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Items: 38

1.

A Kelch13-defined endocytosis pathway mediates artemisinin resistance in malaria parasites.

Birnbaum J, Scharf S, Schmidt S, Jonscher E, Hoeijmakers WAM, Flemming S, Toenhake CG, Schmitt M, Sabitzki R, Bergmann B, Fröhlke U, Mesén-Ramírez P, Blancke Soares A, Herrmann H, Bártfai R, Spielmann T.

Science. 2020 Jan 3;367(6473):51-59. doi: 10.1126/science.aax4735.

PMID:
31896710
2.

Epigenetic reader complexes of the human malaria parasite, Plasmodium falciparum.

Hoeijmakers WAM, Miao J, Schmidt S, Toenhake CG, Shrestha S, Venhuizen J, Henderson R, Birnbaum J, Ghidelli-Disse S, Drewes G, Cui L, Stunnenberg HG, Spielmann T, Bártfai R.

Nucleic Acids Res. 2019 Dec 16;47(22):11574-11588. doi: 10.1093/nar/gkz1044.

PMID:
31728527
3.

Gene knockdown in malaria parasites via non-canonical RNAi.

Hentzschel F, Mitesser V, Fraschka SA, Krzikalla D, Carrillo EH, Berkhout B, Bártfai R, Mueller AK, Grimm D.

Nucleic Acids Res. 2020 Jan 10;48(1):e2. doi: 10.1093/nar/gkz927.

PMID:
31680162
4.

What functional genomics has taught us about transcriptional regulation in malaria parasites.

Toenhake CG, Bártfai R.

Brief Funct Genomics. 2019 Sep 24;18(5):290-301. doi: 10.1093/bfgp/elz004.

5.

Chromatin Accessibility-Based Characterization of the Gene Regulatory Network Underlying Plasmodium falciparum Blood-Stage Development.

Toenhake CG, Fraschka SA, Vijayabaskar MS, Westhead DR, van Heeringen SJ, Bártfai R.

Cell Host Microbe. 2018 Apr 11;23(4):557-569.e9. doi: 10.1016/j.chom.2018.03.007.

6.

GDV1 induces sexual commitment of malaria parasites by antagonizing HP1-dependent gene silencing.

Filarsky M, Fraschka SA, Niederwieser I, Brancucci NMB, Carrington E, Carrió E, Moes S, Jenoe P, Bártfai R, Voss TS.

Science. 2018 Mar 16;359(6381):1259-1263. doi: 10.1126/science.aan6042.

7.

Comparative Heterochromatin Profiling Reveals Conserved and Unique Epigenome Signatures Linked to Adaptation and Development of Malaria Parasites.

Fraschka SA, Filarsky M, Hoo R, Niederwieser I, Yam XY, Brancucci NMB, Mohring F, Mushunje AT, Huang X, Christensen PR, Nosten F, Bozdech Z, Russell B, Moon RW, Marti M, Preiser PR, Bártfai R, Voss TS.

Cell Host Microbe. 2018 Mar 14;23(3):407-420.e8. doi: 10.1016/j.chom.2018.01.008. Epub 2018 Mar 1.

8.

Characterization of the Nucleosome Landscape by Micrococcal Nuclease-Sequencing (MNase-seq).

Hoeijmakers WAM, Bártfai R.

Methods Mol Biol. 2018;1689:83-101. doi: 10.1007/978-1-4939-7380-4_8.

PMID:
29027167
9.

Malaria parasites possess a telomere repeat-binding protein that shares ancestry with transcription factor IIIA.

Bertschi NL, Toenhake CG, Zou A, Niederwieser I, Henderson R, Moes S, Jenoe P, Parkinson J, Bartfai R, Voss TS.

Nat Microbiol. 2017 Mar 13;2:17033. doi: 10.1038/nmicrobiol.2017.33.

PMID:
28288093
10.
11.

Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes: molecular insight into sex-specific processes and translational repression.

Lasonder E, Rijpma SR, van Schaijk BC, Hoeijmakers WA, Kensche PR, Gresnigt MS, Italiaander A, Vos MW, Woestenenk R, Bousema T, Mair GR, Khan SM, Janse CJ, Bártfai R, Sauerwein RW.

Nucleic Acids Res. 2016 Jul 27;44(13):6087-101. doi: 10.1093/nar/gkw536. Epub 2016 Jun 13.

12.

The nucleosome landscape of Plasmodium falciparum reveals chromatin architecture and dynamics of regulatory sequences.

Kensche PR, Hoeijmakers WA, Toenhake CG, Bras M, Chappell L, Berriman M, Bártfai R.

Nucleic Acids Res. 2016 Mar 18;44(5):2110-24. doi: 10.1093/nar/gkv1214. Epub 2015 Nov 17.

13.

Epigenetic memory takes center stage in the survival strategy of malaria parasites.

Voss TS, Bozdech Z, Bártfai R.

Curr Opin Microbiol. 2014 Aug;20:88-95. doi: 10.1016/j.mib.2014.05.007. Epub 2014 Jun 17. Review.

PMID:
24945736
14.

Gonad differentiation in zebrafish is regulated by the canonical Wnt signaling pathway.

Sreenivasan R, Jiang J, Wang X, Bártfai R, Kwan HY, Christoffels A, Orbán L.

Biol Reprod. 2014 Feb 27;90(2):45. doi: 10.1095/biolreprod.113.110874. Print 2014 Feb.

PMID:
24174574
15.

H2A.Z/H2B.Z double-variant nucleosomes inhabit the AT-rich promoter regions of the Plasmodium falciparum genome.

Hoeijmakers WA, Salcedo-Amaya AM, Smits AH, Françoijs KJ, Treeck M, Gilberger TW, Stunnenberg HG, Bártfai R.

Mol Microbiol. 2013 Mar;87(5):1061-73. doi: 10.1111/mmi.12151. Epub 2013 Jan 28.

16.

Placing the Plasmodium falciparum epigenome on the map.

Hoeijmakers WA, Stunnenberg HG, Bártfai R.

Trends Parasitol. 2012 Nov;28(11):486-95. doi: 10.1016/j.pt.2012.08.006. Epub 2012 Sep 18. Review.

PMID:
22999479
17.

Transcriptome analysis using RNA-Seq.

Hoeijmakers WA, Bártfai R, Stunnenberg HG.

Methods Mol Biol. 2013;923:221-39.

PMID:
22990781
18.

Plasmodium falciparum centromeres display a unique epigenetic makeup and cluster prior to and during schizogony.

Hoeijmakers WA, Flueck C, Françoijs KJ, Smits AH, Wetzel J, Volz JC, Cowman AF, Voss T, Stunnenberg HG, Bártfai R.

Cell Microbiol. 2012 Sep;14(9):1391-401. doi: 10.1111/j.1462-5822.2012.01803.x. Epub 2012 May 15.

PMID:
22507744
19.

Polygenic sex determination system in zebrafish.

Liew WC, Bartfai R, Lim Z, Sreenivasan R, Siegfried KR, Orban L.

PLoS One. 2012;7(4):e34397. doi: 10.1371/journal.pone.0034397. Epub 2012 Apr 10.

20.

PfSET10, a Plasmodium falciparum methyltransferase, maintains the active var gene in a poised state during parasite division.

Volz JC, Bártfai R, Petter M, Langer C, Josling GA, Tsuboi T, Schwach F, Baum J, Rayner JC, Stunnenberg HG, Duffy MF, Cowman AF.

Cell Host Microbe. 2012 Jan 19;11(1):7-18. doi: 10.1016/j.chom.2011.11.011.

21.

Experimentally controlled downregulation of the histone chaperone FACT in Plasmodium berghei reveals that it is critical to male gamete fertility.

Laurentino EC, Taylor S, Mair GR, Lasonder E, Bartfai R, Stunnenberg HG, Kroeze H, Ramesar J, Franke-Fayard B, Khan SM, Janse CJ, Waters AP.

Cell Microbiol. 2011 Dec;13(12):1956-74. doi: 10.1111/j.1462-5822.2011.01683.x. Epub 2011 Oct 14.

22.

Linear amplification for deep sequencing.

Hoeijmakers WA, Bártfai R, Françoijs KJ, Stunnenberg HG.

Nat Protoc. 2011 Jun 23;6(7):1026-36. doi: 10.1038/nprot.2011.345.

PMID:
21720315
23.

A genome-wide chromatin-associated nuclear peroxiredoxin from the malaria parasite Plasmodium falciparum.

Richard D, Bartfai R, Volz J, Ralph SA, Muller S, Stunnenberg HG, Cowman AF.

J Biol Chem. 2011 Apr 1;286(13):11746-55. doi: 10.1074/jbc.M110.198499. Epub 2011 Jan 31.

24.

H2A.Z demarcates intergenic regions of the plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3.

Bártfai R, Hoeijmakers WA, Salcedo-Amaya AM, Smits AH, Janssen-Megens E, Kaan A, Treeck M, Gilberger TW, Françoijs KJ, Stunnenberg HG.

PLoS Pathog. 2010 Dec 16;6(12):e1001223. doi: 10.1371/journal.ppat.1001223.

25.

Malaria: could its unusual epigenome be the weak spot?

Salcedo-Amaya AM, Hoeijmakers WA, Bártfai R, Stunnenberg HG.

Int J Biochem Cell Biol. 2010 Jun;42(6):781-4. doi: 10.1016/j.biocel.2010.03.010. Epub 2010 Mar 18. Review.

PMID:
20303414
26.

A major role for the Plasmodium falciparum ApiAP2 protein PfSIP2 in chromosome end biology.

Flueck C, Bartfai R, Niederwieser I, Witmer K, Alako BT, Moes S, Bozdech Z, Jenoe P, Stunnenberg HG, Voss TS.

PLoS Pathog. 2010 Feb 26;6(2):e1000784. doi: 10.1371/journal.ppat.1000784.

27.

Plasmodium falciparum heterochromatin protein 1 marks genomic loci linked to phenotypic variation of exported virulence factors.

Flueck C, Bartfai R, Volz J, Niederwieser I, Salcedo-Amaya AM, Alako BT, Ehlgen F, Ralph SA, Cowman AF, Bozdech Z, Stunnenberg HG, Voss TS.

PLoS Pathog. 2009 Sep;5(9):e1000569. doi: 10.1371/journal.ppat.1000569. Epub 2009 Sep 4.

28.

Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools.

Li Y, Chia JM, Bartfai R, Christoffels A, Yue GH, Ding K, Ho MY, Hill JA, Stupka E, Orban L.

Comp Funct Genomics. 2004;5(5):403-18. doi: 10.1002/cfg.418.

29.

Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain.

Sreenivasan R, Cai M, Bartfai R, Wang X, Christoffels A, Orban L.

PLoS One. 2008 Mar 12;3(3):e1791. doi: 10.1371/journal.pone.0001791.

30.

Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome.

Christoffels A, Bartfai R, Srinivasan H, Komen H, Orban L.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S2.

31.

TBP2, a vertebrate-specific member of the TBP family, is required in embryonic development of zebrafish.

Bártfai R, Balduf C, Hilton T, Rathmann Y, Hadzhiev Y, Tora L, Orbán L, Müller F.

Curr Biol. 2004 Apr 6;14(7):593-8.

32.

The vasa locus in zebrafish: multiple RGG boxes from duplications.

Bártfai R, Orbán L.

DNA Cell Biol. 2003 Jan;22(1):47-54.

PMID:
12590737
33.

Considerations in the treatment of the node-negative (N0) neck in glottic carcinomas.

Elô J, Balatoni Z, Kótai Z, Bártfai R.

Pathol Oncol Res. 2002;8(4):257-61. Epub 2003 Feb 11.

34.

Male-specific DNA markers from African catfish (Clarias gariepinus).

Kovács B, Egedi S, Bártfai R, Orbán L.

Genetica. 2000;110(3):267-76.

PMID:
11766847
35.

Heat-inducible expression of a reporter gene detected by transient assay in zebrafish.

Adám A, Bártfai R, Lele Z, Krone PH, Orbán L.

Exp Cell Res. 2000 Apr 10;256(1):282-90.

PMID:
10739675
36.

Breast volume measurement of 598 women using biostereometric analysis.

Loughry CW, Sheffer DB, Price TE, Einsporn RL, Bartfai RG, Morek WM, Meli NM.

Ann Plast Surg. 1989 May;22(5):380-5.

PMID:
2729845
37.

Breast volume measurement of 248 women using biostereometric analysis.

Loughry CW, Sheffer DB, Price TE Jr, Lackney MJ, Bartfai RG, Morek WM.

Plast Reconstr Surg. 1987 Oct;80(4):553-8.

PMID:
3659165
38.

Right and left breast volume and volume distribution comparisons in normal and tumor-containing breasts.

Loughry CW, Sheffer DB, Price TE Jr, Bartfai RG, Morek WM, Lackney MJ, Bolyard BR.

Cancer Detect Prev. 1987;10(3-4):215-21.

PMID:
3568018

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