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Items: 26

1.

Analytical and Clinical Validation of Expressed Variants and Fusions From the Whole Transcriptome of Thyroid FNA Samples.

Angell TE, Wirth LJ, Cabanillas ME, Shindo ML, Cibas ES, Babiarz JE, Hao Y, Kim SY, Walsh PS, Huang J, Kloos RT, Kennedy GC, Waguespack SG.

Front Endocrinol (Lausanne). 2019 Sep 11;10:612. doi: 10.3389/fendo.2019.00612. eCollection 2019.

2.

Analytical Verification Performance of Afirma Genomic Sequencing Classifier in the Diagnosis of Cytologically Indeterminate Thyroid Nodules.

Hao Y, Choi Y, Babiarz JE, Kloos RT, Kennedy GC, Huang J, Walsh PS.

Front Endocrinol (Lausanne). 2019 Jul 4;10:438. doi: 10.3389/fendo.2019.00438. eCollection 2019.

3.

Detection of Clonal and Subclonal Copy-Number Variants in Cell-Free DNA from Patients with Breast Cancer Using a Massively Multiplexed PCR Methodology.

Kirkizlar E, Zimmermann B, Constantin T, Swenerton R, Hoang B, Wayham N, Babiarz JE, Demko Z, Pelham RJ, Kareht S, Simon AL, Jinnett KN, Rabinowitz M, Sigurjonsson S, Hill M.

Transl Oncol. 2015 Oct;8(5):407-16. doi: 10.1016/j.tranon.2015.08.004.

4.

Clinical experience with single-nucleotide polymorphism-based non-invasive prenatal screening for 22q11.2 deletion syndrome.

Gross SJ, Stosic M, McDonald-McGinn DM, Bassett AS, Norvez A, Dhamankar R, Kobara K, Kirkizlar E, Zimmermann B, Wayham N, Babiarz JE, Ryan A, Jinnett KN, Demko Z, Benn P.

Ultrasound Obstet Gynecol. 2016 Feb;47(2):177-83. doi: 10.1002/uog.15754. Epub 2016 Jan 5.

5.

Improved specificity of TALE-based genome editing using an expanded RVD repertoire.

Miller JC, Zhang L, Xia DF, Campo JJ, Ankoudinova IV, Guschin DY, Babiarz JE, Meng X, Hinkley SJ, Lam SC, Paschon DE, Vincent AI, Dulay GP, Barlow KA, Shivak DA, Leung E, Kim JD, Amora R, Urnov FD, Gregory PD, Rebar EJ.

Nat Methods. 2015 May;12(5):465-71. doi: 10.1038/nmeth.3330. Epub 2015 Mar 23.

PMID:
25799440
6.

Expanding the scope of noninvasive prenatal testing: detection of fetal microdeletion syndromes.

Wapner RJ, Babiarz JE, Levy B, Stosic M, Zimmermann B, Sigurjonsson S, Wayham N, Ryan A, Banjevic M, Lacroute P, Hu J, Hall MP, Demko Z, Siddiqui A, Rabinowitz M, Gross SJ, Hill M, Benn P.

Am J Obstet Gynecol. 2015 Mar;212(3):332.e1-9. doi: 10.1016/j.ajog.2014.11.041. Epub 2014 Dec 2.

7.

Eri1 regulates microRNA homeostasis and mouse lymphocyte development and antiviral function.

Thomas MF, Abdul-Wajid S, Panduro M, Babiarz JE, Rajaram M, Woodruff P, Lanier LL, Heissmeyer V, Ansel KM.

Blood. 2012 Jul 5;120(1):130-42. doi: 10.1182/blood-2011-11-394072. Epub 2012 May 21.

8.

Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzyme.

Wang J, Friedman G, Doyon Y, Wang NS, Li CJ, Miller JC, Hua KL, Yan JJ, Babiarz JE, Gregory PD, Holmes MC.

Genome Res. 2012 Jul;22(7):1316-26. doi: 10.1101/gr.122879.111. Epub 2012 Mar 20.

9.

Determination of the human cardiomyocyte mRNA and miRNA differentiation network by fine-scale profiling.

Babiarz JE, Ravon M, Sridhar S, Ravindran P, Swanson B, Bitter H, Weiser T, Chiao E, Certa U, Kolaja KL.

Stem Cells Dev. 2012 Jul 20;21(11):1956-65. doi: 10.1089/scd.2011.0357. Epub 2012 Jan 4.

10.

Use of human stem cell derived cardiomyocytes to examine sunitinib mediated cardiotoxicity and electrophysiological alterations.

Cohen JD, Babiarz JE, Abrams RM, Guo L, Kameoka S, Chiao E, Taunton J, Kolaja KL.

Toxicol Appl Pharmacol. 2011 Nov 15;257(1):74-83. doi: 10.1016/j.taap.2011.08.020. Epub 2011 Aug 27.

11.

MicroRNA-29 regulates T-box transcription factors and interferon-γ production in helper T cells.

Steiner DF, Thomas MF, Hu JK, Yang Z, Babiarz JE, Allen CD, Matloubian M, Blelloch R, Ansel KM.

Immunity. 2011 Aug 26;35(2):169-81. doi: 10.1016/j.immuni.2011.07.009. Epub 2011 Aug 4.

12.

A role for noncanonical microRNAs in the mammalian brain revealed by phenotypic differences in Dgcr8 versus Dicer1 knockouts and small RNA sequencing.

Babiarz JE, Hsu R, Melton C, Thomas M, Ullian EM, Blelloch R.

RNA. 2011 Aug;17(8):1489-501. doi: 10.1261/rna.2442211. Epub 2011 Jun 28.

13.

Estimating the risk of drug-induced proarrhythmia using human induced pluripotent stem cell-derived cardiomyocytes.

Guo L, Abrams RM, Babiarz JE, Cohen JD, Kameoka S, Sanders MJ, Chiao E, Kolaja KL.

Toxicol Sci. 2011 Sep;123(1):281-9. doi: 10.1093/toxsci/kfr158. Epub 2011 Jun 20.

PMID:
21693436
14.

Material strategies for black-to-transmissive window-type polymer electrochromic devices.

Vasilyeva SV, Beaujuge PM, Wang S, Babiarz JE, Ballarotto VW, Reynolds JR.

ACS Appl Mater Interfaces. 2011 Apr;3(4):1022-32. doi: 10.1021/am101148s. Epub 2011 Mar 11.

PMID:
21395243
15.

Small RNAs – their biogenesis, regulation and function in embryonic stem cells.

Babiarz JE, Blelloch R.

StemBook [Internet]. Cambridge (MA): Harvard Stem Cell Institute; 2008-.
2009 May 31.

16.

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes.

Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP.

Genes Dev. 2010 May 15;24(10):992-1009. doi: 10.1101/gad.1884710. Epub 2010 Apr 22.

17.

Embryonic stem cell-specific microRNAs promote induced pluripotency.

Judson RL, Babiarz JE, Venere M, Blelloch R.

Nat Biotechnol. 2009 May;27(5):459-61. doi: 10.1038/nbt.1535. Epub 2009 Apr 12.

18.

Elaboration, diversification and regulation of the Sir1 family of silencing proteins in Saccharomyces.

Gallagher JE, Babiarz JE, Teytelman L, Wolfe KH, Rine J.

Genetics. 2009 Apr;181(4):1477-91. doi: 10.1534/genetics.108.099663. Epub 2009 Jan 26.

19.

Embryonic stem cell-specific microRNAs regulate the G1-S transition and promote rapid proliferation.

Wang Y, Baskerville S, Shenoy A, Babiarz JE, Baehner L, Blelloch R.

Nat Genet. 2008 Dec;40(12):1478-83. doi: 10.1038/ng.250. Epub 2008 Nov 2.

20.

Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs.

Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R.

Genes Dev. 2008 Oct 15;22(20):2773-85. doi: 10.1101/gad.1705308.

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Angiotensin converting enzyme inhibitors: structure-activity profile of 1-benzazepin-2-one derivatives.

Stanton JL, Watthey JW, Desai MN, Finn BM, Babiarz JE, Tomaselli HC.

J Med Chem. 1985 Nov;28(11):1603-6.

PMID:
2999394
25.

Synthesis and biological properties of (carboxyalkyl)amino-substituted bicyclic lactam inhibitors of angiotensin converting enzyme.

Watthey JW, Stanton JL, Desai M, Babiarz JE, Finn BM.

J Med Chem. 1985 Oct;28(10):1511-6.

PMID:
2995669
26.

Angiotensin converting enzyme inhibitors: N-substituted monocyclic and bicyclic amino acid derivatives.

Stanton JL, Gruenfeld N, Babiarz JE, Ackerman MH, Friedmann RC, Yuan AM, Macchia W.

J Med Chem. 1983 Sep;26(9):1267-77.

PMID:
6310112

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