank vole Myodes glareolus.

Kloch A, Babik W, Bajer A, Siński E, Radwan J.

Mol Ecol. 2010 Mar;19 Suppl 1:255-65. doi: 10.1111/j.1365-294X.2009.04476.x.

PMID:
20331784
40.

Methods for MHC genotyping in non-model vertebrates.

Babik W.

Mol Ecol Resour. 2010 Mar;10(2):237-51. doi: 10.1111/j.1755-0998.2009.02788.x. Epub 2009 Oct 15.

PMID:
21565019
41.

How sympatric is speciation in the Howea palms of Lord Howe Island?

Babik W, Butlin RK, Baker WJ, Papadopulos AS, Boulesteix M, Anstett MC, Lexer C, Hutton I, Savolainen V.

Mol Ecol. 2009 Sep;18(17):3629-38. doi: 10.1111/j.1365-294X.2009.04306.x. Epub 2009 Aug 10.

PMID:
19674301
42.

Fungi from the roots of the common terrestrial orchid Gymnadenia conopsea.

Stark C, Babik W, Durka W.

Mycol Res. 2009 Sep;113(Pt 9):952-9. doi: 10.1016/j.mycres.2009.05.002. Epub 2009 May 30.

PMID:
19486943
43.

A combination of techniques proves useful in the development of nuclear markers in the newt genus Triturus.

Espregueira Themudo G, Babik W, Arntzen JW.

Mol Ecol Resour. 2009 May;9(3):1160-2. doi: 10.1111/j.1755-0998.2009.02574.x. Epub 2009 Feb 24.

PMID:
21564844
44.

New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system.

Babik W, Taberlet P, Ejsmond MJ, Radwan J.

Mol Ecol Resour. 2009 May;9(3):713-9. doi: 10.1111/j.1755-0998.2009.02622.x. Epub 2009 Mar 17.

PMID:
21564729
45.

Long-term survival of a urodele amphibian despite depleted major histocompatibility complex variation.

Babik W, Pabijan M, Arntzen JW, Cogâlniceanu D, Durka W, Radwan J.

Mol Ecol. 2009 Mar;18(5):769-81. doi: 10.1111/j.1365-294X.2008.04057.x.

PMID:
19207255
46.

Divergence in the face of gene flow: the case of two newts (amphibia: salamandridae).

Nadachowska K, Babik W.

Mol Biol Evol. 2009 Apr;26(4):829-41. doi: 10.1093/molbev/msp004. Epub 2009 Jan 8.

PMID:
19136451
47.

Contrasting patterns of variation in MHC loci in the Alpine newt.

Babik W, Pabijan M, Radwan J.

Mol Ecol. 2008 May;17(10):2339-55. doi: 10.1111/j.1365-294X.2008.03757.x. Epub 2008 Apr 17.

PMID:
18422929
48.

Phylogeography of the fire-bellied toads Bombina: independent Pleistocene histories inferred from mitochondrial genomes.

Hofman S, Spolsky C, Uzzell T, Cogălniceanu D, Babik W, Szymura JM.

Mol Ecol. 2007 Jun;16(11):2301-16.

PMID:
17561892
49.

MHC-DRB3 variation in a free-living population of the European bison, Bison bonasus.

Radwan J, Kawałko A, Wójcik JM, Babik W.

Mol Ecol. 2007 Feb;16(3):531-40.

PMID:
17257111

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