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Items: 25

1.
2.

Multiplexed detection of RNA using MERFISH and branched DNA amplification.

Xia C, Babcock HP, Moffitt JR, Zhuang X.

Sci Rep. 2019 May 22;9(1):7721. doi: 10.1038/s41598-019-43943-8.

3.

Imaging-based pooled CRISPR screening reveals regulators of lncRNA localization.

Wang C, Lu T, Emanuel G, Babcock HP, Zhuang X.

Proc Natl Acad Sci U S A. 2019 May 28;116(22):10842-10851. doi: 10.1073/pnas.1903808116. Epub 2019 May 13.

4.
5.

Analyzing Single Molecule Localization Microscopy Data Using Cubic Splines.

Babcock HP, Zhuang X.

Sci Rep. 2017 Apr 3;7(1):552. doi: 10.1038/s41598-017-00622-w.

6.

High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization.

Moffitt JR, Hao J, Wang G, Chen KH, Babcock HP, Zhuang X.

Proc Natl Acad Sci U S A. 2016 Sep 27;113(39):11046-51. doi: 10.1073/pnas.1612826113. Epub 2016 Sep 13.

7.

Mapping Synaptic Input Fields of Neurons with Super-Resolution Imaging.

Sigal YM, Speer CM, Babcock HP, Zhuang X.

Cell. 2015 Oct 8;163(2):493-505. doi: 10.1016/j.cell.2015.08.033. Epub 2015 Oct 1.

8.

Correlative stochastic optical reconstruction microscopy and electron microscopy.

Kim D, Deerinck TJ, Sigal YM, Babcock HP, Ellisman MH, Zhuang X.

PLoS One. 2015 Apr 15;10(4):e0124581. doi: 10.1371/journal.pone.0124581. eCollection 2015.

9.

Developmental mechanism of the periodic membrane skeleton in axons.

Zhong G, He J, Zhou R, Lorenzo D, Babcock HP, Bennett V, Zhuang X.

Elife. 2014 Dec 23;3. doi: 10.7554/eLife.04581.

10.

Fast compressed sensing analysis for super-resolution imaging using L1-homotopy.

Babcock HP, Moffitt JR, Cao Y, Zhuang X.

Opt Express. 2013 Nov 18;21(23):28583-96. doi: 10.1364/OE.21.028583.

11.

Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes.

Shim SH, Xia C, Zhong G, Babcock HP, Vaughan JC, Huang B, Wang X, Xu C, Bi GQ, Zhuang X.

Proc Natl Acad Sci U S A. 2012 Aug 28;109(35):13978-83. doi: 10.1073/pnas.1201882109. Epub 2012 Aug 13.

12.

Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton.

Xu K, Babcock HP, Zhuang X.

Nat Methods. 2012 Jan 8;9(2):185-8. doi: 10.1038/nmeth.1841.

13.

Using single-particle tracking to study nuclear trafficking of viral genes.

Babcock HP, Chen C, Zhuang X.

Biophys J. 2004 Oct;87(4):2749-58.

14.

Observation of polymer conformation hysteresis in extensional flow.

Schroeder CM, Babcock HP, Shaqfeh ES, Chu S.

Science. 2003 Sep 12;301(5639):1515-9.

15.

Visualizing infection of individual influenza viruses.

Lakadamyali M, Rust MJ, Babcock HP, Zhuang X.

Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9280-5. Epub 2003 Jul 25.

16.

Single-molecule transition-state analysis of RNA folding.

Bokinsky G, Rueda D, Misra VK, Rhodes MM, Gordus A, Babcock HP, Walter NG, Zhuang X.

Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9302-7. Epub 2003 Jul 17.

17.

Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase.

Ha T, Rasnik I, Cheng W, Babcock HP, Gauss GH, Lohman TM, Chu S.

Nature. 2002 Oct 10;419(6907):638-41.

PMID:
12374984
18.

Dynamics and configurational fluctuations of single DNA molecules in linear mixed flows.

Hur JS, Shaqfeh ES, Babcock HP, Chu S.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Jul;66(1 Pt 1):011915. Epub 2002 Jul 26.

PMID:
12241392
19.

Correlating structural dynamics and function in single ribozyme molecules.

Zhuang X, Kim H, Pereira MJ, Babcock HP, Walter NG, Chu S.

Science. 2002 May 24;296(5572):1473-6.

20.

Exploring the folding landscape of a structured RNA.

Russell R, Zhuang X, Babcock HP, Millett IS, Doniach S, Chu S, Herschlag D.

Proc Natl Acad Sci U S A. 2002 Jan 8;99(1):155-60. Epub 2001 Dec 26.

21.

Relating the microscopic and macroscopic response of a polymeric fluid in a shearing flow.

Babcock HP, Smith DE, Hur JS, Shaqfeh ES, Chu S.

Phys Rev Lett. 2000 Aug 28;85(9):2018-21.

PMID:
10970672
22.

A single-molecule study of RNA catalysis and folding.

Zhuang X, Bartley LE, Babcock HP, Russell R, Ha T, Herschlag D, Chu S.

Science. 2000 Jun 16;288(5473):2048-51.

23.

Single-polymer dynamics in steady shear flow.

Smith DE, Babcock HP, Chu S.

Science. 1999 Mar 12;283(5408):1724-7.

24.

Effect of anisotropy of the bending rigidity on the supercoiling free energy of small circular DNAs.

Schurr JM, Babcock HP, Gebe JA.

Biopolymers. 1995 Nov;36(5):633-41.

PMID:
7578955
25.

A test of the model-free formulas. Effects of anisotropic rotational diffusion and dimerization.

Schurr JM, Babcock HP, Fujimoto BS.

J Magn Reson B. 1994 Nov;105(3):211-24.

PMID:
7850167

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