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Items: 1 to 50 of 88

1.

A novel uncultured marine cyanophage lineage with lysogenic potential linked to a putative marine Synechococcus 'relic' prophage.

Flores-Uribe J, Philosof A, Sharon I, Fridman S, Larom S, Béjà O.

Environ Microbiol Rep. 2019 May 24. doi: 10.1111/1758-2229.12773. [Epub ahead of print]

PMID:
31125500
2.

Engineered Functional Recovery of Microbial Rhodopsin without Retinal-Binding Lysine.

Yamauchi Y, Konno M, Yamada D, Yura K, Inoue K, Béjà O, Kandori H.

Photochem Photobiol. 2019 May 8. doi: 10.1111/php.13114. [Epub ahead of print]

PMID:
31066906
3.

Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche.

Bulzu PA, Andrei AŞ, Salcher MM, Mehrshad M, Inoue K, Kandori H, Beja O, Ghai R, Banciu HL.

Nat Microbiol. 2019 Jul;4(7):1129-1137. doi: 10.1038/s41564-019-0404-y. Epub 2019 Apr 1.

PMID:
30936485
4.

Ultrafast Dynamics of Heliorhodopsins.

Tahara S, Singh M, Kuramochi H, Shihoya W, Inoue K, Nureki O, Béjà O, Mizutani Y, Kandori H, Tahara T.

J Phys Chem B. 2019 Mar 21;123(11):2507-2512. doi: 10.1021/acs.jpcb.9b00887. Epub 2019 Mar 8.

PMID:
30742768
5.

Heliorhodopsins are absent in diderm (Gram-negative) bacteria: Some thoughts and possible implications for activity.

Flores-Uribe J, Hevroni G, Ghai R, Pushkarev A, Inoue K, Kandori H, Béjà O.

Environ Microbiol Rep. 2019 Jun;11(3):419-424. doi: 10.1111/1758-2229.12730. Epub 2019 Jan 21.

PMID:
30618066
6.

Adaptation to sub-optimal hosts is a driver of viral diversification in the ocean.

Enav H, Kirzner S, Lindell D, Mandel-Gutfreund Y, Béjà O.

Nat Commun. 2018 Nov 8;9(1):4698. doi: 10.1038/s41467-018-07164-3.

7.

Resonance Raman Investigation of the Chromophore Structure of Heliorhodopsins.

Otomo A, Mizuno M, Singh M, Shihoya W, Inoue K, Nureki O, Béjà O, Kandori H, Mizutani Y.

J Phys Chem Lett. 2018 Nov 15;9(22):6431-6436. doi: 10.1021/acs.jpclett.8b02741. Epub 2018 Oct 29.

PMID:
30351947
8.

Mutation Study of Heliorhodopsin 48C12.

Singh M, Inoue K, Pushkarev A, Béjà O, Kandori H.

Biochemistry. 2018 Aug 21;57(33):5041-5049. doi: 10.1021/acs.biochem.8b00637. Epub 2018 Aug 6.

PMID:
30036039
9.

A distinct abundant group of microbial rhodopsins discovered using functional metagenomics.

Pushkarev A, Inoue K, Larom S, Flores-Uribe J, Singh M, Konno M, Tomida S, Ito S, Nakamura R, Tsunoda SP, Philosof A, Sharon I, Yutin N, Koonin EV, Kandori H, Béjà O.

Nature. 2018 Jun;558(7711):595-599. doi: 10.1038/s41586-018-0225-9. Epub 2018 Jun 20.

PMID:
29925949
10.

The Use of a Chimeric Rhodopsin Vector for the Detection of New Proteorhodopsins Based on Color.

Pushkarev A, Hevroni G, Roitman S, Shim JG, Choi A, Jung KH, Béjà O.

Front Microbiol. 2018 Mar 13;9:439. doi: 10.3389/fmicb.2018.00439. eCollection 2018.

11.

Evolution and molecular mechanism of four-electron reducing ferredoxin-dependent bilin reductases from oceanic phages.

Ledermann B, Schwan M, Sommerkamp JA, Hofmann E, Béjà O, Frankenberg-Dinkel N.

FEBS J. 2018 Jan;285(2):339-356. doi: 10.1111/febs.14341. Epub 2017 Dec 2.

12.

Cyanophage-encoded lipid desaturases: oceanic distribution, diversity and function.

Roitman S, Hornung E, Flores-Uribe J, Sharon I, Feussner I, Béjà O.

ISME J. 2018 Feb;12(2):343-355. doi: 10.1038/ismej.2017.159. Epub 2017 Oct 13.

13.

A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells.

Fridman S, Flores-Uribe J, Larom S, Alalouf O, Liran O, Yacoby I, Salama F, Bailleul B, Rappaport F, Ziv T, Sharon I, Cornejo-Castillo FM, Philosof A, Dupont CL, Sánchez P, Acinas SG, Rohwer FL, Lindell D, Béjà O.

Nat Microbiol. 2017 Oct;2(10):1350-1357. doi: 10.1038/s41564-017-0002-9. Epub 2017 Aug 7.

PMID:
28785078
14.

Novel Abundant Oceanic Viruses of Uncultured Marine Group II Euryarchaeota.

Philosof A, Yutin N, Flores-Uribe J, Sharon I, Koonin EV, Béjà O.

Curr Biol. 2017 May 8;27(9):1362-1368. doi: 10.1016/j.cub.2017.03.052. Epub 2017 Apr 27.

15.

Functional marine metagenomic screening for anti-quorum sensing and anti-biofilm activity.

Yaniv K, Golberg K, Kramarsky-Winter E, Marks R, Pushkarev A, Béjà O, Kushmaro A.

Biofouling. 2017 Jan;33(1):1-13. doi: 10.1080/08927014.2016.1253684. Epub 2016 Nov 24.

PMID:
27882771
16.

Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Pinhassi J, DeLong EF, Béjà O, González JM, Pedrós-Alió C.

Microbiol Mol Biol Rev. 2016 Sep 14;80(4):929-54. doi: 10.1128/MMBR.00003-16. Print 2016 Dec. Review.

17.

New biosynthetic pathway for pink pigments from uncultured oceanic viruses.

Ledermann B, Béjà O, Frankenberg-Dinkel N.

Environ Microbiol. 2016 Dec;18(12):4337-4347. doi: 10.1111/1462-2920.13290. Epub 2016 Apr 30.

PMID:
26950653
18.

Functional metagenomic screen reveals new and diverse microbial rhodopsins.

Pushkarev A, Béjà O.

ISME J. 2016 Sep;10(9):2331-5. doi: 10.1038/ismej.2016.7. Epub 2016 Feb 19.

19.

Closing the gaps on the viral photosystem-I psaDCAB gene organization.

Roitman S, Flores-Uribe J, Philosof A, Knowles B, Rohwer F, Ignacio-Espinoza JC, Sullivan MB, Cornejo-Castillo FM, Sánchez P, Acinas SG, Dupont CL, Béjà O.

Environ Microbiol. 2015 Dec;17(12):5100-8. doi: 10.1111/1462-2920.13036. Epub 2015 Oct 14.

20.

Diversity of viral photosystem-I psaA genes.

Hevroni G, Enav H, Rohwer F, Béjà O.

ISME J. 2015 Aug;9(8):1892-8. doi: 10.1038/ismej.2014.244. Epub 2014 Dec 23.

21.

Nature's toolkit for microbial rhodopsin ion pumps.

Béjà O, Lanyi JK.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6538-9. doi: 10.1073/pnas.1405093111. Epub 2014 Apr 15. No abstract available.

22.

Comparative metagenomic analyses reveal viral-induced shifts of host metabolism towards nucleotide biosynthesis.

Enav H, Mandel-Gutfreund Y, Béjà O.

Microbiome. 2014 Mar 26;2(1):9. doi: 10.1186/2049-2618-2-9.

23.

Preparation of BAC libraries from marine microbial populations.

Sabehi G, Béjà O.

Methods Enzymol. 2013;531:111-22. doi: 10.1016/B978-0-12-407863-5.00006-X.

PMID:
24060118
24.

Dead Sea rhodopsins revisited.

Bodaker I, Suzuki MT, Oren A, Béjà O.

Environ Microbiol Rep. 2012 Dec;4(6):617-21. doi: 10.1111/j.1758-2229.2012.00377.x. Epub 2012 Sep 3.

PMID:
23760932
25.

Bacterial, archaeal and viral-like rhodopsins from the Red Sea.

Philosof A, Béjà O.

Environ Microbiol Rep. 2013 Jun;5(3):475-82. doi: 10.1111/1758-2229.12037. Epub 2013 Feb 17.

PMID:
23754728
26.

The evolution of photosystem I in light of phage-encoded reaction centres.

Mazor Y, Greenberg I, Toporik H, Beja O, Nelson N.

Philos Trans R Soc Lond B Biol Sci. 2012 Dec 19;367(1608):3400-5. doi: 10.1098/rstb.2012.0057. Review.

27.

Global abundance of microbial rhodopsins.

Finkel OM, Béjà O, Belkin S.

ISME J. 2013 Feb;7(2):448-51. doi: 10.1038/ismej.2012.112. Epub 2012 Oct 11.

28.

Bacterial anoxygenic photosynthesis on plant leaf surfaces.

Atamna-Ismaeel N, Finkel O, Glaser F, von Mering C, Vorholt JA, Koblížek M, Belkin S, Béjà O.

Environ Microbiol Rep. 2012 Apr;4(2):209-16. doi: 10.1111/j.1758-2229.2011.00323.x. Epub 2012 Jan 16.

PMID:
23757275
29.

Viral clones from the GOS expedition with an unusual photosystem-I gene cassette organization.

Béjà O, Fridman S, Glaser F.

ISME J. 2012 Aug;6(8):1617-20. doi: 10.1038/ismej.2012.23. Epub 2012 Mar 29.

30.

Cyanophage tRNAs may have a role in cross-infectivity of oceanic Prochlorococcus and Synechococcus hosts.

Enav H, Béjà O, Mandel-Gutfreund Y.

ISME J. 2012 Mar;6(3):619-28. doi: 10.1038/ismej.2011.146. Epub 2011 Oct 20.

31.

Potential for phosphite and phosphonate utilization by Prochlorococcus.

Feingersch R, Philosof A, Mejuch T, Glaser F, Alalouf O, Shoham Y, Béjà O.

ISME J. 2012 Apr;6(4):827-34. doi: 10.1038/ismej.2011.149. Epub 2011 Oct 20.

32.

Microbial rhodopsins on leaf surfaces of terrestrial plants.

Atamna-Ismaeel N, Finkel OM, Glaser F, Sharon I, Schneider R, Post AF, Spudich JL, von Mering C, Vorholt JA, Iluz D, Béjà O, Belkin S.

Environ Microbiol. 2012 Jan;14(1):140-6. doi: 10.1111/j.1462-2920.2011.02554.x. Epub 2011 Sep 1.

33.

Marine cyanophages: tinkering with the electron transport chain.

Philosof A, Battchikova N, Aro EM, Béjà O.

ISME J. 2011 Oct;5(10):1568-70. doi: 10.1038/ismej.2011.43. Epub 2011 Apr 21. No abstract available.

34.

Comparative metagenomics of microbial traits within oceanic viral communities.

Sharon I, Battchikova N, Aro EM, Giglione C, Meinnel T, Glaser F, Pinter RY, Breitbart M, Rohwer F, Béjà O.

ISME J. 2011 Jul;5(7):1178-90. doi: 10.1038/ismej.2011.2. Epub 2011 Feb 10.

35.

Is dinitrogen fixation significant in the Levantine Basin, East Mediterranean Sea?

Yogev T, Rahav E, Bar-Zeev E, Man-Aharonovich D, Stambler N, Kress N, Béjà O, Mulholland MR, Herut B, Berman-Frank I.

Environ Microbiol. 2011 Apr;13(4):854-71. doi: 10.1111/j.1462-2920.2010.02402.x. Epub 2011 Jan 18.

PMID:
21244595
36.

Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets.

Alperovitch-Lavy A, Sharon I, Rohwer F, Aro EM, Glaser F, Milo R, Nelson N, Béjà O.

Environ Microbiol. 2011 Jan;13(1):24-32. doi: 10.1111/j.1462-2920.2010.02304.x.

PMID:
20649642
37.

Proteorhodopsin-bearing bacteria in Antarctic sea ice.

Koh EY, Atamna-Ismaeel N, Martin A, Cowie RO, Beja O, Davy SK, Maas EW, Ryan KG.

Appl Environ Microbiol. 2010 Sep;76(17):5918-25. doi: 10.1128/AEM.00562-10. Epub 2010 Jul 2.

38.

The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times.

DeLong EF, Béjà O.

PLoS Biol. 2010 Apr 27;8(4):e1000359. doi: 10.1371/journal.pbio.1000359. No abstract available. Erratum in: PLoS Biol. 2012 May;10(5): doi/10.1371/annotation/590a9ab4-5736-4f11-a93a-a31f25990d96. PLoS Biol. 2012 May;10(5): doi/10.1371/annotation/9505d865-7e1e-4f1e-84a0-f568d8552414. PLoS Biol. 2012 May;10(5): doi/10.1371/annotation/6830e1ff-b565-4054-bae6-02939f625cfe. PLoS Biol. 2012 May;10(5): doi/10.1371/annotation/a9234cc3-a14f-4c3f-8be6-645bfeca2b6c. PLoS Biol. 2012 May;10(5): doi/10.1371/annotation/fe6ae2ff-6778-4581-8d52-4aba3534c99f. PLoS Biol. 2012 May;10(5): doi/10.1371/annotation/65474650-89c5-4b56-80e8-6e513347d3d7. PLoS Biol. 2012 May;10(5): doi/10.1371/annotation/571dcbb4-cac9-4c84-9f9e-27cc87ceed0e. PLoS Biol. 2012 May;10(5): doi/10.1371/annotation/48a18f09-0a1a-469e-8c0d-b352e80200bc. PLoS Biol. 2012 May;10(5): doi/10.1371/annotation/05d3c1ef-0aad-4592-ab8d-6863fbdf73f9. PLoS Biol. 2012 May;10(5): doi/10.1371/annotation/a260c562-9d55-452e-84fa-f33ce59b9704.

39.

Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts.

Man-Aharonovich D, Philosof A, Kirkup BC, Le Gall F, Yogev T, Berman-Frank I, Polz MF, Vaulot D, Béjà O.

ISME J. 2010 Aug;4(8):1044-52. doi: 10.1038/ismej.2010.25. Epub 2010 Mar 18.

PMID:
20237514
40.

Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways.

Mano A, Tuller T, Béjà O, Pinter RY.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S38. doi: 10.1186/1471-2105-11-S1-S38.

41.

Comparative community genomics in the Dead Sea: an increasingly extreme environment.

Bodaker I, Sharon I, Suzuki MT, Feingersch R, Shmoish M, Andreishcheva E, Sogin ML, Rosenberg M, Maguire ME, Belkin S, Oren A, Béjà O.

ISME J. 2010 Mar;4(3):399-407. doi: 10.1038/ismej.2009.141. Epub 2009 Dec 24.

PMID:
20033072
42.

BchY-based degenerate primers target all types of anoxygenic photosynthetic bacteria in a single PCR.

Yutin N, Suzuki MT, Rosenberg M, Rotem D, Madigan MT, Süling J, Imhoff JF, Béjà O.

Appl Environ Microbiol. 2009 Dec;75(23):7556-9. doi: 10.1128/AEM.01014-09. Epub 2009 Oct 2.

43.

Photosystem I gene cassettes are present in marine virus genomes.

Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI, Nelson N, Béjà O.

Nature. 2009 Sep 10;461(7261):258-262. doi: 10.1038/nature08284. Epub 2009 Aug 26.

44.

Microbial community genomics in eastern Mediterranean Sea surface waters.

Feingersch R, Suzuki MT, Shmoish M, Sharon I, Sabehi G, Partensky F, Béjà O.

ISME J. 2010 Jan;4(1):78-87. doi: 10.1038/ismej.2009.92. Epub 2009 Aug 20.

PMID:
19693100
45.

Comparative analyses of actinobacterial genomic fragments from Lake Kinneret.

Philosof A, Sabehi G, Béjà O.

Environ Microbiol. 2009 Dec;11(12):3189-200. doi: 10.1111/j.1462-2920.2009.02024.x. Epub 2009 Aug 12.

PMID:
19678830
46.

Bias in assessments of marine SAR11 biodiversity in environmental fosmid and BAC libraries?

Feingersch R, Béjà O.

ISME J. 2009 Oct;3(10):1117-9. doi: 10.1038/ismej.2009.80. Epub 2009 Jul 2. No abstract available.

PMID:
19571894
47.

A supervised learning approach for taxonomic classification of core-photosystem-II genes and transcripts in the marine environment.

Tzahor S, Man-Aharonovich D, Kirkup BC, Yogev T, Berman-Frank I, Polz MF, Béjà O, Mandel-Gutfreund Y.

BMC Genomics. 2009 May 16;10:229. doi: 10.1186/1471-2164-10-229.

48.

Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes.

Loy A, Duller S, Baranyi C, Mussmann M, Ott J, Sharon I, Béjà O, Le Paslier D, Dahl C, Wagner M.

Environ Microbiol. 2009 Feb;11(2):289-99. doi: 10.1111/j.1462-2920.2008.01760.x. Epub 2008 Sep 26.

49.

Seasonal dynamics of the endosymbiotic, nitrogen-fixing cyanobacterium Richelia intracellularis in the eastern Mediterranean Sea.

Zeev EB, Yogev T, Man-Aharonovich D, Kress N, Herut B, Béjà O, Berman-Frank I.

ISME J. 2008 Sep;2(9):911-23. doi: 10.1038/ismej.2008.56. Epub 2008 Jun 26.

PMID:
18580972
50.

Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems.

Atamna-Ismaeel N, Sabehi G, Sharon I, Witzel KP, Labrenz M, Jürgens K, Barkay T, Stomp M, Huisman J, Beja O.

ISME J. 2008 Jun;2(6):656-62. doi: 10.1038/ismej.2008.27. Epub 2008 Mar 27. Erratum in: ISME J. 2010 Mar;4(3):462.

PMID:
18369329

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