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Items: 22

1.

The genetic basis of natural variation in mushroom body size in Drosophila melanogaster.

Zwarts L, Vanden Broeck L, Cappuyns E, Ayroles JF, Magwire MM, Vulsteke V, Clements J, Mackay TF, Callaerts P.

Nat Commun. 2015 Dec 11;6:10115. doi: 10.1038/ncomms10115.

2.

Behavioral idiosyncrasy reveals genetic control of phenotypic variability.

Ayroles JF, Buchanan SM, O'Leary C, Skutt-Kakaria K, Grenier JK, Clark AG, Hartl DL, de Bivort BL.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):6706-11. doi: 10.1073/pnas.1503830112. Epub 2015 May 7.

3.

Hybridization occurs between Drosophila simulans and D. sechellia in the Seychelles archipelago.

Matute DR, Ayroles JF.

J Evol Biol. 2014 Jun;27(6):1057-68. doi: 10.1111/jeb.12391. Epub 2014 Apr 28.

4.

Genetic incompatibilities are widespread within species.

Corbett-Detig RB, Zhou J, Clark AG, Hartl DL, Ayroles JF.

Nature. 2013 Dec 5;504(7478):135-7. doi: 10.1038/nature12678. Epub 2013 Nov 6.

5.

Genomic variation and its impact on gene expression in Drosophila melanogaster.

Massouras A, Waszak SM, Albarca-Aguilera M, Hens K, Holcombe W, Ayroles JF, Dermitzakis ET, Stone EA, Jensen JD, Mackay TF, Deplancke B.

PLoS Genet. 2012;8(11):e1003055. doi: 10.1371/journal.pgen.1003055. Epub 2012 Nov 15.

6.

Epistasis dominates the genetic architecture of Drosophila quantitative traits.

Huang W, Richards S, Carbone MA, Zhu D, Anholt RR, Ayroles JF, Duncan L, Jordan KW, Lawrence F, Magwire MM, Warner CB, Blankenburg K, Han Y, Javaid M, Jayaseelan J, Jhangiani SN, Muzny D, Ongeri F, Perales L, Wu YQ, Zhang Y, Zou X, Stone EA, Gibbs RA, Mackay TF.

Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):15553-9. Epub 2012 Sep 4.

7.

Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster.

Ober U, Ayroles JF, Stone EA, Richards S, Zhu D, Gibbs RA, Stricker C, Gianola D, Schlather M, Mackay TF, Simianer H.

PLoS Genet. 2012;8(5):e1002685. doi: 10.1371/journal.pgen.1002685. Epub 2012 May 3.

8.

The Drosophila melanogaster Genetic Reference Panel.

Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, Carbone MA, Castellano D, Chaboub L, Duncan L, Harris Z, Javaid M, Jayaseelan JC, Jhangiani SN, Jordan KW, Lara F, Lawrence F, Lee SL, Librado P, Linheiro RS, Lyman RF, Mackey AJ, Munidasa M, Muzny DM, Nazareth L, Newsham I, Perales L, Pu LL, Qu C, Ràmia M, Reid JG, Rollmann SM, Rozas J, Saada N, Turlapati L, Worley KC, Wu YQ, Yamamoto A, Zhu Y, Bergman CM, Thornton KR, Mittelman D, Gibbs RA.

Nature. 2012 Feb 8;482(7384):173-8. doi: 10.1038/nature10811.

9.

Functional genome annotation of Drosophila seminal fluid proteins using transcriptional genetic networks.

Ayroles JF, Laflamme BA, Stone EA, Wolfner MF, Mackay TF.

Genet Res (Camb). 2011 Dec;93(6):387-95. doi: 10.1017/S0016672311000346.

10.

Museum genomics: low-cost and high-accuracy genetic data from historical specimens.

Rowe KC, Singhal S, Macmanes MD, Ayroles JF, Morelli TL, Rubidge EM, Bi K, Moritz CC.

Mol Ecol Resour. 2011 Nov;11(6):1082-92. doi: 10.1111/j.1755-0998.2011.03052.x. Epub 2011 Jul 25.

PMID:
21791033
11.

Systems genetics analysis of body weight and energy metabolism traits in Drosophila melanogaster.

Jumbo-Lucioni P, Ayroles JF, Chambers MM, Jordan KW, Leips J, Mackay TF, De Luca M.

BMC Genomics. 2010 May 11;11:297. doi: 10.1186/1471-2164-11-297.

12.

Individual variation in pheromone response correlates with reproductive traits and brain gene expression in worker honey bees.

Kocher SD, Ayroles JF, Stone EA, Grozinger CM.

PLoS One. 2010 Feb 9;5(2):e9116. doi: 10.1371/journal.pone.0009116.

13.

Alcohol sensitivity in Drosophila: translational potential of systems genetics.

Morozova TV, Ayroles JF, Jordan KW, Duncan LH, Carbone MA, Lyman RF, Stone EA, Govindaraju DR, Ellison RC, Mackay TF, Anholt RR.

Genetics. 2009 Oct;183(2):733-45, 1SI-12SI. doi: 10.1534/genetics.109.107490. Epub 2009 Aug 3.

14.

A genomewide assessment of inbreeding depression: gene number, function, and mode of action.

Ayroles JF, Hughes KA, Rowe KC, Reedy MM, Rodriguez-Zas SL, Drnevich JM, Cáceres CE, Paige KN.

Conserv Biol. 2009 Aug;23(4):920-30. doi: 10.1111/j.1523-1739.2009.01186.x.

PMID:
19627320
15.

A transcriptional network associated with natural variation in Drosophila aggressive behavior.

Edwards AC, Ayroles JF, Stone EA, Carbone MA, Lyman RF, Mackay TF.

Genome Biol. 2009;10(7):R76. doi: 10.1186/gb-2009-10-7-r76. Epub 2009 Jul 16.

16.

The genetics of quantitative traits: challenges and prospects.

Mackay TF, Stone EA, Ayroles JF.

Nat Rev Genet. 2009 Aug;10(8):565-77. doi: 10.1038/nrg2612. Review.

PMID:
19584810
17.

Modulated modularity clustering as an exploratory tool for functional genomic inference.

Stone EA, Ayroles JF.

PLoS Genet. 2009 May;5(5):e1000479. doi: 10.1371/journal.pgen.1000479. Epub 2009 May 8.

18.

Co-regulated transcriptional networks contribute to natural genetic variation in Drosophila sleep.

Harbison ST, Carbone MA, Ayroles JF, Stone EA, Lyman RF, Mackay TF.

Nat Genet. 2009 Mar;41(3):371-5. doi: 10.1038/ng.330. Epub 2009 Feb 22.

19.

Systems genetics of complex traits in Drosophila melanogaster.

Ayroles JF, Carbone MA, Stone EA, Jordan KW, Lyman RF, Magwire MM, Rollmann SM, Duncan LH, Lawrence F, Anholt RR, Mackay TF.

Nat Genet. 2009 Mar;41(3):299-307. doi: 10.1038/ng.332. Epub 2009 Feb 22.

20.

Overexpression of myocilin in the Drosophila eye activates the unfolded protein response: implications for glaucoma.

Carbone MA, Ayroles JF, Yamamoto A, Morozova TV, West SA, Magwire MM, Mackay TF, Anholt RR.

PLoS One. 2009;4(1):e4216. doi: 10.1371/journal.pone.0004216. Epub 2009 Jan 16.

21.

Analysis of variance of microarray data.

Ayroles JF, Gibson G.

Methods Enzymol. 2006;411:214-33. Review.

PMID:
16939792
22.

Segregating variation in the transcriptome: cis regulation and additivity of effects.

Hughes KA, Ayroles JF, Reedy MM, Drnevich JM, Rowe KC, Ruedi EA, Cáceres CE, Paige KN.

Genetics. 2006 Jul;173(3):1347-55. Epub 2006 Apr 19.

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