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Methods and approaches to disease mechanisms using systems kinomics.

Berard A, Kroeker A, McQueen P, Coombs KM.

Synth Syst Biotechnol. 2017 Dec 18;3(1):34-43. doi: 10.1016/j.synbio.2017.12.004. eCollection 2018 Mar. Review.


Intestinal damage precedes mucosal immune dysfunction in SIV infection.

Hensley-McBain T, Berard AR, Manuzak JA, Miller CJ, Zevin AS, Polacino P, Gile J, Agricola B, Cameron M, Hu SL, Estes JD, Reeves RK, Smedley J, Keele BF, Burgener AD, Klatt NR.

Mucosal Immunol. 2018 Jun 15. doi: 10.1038/s41385-018-0032-5. [Epub ahead of print]


A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits.

Hibrand Saint-Oyant L, Ruttink T, Hamama L, Kirov I, Lakhwani D, Zhou NN, Bourke PM, Daccord N, Leus L, Schulz D, Van de Geest H, Hesselink T, Van Laere K, Debray K, Balzergue S, Thouroude T, Chastellier A, Jeauffre J, Voisine L, Gaillard S, Borm TJA, Arens P, Voorrips RE, Maliepaard C, Neu E, Linde M, Le Paslier MC, Bérard A, Bounon R, Clotault J, Choisne N, Quesneville H, Kawamura K, Aubourg S, Sakr S, Smulders MJM, Schijlen E, Bucher E, Debener T, De Riek J, Foucher F.

Nat Plants. 2018 Jun 11. doi: 10.1038/s41477-018-0166-1. [Epub ahead of print]


Understanding mucosal and microbial functionality of the female reproductive tract by metaproteomics: Implications for HIV transmission.

Berard AR, Perner M, Mutch S, Farr Zuend C, McQueen P, Burgener AD.

Am J Reprod Immunol. 2018 May 22:e12977. doi: 10.1111/aji.12977. [Epub ahead of print]


FANCM Limits Meiotic Crossovers in Brassica Crops.

Blary A, Gonzalo A, Eber F, Bérard A, Bergès H, Bessoltane N, Charif D, Charpentier C, Cromer L, Fourment J, Genevriez C, Le Paslier MC, Lodé M, Lucas MO, Nesi N, Lloyd A, Chèvre AM, Jenczewski E.

Front Plant Sci. 2018 Mar 23;9:368. doi: 10.3389/fpls.2018.00368. eCollection 2018.


Reply to 'Comment on "Use of antibiotics during pregnancy and the risk of major congenital malformations: a population based cohort study" by Muanda et al.'

Muanda F, Sheehy O, Berard A.

Br J Clin Pharmacol. 2018 May;84(5):1083-1084. doi: 10.1111/bcp.13528. Epub 2018 Feb 19. No abstract available.


Use of trimethoprim-sulfamethoxazole during pregnancy and risk of spontaneous abortion: a nested case control study.

Muanda FT, Sheehy O, Bérard A.

Br J Clin Pharmacol. 2018 Jun;84(6):1198-1205. doi: 10.1111/bcp.13542. Epub 2018 Mar 25.


Extended diversity analysis of cultivated grapevine Vitis vinifera with 10K genome-wide SNPs.

Laucou V, Launay A, Bacilieri R, Lacombe T, Adam-Blondon AF, Bérard A, Chauveau A, de Andrés MT, Hausmann L, Ibáñez J, Le Paslier MC, Maghradze D, Martinez-Zapater JM, Maul E, Ponnaiah M, Töpfer R, Péros JP, Boursiquot JM.

PLoS One. 2018 Feb 8;13(2):e0192540. doi: 10.1371/journal.pone.0192540. eCollection 2018.


Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.

Darracq A, Vitte C, Nicolas S, Duarte J, Pichon JP, Mary-Huard T, Chevalier C, Bérard A, Le Paslier MC, Rogowsky P, Charcosset A, Joets J.

BMC Genomics. 2018 Feb 5;19(1):119. doi: 10.1186/s12864-018-4490-7.


Administrative Claims Data Versus Augmented Pregnancy Data for the Study of Pharmaceutical Treatments in Pregnancy.

Andrade SE, Bérard A, Nordeng HME, Wood ME, van Gelder MMHJ, Toh S.

Curr Epidemiol Rep. 2017;4(2):106-116. doi: 10.1007/s40471-017-0104-1. Epub 2017 Apr 18. Review.


Risk of preterm birth following late pregnancy exposure to NSAIDs or COX-2 inhibitors.

Bérard A, Sheehy O, Girard S, Zhao JP, Bernatsky S.

Pain. 2018 May;159(5):948-955. doi: 10.1097/j.pain.0000000000001163.


High throughput SNP discovery and genotyping in hexaploid wheat.

Rimbert H, Darrier B, Navarro J, Kitt J, Choulet F, Leveugle M, Duarte J, Rivière N, Eversole K; International Wheat Genome Sequencing Consortium, Le Gouis J; on behalf The BreedWheat Consortium, Davassi A, Balfourier F, Le Paslier MC, Berard A, Brunel D, Feuillet C, Poncet C, Sourdille P, Paux E.

PLoS One. 2018 Jan 2;13(1):e0186329. doi: 10.1371/journal.pone.0186329. eCollection 2018.


Leflunomide use during pregnancy and the risk of adverse pregnancy outcomes.

Bérard A, Zhao JP, Shui I, Colilla S.

Ann Rheum Dis. 2018 Apr;77(4):500-509. doi: 10.1136/annrheumdis-2017-212078. Epub 2017 Dec 8.


A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3).

Canaguier A, Grimplet J, Di Gaspero G, Scalabrin S, Duchêne E, Choisne N, Mohellibi N, Guichard C, Rombauts S, Le Clainche I, Bérard A, Chauveau A, Bounon R, Rustenholz C, Morgante M, Le Paslier MC, Brunel D, Adam-Blondon AF.

Genom Data. 2017 Sep 18;14:56-62. doi: 10.1016/j.gdata.2017.09.002. eCollection 2017 Dec. No abstract available.


Soil C and N statuses determine the effect of maize inoculation by plant growth-promoting rhizobacteria on nitrifying and denitrifying communities.

Florio A, Pommier T, Gervaix J, Bérard A, Le Roux X.

Sci Rep. 2017 Aug 21;7(1):8411. doi: 10.1038/s41598-017-08589-4.


Antiretroviral combination use during pregnancy and the risk of major congenital malformations.

Bérard A, Sheehy O, Zhao JP, Abrahamowicz M, Loutfy M, Boucoiran I, Bernatsky S.

AIDS. 2017 Oct 23;31(16):2267-2277. doi: 10.1097/QAD.0000000000001610.


Response to: "Maternal infection can cause spontaneous abortion".

Bérard A, Muanda FT, Sheehy O.

CMAJ. 2017 Aug 8;189(31):E1022. doi: 10.1503/cmaj.733251. No abstract available.


Association between CYP2D6 Genotypes and the Risk of Antidepressant Discontinuation, Dosage Modification and the Occurrence of Maternal Depression during Pregnancy.

Bérard A, Gaedigk A, Sheehy O, Chambers C, Roth M, Bozzo P, Johnson D, Kao K, Lavigne S, Wolfe L, Quinn D, Dieter K, Zhao JP; OTIS (MotherToBaby) Collaborative Research Committee.

Front Pharmacol. 2017 Jul 17;8:402. doi: 10.3389/fphar.2017.00402. eCollection 2017.


The authors respond to: "Optimal levels of DHEA for pregnancy may be reduced by antibiotics".

Bérard A, Muanda FT, Sheehy O.

CMAJ. 2017 Jul 31;189(30):E1000. doi: 10.1503/cmaj.733133. No abstract available.


Use of antibiotics during pregnancy and the risk of major congenital malformations: a population based cohort study.

Muanda FT, Sheehy O, Bérard A.

Br J Clin Pharmacol. 2017 Nov;83(11):2557-2571. doi: 10.1111/bcp.13364. Epub 2017 Aug 11.


Inflammation dependent mTORC1 signaling interferes with the switch from keratinocyte proliferation to differentiation.

Buerger C, Shirsath N, Lang V, Berard A, Diehl S, Kaufmann R, Boehncke WH, Wolf P.

PLoS One. 2017 Jul 10;12(7):e0180853. doi: 10.1371/journal.pone.0180853. eCollection 2017.


Assistive technologies to address capabilities of people with dementia: From research to practice.

Kenigsberg PA, Aquino JP, Bérard A, Brémond F, Charras K, Dening T, Droës RM, Gzil F, Hicks B, Innes A, Nguyen M, Nygård L, Pino M, Sacco G, Salmon E, van der Roest H, Villet H, Villez M, Robert P, Manera V.

Dementia (London). 2017 Jan 1:1471301217714093. doi: 10.1177/1471301217714093. [Epub ahead of print]


The authors respond to "Underlying maternal infection likely cause of study findings".

Bérard A, Muanda FT, Sheehy O.

CMAJ. 2017 Jul 10;189(27):E919. doi: 10.1503/cmaj.733254. No abstract available.


Antidepressant Use in Pregnancy and the Risk of Attention Deficit with or without Hyperactivity Disorder in Children.

Boukhris T, Sheehy O, Bérard A.

Paediatr Perinat Epidemiol. 2017 Jul;31(4):363-373. doi: 10.1111/ppe.12378. Epub 2017 Jun 22.


The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution.

Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Brière C, Owens GL, Carrère S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, Bellec A, Bérard A, Bergès H, Blanchet N, Boniface MC, Brunel D, Catrice O, Chaidir N, Claudel C, Donnadieu C, Faraut T, Fievet G, Helmstetter N, King M, Knapp SJ, Lai Z, Le Paslier MC, Lippi Y, Lorenzon L, Mandel JR, Marage G, Marchand G, Marquand E, Bret-Mestries E, Morien E, Nambeesan S, Nguyen T, Pegot-Espagnet P, Pouilly N, Raftis F, Sallet E, Schiex T, Thomas J, Vandecasteele C, Varès D, Vear F, Vautrin S, Crespi M, Mangin B, Burke JM, Salse J, Muños S, Vincourt P, Rieseberg LH, Langlade NB.

Nature. 2017 Jun 1;546(7656):148-152. doi: 10.1038/nature22380. Epub 2017 May 22.


Use of antibiotics during pregnancy and risk of spontaneous abortion.

Muanda FT, Sheehy O, Bérard A.

CMAJ. 2017 May 1;189(17):E625-E633. doi: 10.1503/cmaj.161020.


Postpartum complications in new mothers with juvenile idiopathic arthritis: a population-based cohort study.

Ehrmann Feldman D, Vinet É, Sylvestre MP, Hazel B, Duffy C, Bérard A, Meshefedjian G, Bernatsky S.

Rheumatology (Oxford). 2017 Aug 1;56(8):1378-1385. doi: 10.1093/rheumatology/kex168.


Can We Rely on Pharmacy Claims Databases to Ascertain Maternal Use of Medications during Pregnancy?

Zhao JP, Sheehy O, Gorgui J, Bérard A.

Birth Defects Res. 2017 Apr 3;109(6):423-431. doi: 10.1002/bdra.23604. Epub 2017 Mar 9.


Risk of Autism Spectrum Disorders in Children Born to Mothers With Rheumatoid Arthritis: A Systematic Literature Review.

Wojcik S, Bernatsky S, Platt RW, Pineau CA, Clarke AE, Fombonne É, Bérard A, Vinet É.

Arthritis Care Res (Hoboken). 2017 Dec;69(12):1926-1931. doi: 10.1002/acr.23235. Epub 2017 Nov 7. Review.


Corrigendum: Photo Initiated Chemical Vapour Deposition To Increase Polymer Hydrophobicity.

Bérard A, Patience GS, Chouinard G, Tavares JR.

Sci Rep. 2017 Feb 17;7:39422. doi: 10.1038/srep39422. No abstract available.


Neurodevelopmental Outcomes After Assisted Reproductive Technologies.

Balayla J, Sheehy O, Fraser WD, Séguin JR, Trasler J, Monnier P, MacLeod AA, Simard MN, Muckle G, Bérard A.

Obstet Gynecol. 2017 Feb;129(2):265-272. doi: 10.1097/AOG.0000000000001837.


CD40 signaling and hepatic steatosis: Unanticipated links.

Lepreux S, Villeneuve J, Dewitte A, Bérard AM, Desmoulière A, Ripoche J.

Clin Res Hepatol Gastroenterol. 2017 Sep;41(4):357-369. doi: 10.1016/j.clinre.2016.11.002. Epub 2016 Dec 15. Review.


Response to letter to the editor by Wise.

Laurent L, Huang C, Ernest SR, Berard A, Vaillancourt C, Hales BF.

Birth Defects Res A Clin Mol Teratol. 2016 Dec;106(12):1059-1061. doi: 10.1002/bdra.23580. Epub 2016 Nov 30. No abstract available.


SSRI and SNRI use during pregnancy and the risk of persistent pulmonary hypertension of the newborn.

Bérard A, Sheehy O, Zhao JP, Vinet É, Bernatsky S, Abrahamowicz M.

Br J Clin Pharmacol. 2017 May;83(5):1126-1133. doi: 10.1111/bcp.13194. Epub 2017 Jan 18.


Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.

Garcia V, Bres C, Just D, Fernandez L, Tai FW, Mauxion JP, Le Paslier MC, Bérard A, Brunel D, Aoki K, Alseekh S, Fernie AR, Fraser PD, Rothan C.

Nat Protoc. 2016 Dec;11(12):2401-2418. doi: 10.1038/nprot.2016.143. Epub 2016 Nov 3.


Success of smoking cessation interventions during pregnancy.

Bérard A, Zhao JP, Sheehy O.

Am J Obstet Gynecol. 2016 Nov;215(5):611.e1-611.e8. doi: 10.1016/j.ajog.2016.06.059. Epub 2016 Jul 8.


3D Cohort Study: The Integrated Research Network in Perinatology of Quebec and Eastern Ontario.

Fraser WD, Shapiro GD, Audibert F, Dubois L, Pasquier JC, Julien P, Bérard A, Muckle G, Trasler J, Tremblay RE, Abenhaim H, Welt M, Bédard MJ, Bissonnette F, Bujold E, Gagnon R, Michaud JL, Girard I, Moutquin JM, Marc I, Monnier P, Séguin JR, Luo ZC; 3D Study Group.

Paediatr Perinat Epidemiol. 2016 Nov;30(6):623-632. doi: 10.1111/ppe.12320. Epub 2016 Oct 25.



Bérard A, Zhao JP, Sheehy O.

Am J Obstet Gynecol. 2017 Mar;216(3):328-329. doi: 10.1016/j.ajog.2016.10.024. Epub 2016 Oct 22. No abstract available.


Biomass traits and candidate genes for bioenergy revealed through association genetics in coppiced European Populus nigra (L.).

Allwright MR, Payne A, Emiliani G, Milner S, Viger M, Rouse F, Keurentjes JJ, Bérard A, Wildhagen H, Faivre-Rampant P, Polle A, Morgante M, Taylor G.

Biotechnol Biofuels. 2016 Sep 8;9(1):195. doi: 10.1186/s13068-016-0603-1. eCollection 2016.


Selective serotonin reuptake inhibitors and autism: additional data on the Quebec Pregnancy/Birth Cohort.

Bérard A, Boukhris T, Sheehy O.

Am J Obstet Gynecol. 2016 Dec;215(6):803-805. doi: 10.1016/j.ajog.2016.08.021. Epub 2016 Aug 31. No abstract available.


Photo Initiated Chemical Vapour Deposition To Increase Polymer Hydrophobicity.

Bérard A, Patience GS, Chouinard G, Tavares JR.

Sci Rep. 2016 Aug 17;6:31574. doi: 10.1038/srep31574. Erratum in: Sci Rep. 2017 Feb 17;7:39422.


Ovarian Stimulation, Intrauterine Insemination, Multiple Pregnancy and Major Congenital Malformations: A Systematic Review and Meta- Analysis- The ART_Rev Study.

Chaabane S, Sheehy O, Monnier P, Fraser W, Bissonnette F, Trasler JM, Muanda FT, Boukhris T, Karam F, Santos F, Blais L, Bérard A.

Curr Drug Saf. 2016;11(3):222-61. Review.


In utero exposure to venlafaxine, a serotonin-norepinephrine reuptake inhibitor, increases cardiac anomalies and alters placental and heart serotonin signaling in the rat.

Laurent L, Huang C, Ernest SR, Berard A, Vaillancourt C, Hales BF.

Birth Defects Res A Clin Mol Teratol. 2016 Dec;106(12):1044-1055. doi: 10.1002/bdra.23537. Epub 2016 Jul 7.


Maternal inhaled fluticasone propionate intake during pregnancy is detected in neonatal cord blood.

Battista MC, Boutin M, Venne P, Blais L, Bérard A, Lacroix M, Patenaude J, Guillemette L, Cossette B, Hivert MF, Auray-Blais C.

Bioanalysis. 2016 Jun 28. [Epub ahead of print]


Ovarian Stimulators, Intrauterine Insemination, and Assisted Reproductive Technologies Use and the Risk of Major Congenital Malformations-The AtRISK Study.

Chaabane S, Sheehy O, Monnier P, Bissonnette F, Trasler JM, Fraser W, Bérard A.

Birth Defects Res B Dev Reprod Toxicol. 2016 Jun;107(3):136-47. doi: 10.1002/bdrb.21178. Epub 2016 Jun 13.


Prenatal Antidepressant Use and Risk of Autism Spectrum Disorders in Children-Reply.

Bérard A, Boukhris T.

JAMA Pediatr. 2016 Jul 1;170(7):714-5. doi: 10.1001/jamapediatrics.2016.0748. No abstract available.


Paroxetine use during pregnancy and the risk of cardiac defects.

Bérard A, Chaabane S, Muanda FT, Boukhris T, Zhao J.

Br J Clin Pharmacol. 2016 Aug;82(2):566-7. doi: 10.1111/bcp.12979. Epub 2016 May 20. No abstract available.


Methodological quality of antimalarial randomized controlled trials during pregnancy and its impact on the risk of low birth weight.

Muanda FT, Bérard A.

Br J Clin Pharmacol. 2016 Sep;82(3):806-13. doi: 10.1111/bcp.12998. Epub 2016 Jun 13.


Occurrence of pregnancy and pregnancy outcomes during isotretinoin therapy.

Henry D, Dormuth C, Winquist B, Carney G, Bugden S, Teare G, Lévesque LE, Bérard A, Paterson JM, Platt RW; CNODES (Canadian Network for Observational Drug Effect Studies) Investigators.

CMAJ. 2016 Jul 12;188(10):723-30. doi: 10.1503/cmaj.151243. Epub 2016 Apr 25.

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