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Biofilm Formation and Synthesis of Antimicrobial Compounds by the Biocontrol Agent Bacillus velezensis QST713 in an Agaricus bisporus Compost Micromodel.

Pandin C, Darsonval M, Mayeur C, Le Coq D, Aymerich S, Briandet R.

Appl Environ Microbiol. 2019 May 30;85(12). pii: e00327-19. doi: 10.1128/AEM.00327-19. Print 2019 Jun 15.


CalY is a major virulence factor and a biofilm matrix protein.

Candela T, Fagerlund A, Buisson C, Gilois N, Kolstø AB, Økstad OA, Aymerich S, Nielsen-Leroux C, Lereclus D, Gohar M.

Mol Microbiol. 2019 Jun;111(6):1416-1429. doi: 10.1111/mmi.14184. Epub 2019 Apr 15.


Complete genome sequence of Bacillus velezensis QST713: A biocontrol agent that protects Agaricus bisporus crops against the green mould disease.

Pandin C, Le Coq D, Deschamps J, Védie R, Rousseau T, Aymerich S, Briandet R.

J Biotechnol. 2018 Jul 20;278:10-19. doi: 10.1016/j.jbiotec.2018.04.014. Epub 2018 Apr 24.


Molecular and Physiological Logics of the Pyruvate-Induced Response of a Novel Transporter in Bacillus subtilis.

Charbonnier T, Le Coq D, McGovern S, Calabre M, Delumeau O, Aymerich S, Jules M.

MBio. 2017 Oct 3;8(5). pii: e00976-17. doi: 10.1128/mBio.00976-17.


Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis.

Bidnenko V, Nicolas P, Grylak-Mielnicka A, Delumeau O, Auger S, Aucouturier A, Guerin C, Repoila F, Bardowski J, Aymerich S, Bidnenko E.

PLoS Genet. 2017 Jul 19;13(7):e1006909. doi: 10.1371/journal.pgen.1006909. eCollection 2017 Jul.


Should the biofilm mode of life be taken into consideration for microbial biocontrol agents?

Pandin C, Le Coq D, Canette A, Aymerich S, Briandet R.

Microb Biotechnol. 2017 Jul;10(4):719-734. doi: 10.1111/1751-7915.12693. Epub 2017 Feb 16. Review.


Translation elicits a growth rate-dependent, genome-wide, differential protein production in Bacillus subtilis.

Borkowski O, Goelzer A, Schaffer M, Calabre M, Mäder U, Aymerich S, Jules M, Fromion V.

Mol Syst Biol. 2016 May 17;12(5):870. doi: 10.15252/msb.20156608.


Quantitative prediction of genome-wide resource allocation in bacteria.

Goelzer A, Muntel J, Chubukov V, Jules M, Prestel E, Nölker R, Mariadassou M, Aymerich S, Hecker M, Noirot P, Becher D, Fromion V.

Metab Eng. 2015 Nov;32:232-243. doi: 10.1016/j.ymben.2015.10.003. Epub 2015 Oct 21.


Pathogens protection against the action of disinfectants in multispecies biofilms.

Sanchez-Vizuete P, Orgaz B, Aymerich S, Le Coq D, Briandet R.

Front Microbiol. 2015 Jul 14;6:705. doi: 10.3389/fmicb.2015.00705. eCollection 2015. Review.


Identification of ypqP as a New Bacillus subtilis biofilm determinant that mediates the protection of Staphylococcus aureus against antimicrobial agents in mixed-species communities.

Sanchez-Vizuete P, Le Coq D, Bridier A, Herry JM, Aymerich S, Briandet R.

Appl Environ Microbiol. 2015 Jan;81(1):109-18. doi: 10.1128/AEM.02473-14. Epub 2014 Oct 17.


Genome Sequences of Two Nondomesticated Bacillus subtilis Strains Able To Form Thick Biofilms on Submerged Surfaces.

Sanchez-Vizuete P, Tanaka K, Bridier A, Shirae Y, Yoshida K, Bouchez T, Aymerich S, Briandet R, Le Coq D.

Genome Announc. 2014 Sep 25;2(5). pii: e00946-14. doi: 10.1128/genomeA.00946-14.


Division in Escherichia coli is triggered by a size-sensing rather than a timing mechanism.

Robert L, Hoffmann M, Krell N, Aymerich S, Robert J, Doumic M.

BMC Biol. 2014 Feb 28;12:17. doi: 10.1186/1741-7007-12-17.


SinR controls enterotoxin expression in Bacillus thuringiensis biofilms.

Fagerlund A, Dubois T, Økstad OA, Verplaetse E, Gilois N, Bennaceur I, Perchat S, Gominet M, Aymerich S, Kolstø AB, Lereclus D, Gohar M.

PLoS One. 2014 Jan 31;9(1):e87532. doi: 10.1371/journal.pone.0087532. eCollection 2014. Erratum in: PLoS One. 2014;9(4):e96707.


Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis.

Chubukov V, Uhr M, Le Chat L, Kleijn RJ, Jules M, Link H, Aymerich S, Stelling J, Sauer U.

Mol Syst Biol. 2013 Nov 26;9:709. doi: 10.1038/msb.2013.66.


Biofilms of a Bacillus subtilis hospital isolate protect Staphylococcus aureus from biocide action.

Bridier A, Sanchez-Vizuete Mdel P, Le Coq D, Aymerich S, Meylheuc T, Maillard JY, Thomas V, Dubois-Brissonnet F, Briandet R.

PLoS One. 2012;7(9):e44506. doi: 10.1371/journal.pone.0044506. Epub 2012 Sep 4.


Bacterial swimmers that infiltrate and take over the biofilm matrix.

Houry A, Gohar M, Deschamps J, Tischenko E, Aymerich S, Gruss A, Briandet R.

Proc Natl Acad Sci U S A. 2012 Aug 7;109(32):13088-93. doi: 10.1073/pnas.1200791109. Epub 2012 Jul 5.


BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array.

Aïchaoui L, Jules M, Le Chat L, Aymerich S, Fromion V, Goelzer A.

Bioinformatics. 2012 Oct 15;28(20):2705-6. doi: 10.1093/bioinformatics/bts422. Epub 2012 Jul 4.


13C-flux analysis reveals NADPH-balancing transhydrogenation cycles in stationary phase of nitrogen-starving Bacillus subtilis.

Rühl M, Le Coq D, Aymerich S, Sauer U.

J Biol Chem. 2012 Aug 10;287(33):27959-70. doi: 10.1074/jbc.M112.366492. Epub 2012 Jun 27.


Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.

Nicolas P, Mäder U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, Bidnenko E, Marchadier E, Hoebeke M, Aymerich S, Becher D, Bisicchia P, Botella E, Delumeau O, Doherty G, Denham EL, Fogg MJ, Fromion V, Goelzer A, Hansen A, Härtig E, Harwood CR, Homuth G, Jarmer H, Jules M, Klipp E, Le Chat L, Lecointe F, Lewis P, Liebermeister W, March A, Mars RA, Nannapaneni P, Noone D, Pohl S, Rinn B, Rügheimer F, Sappa PK, Samson F, Schaffer M, Schwikowski B, Steil L, Stülke J, Wiegert T, Devine KM, Wilkinson AJ, van Dijl JM, Hecker M, Völker U, Bessières P, Noirot P.

Science. 2012 Mar 2;335(6072):1103-6. doi: 10.1126/science.1206848.


Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.

Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Le Chat L, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn B, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U.

Science. 2012 Mar 2;335(6072):1099-103. doi: 10.1126/science.1206871.


Reconciling molecular regulatory mechanisms with noise patterns of bacterial metabolic promoters in induced and repressed states.

Ferguson ML, Le Coq D, Jules M, Aymerich S, Radulescu O, Declerck N, Royer CA.

Proc Natl Acad Sci U S A. 2012 Jan 3;109(1):155-60. doi: 10.1073/pnas.1110541108. Epub 2011 Dec 21.


Malate-mediated carbon catabolite repression in Bacillus subtilis involves the HPrK/CcpA pathway.

Meyer FM, Jules M, Mehne FM, Le Coq D, Landmann JJ, Görke B, Aymerich S, Stülke J.

J Bacteriol. 2011 Dec;193(24):6939-49. doi: 10.1128/JB.06197-11. Epub 2011 Oct 14.


Absolute quantification of gene expression in individual bacterial cells using two-photon fluctuation microscopy.

Ferguson ML, Le Coq D, Jules M, Aymerich S, Declerck N, Royer CA.

Anal Biochem. 2011 Dec 15;419(2):250-9. doi: 10.1016/j.ab.2011.08.017. Epub 2011 Aug 22.


Prevention of cross-talk in conserved regulatory systems: identification of specificity determinants in RNA-binding anti-termination proteins of the BglG family.

Hübner S, Declerck N, Diethmaier C, Le Coq D, Aymerich S, Stülke J.

Nucleic Acids Res. 2011 May;39(10):4360-72. doi: 10.1093/nar/gkr021. Epub 2011 Jan 28.


The spatial architecture of Bacillus subtilis biofilms deciphered using a surface-associated model and in situ imaging.

Bridier A, Le Coq D, Dubois-Brissonnet F, Thomas V, Aymerich S, Briandet R.

PLoS One. 2011 Jan 18;6(1):e16177. doi: 10.1371/journal.pone.0016177.


Comprehensive identification and quantification of microbial transcriptomes by genome-wide unbiased methods.

Mäder U, Nicolas P, Richard H, Bessières P, Aymerich S.

Curr Opin Biotechnol. 2011 Feb;22(1):32-41. doi: 10.1016/j.copbio.2010.10.003. Epub 2010 Nov 10. Review.


NADH oxidase activity of Bacillus subtilis nitroreductase NfrA1: insight into its biological role.

Cortial S, Chaignon P, Iorga BI, Aymerich S, Truan G, Gueguen-Chaignon V, Meyer P, Moréra S, Ouazzani J.

FEBS Lett. 2010 Sep 24;584(18):3916-22. doi: 10.1016/j.febslet.2010.08.019. Epub 2010 Aug 18.


pBaSysBioII: an integrative plasmid generating gfp transcriptional fusions for high-throughput analysis of gene expression in Bacillus subtilis.

Botella E, Fogg M, Jules M, Piersma S, Doherty G, Hansen A, Denham EL, Le Chat L, Veiga P, Bailey K, Lewis PJ, van Dijl JM, Aymerich S, Wilkinson AJ, Devine KM.

Microbiology. 2010 Jun;156(Pt 6):1600-8. doi: 10.1099/mic.0.035758-0. Epub 2010 Feb 11.


Involvement of motility and flagella in Bacillus cereus biofilm formation.

Houry A, Briandet R, Aymerich S, Gohar M.

Microbiology. 2010 Apr;156(Pt 4):1009-18. doi: 10.1099/mic.0.034827-0. Epub 2009 Dec 24.


Metabolic fluxes during strong carbon catabolite repression by malate in Bacillus subtilis.

Kleijn RJ, Buescher JM, Le Chat L, Jules M, Aymerich S, Sauer U.

J Biol Chem. 2010 Jan 15;285(3):1587-96. doi: 10.1074/jbc.M109.061747. Epub 2009 Nov 16.


Biofilm formation and cell surface properties among pathogenic and nonpathogenic strains of the Bacillus cereus group.

Auger S, Ramarao N, Faille C, Fouet A, Aymerich S, Gohar M.

Appl Environ Microbiol. 2009 Oct;75(20):6616-8. doi: 10.1128/AEM.00155-09. Epub 2009 Jul 31.


The Bacillus subtilis ywjI (glpX) gene encodes a class II fructose-1,6-bisphosphatase, functionally equivalent to the class III Fbp enzyme.

Jules M, Le Chat L, Aymerich S, Le Coq D.

J Bacteriol. 2009 May;191(9):3168-71. doi: 10.1128/JB.01783-08. Epub 2009 Mar 6.


Structural mechanism of signal transduction between the RNA-binding domain and the phosphotransferase system regulation domain of the LicT antiterminator.

Déméné H, Ducat T, De Guillen K, Birck C, Aymerich S, Kochoyan M, Declerck N.

J Biol Chem. 2008 Nov 7;283(45):30838-49. doi: 10.1074/jbc.M805955200. Epub 2008 Aug 5.


Characterization of the control catabolite protein of gluconeogenic genes repressor by fluorescence cross-correlation spectroscopy and other biophysical approaches.

Zorrilla S, Ortega A, Chaix D, Alfonso C, Rivas G, Aymerich S, Lillo MP, Declerck N, Royer CA.

Biophys J. 2008 Nov 1;95(9):4403-15. doi: 10.1529/biophysj.108.135863. Epub 2008 Jul 25. Erratum in: Biophys J. 2009 Feb;96(3):1232.


CcpN controls central carbon fluxes in Bacillus subtilis.

Tännler S, Fischer E, Le Coq D, Doan T, Jamet E, Sauer U, Aymerich S.

J Bacteriol. 2008 Sep;190(18):6178-87. doi: 10.1128/JB.00552-08. Epub 2008 Jun 27.


Screening of Bacillus subtilis transposon mutants with altered riboflavin production.

Tännler S, Zamboni N, Kiraly C, Aymerich S, Sauer U.

Metab Eng. 2008 Sep;10(5):216-26. doi: 10.1016/j.ymben.2008.06.002. Epub 2008 Jun 5.


Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis.

Goelzer A, Bekkal Brikci F, Martin-Verstraete I, Noirot P, Bessières P, Aymerich S, Fromion V.

BMC Syst Biol. 2008 Feb 26;2:20. doi: 10.1186/1752-0509-2-20.


A phospho-sugar binding domain homologous to NagB enzymes regulates the activity of the central glycolytic genes repressor.

Doan T, Martin L, Zorrilla S, Chaix D, Aymerich S, Labesse G, Declerck N.

Proteins. 2008 Jun;71(4):2038-50. doi: 10.1002/prot.21883.


Fructose-1,6-bisphosphate acts both as an inducer and as a structural cofactor of the central glycolytic genes repressor (CggR).

Zorrilla S, Chaix D, Ortega A, Alfonso C, Doan T, Margeat E, Rivas G, Aymerich S, Declerck N, Royer CA.

Biochemistry. 2007 Dec 25;46(51):14996-5008. Epub 2007 Dec 4.


Growth-related variations in the Bacillus cereus secretome.

Gilois N, Ramarao N, Bouillaut L, Perchat S, Aymerich S, Nielsen-Leroux C, Lereclus D, Gohar M.

Proteomics. 2007 May;7(10):1719-28.


Inducer-modulated cooperative binding of the tetrameric CggR repressor to operator DNA.

Zorrilla S, Doan T, Alfonso C, Margeat E, Ortega A, Rivas G, Aymerich S, Royer CA, Declerck N.

Biophys J. 2007 May 1;92(9):3215-27. Epub 2007 Feb 9.


YtsJ has the major physiological role of the four paralogous malic enzyme isoforms in Bacillus subtilis.

Lerondel G, Doan T, Zamboni N, Sauer U, Aymerich S.

J Bacteriol. 2006 Jul;188(13):4727-36.


Crystal structure of Bacillus subtilis TrmB, the tRNA (m7G46) methyltransferase.

Zegers I, Gigot D, van Vliet F, Tricot C, Aymerich S, Bujnicki JM, Kosinski J, Droogmans L.

Nucleic Acids Res. 2006 Apr 5;34(6):1925-34. Print 2006.


Autoinducer 2 affects biofilm formation by Bacillus cereus.

Auger S, Krin E, Aymerich S, Gohar M.

Appl Environ Microbiol. 2006 Jan;72(1):937-41.


The Bacillus subtilis yqjI gene encodes the NADP+-dependent 6-P-gluconate dehydrogenase in the pentose phosphate pathway.

Zamboni N, Fischer E, Laudert D, Aymerich S, Hohmann HP, Sauer U.

J Bacteriol. 2004 Jul;186(14):4528-34.


The Bacillus subtilis ywkA gene encodes a malic enzyme and its transcription is activated by the YufL/YufM two-component system in response to malate.

Doan T, Servant P, Tojo S, Yamaguchi H, Lerondel G, Yoshida K, Fujita Y, Aymerich S.

Microbiology. 2003 Sep;149(Pt 9):2331-43.


Essential Bacillus subtilis genes.

Kobayashi K, Ehrlich SD, Albertini A, Amati G, Andersen KK, Arnaud M, Asai K, Ashikaga S, Aymerich S, Bessieres P, Boland F, Brignell SC, Bron S, Bunai K, Chapuis J, Christiansen LC, Danchin A, Débarbouille M, Dervyn E, Deuerling E, Devine K, Devine SK, Dreesen O, Errington J, Fillinger S, Foster SJ, Fujita Y, Galizzi A, Gardan R, Eschevins C, Fukushima T, Haga K, Harwood CR, Hecker M, Hosoya D, Hullo MF, Kakeshita H, Karamata D, Kasahara Y, Kawamura F, Koga K, Koski P, Kuwana R, Imamura D, Ishimaru M, Ishikawa S, Ishio I, Le Coq D, Masson A, Mauël C, Meima R, Mellado RP, Moir A, Moriya S, Nagakawa E, Nanamiya H, Nakai S, Nygaard P, Ogura M, Ohanan T, O'Reilly M, O'Rourke M, Pragai Z, Pooley HM, Rapoport G, Rawlins JP, Rivas LA, Rivolta C, Sadaie A, Sadaie Y, Sarvas M, Sato T, Saxild HH, Scanlan E, Schumann W, Seegers JF, Sekiguchi J, Sekowska A, Séror SJ, Simon M, Stragier P, Studer R, Takamatsu H, Tanaka T, Takeuchi M, Thomaides HB, Vagner V, van Dijl JM, Watabe K, Wipat A, Yamamoto H, Yamamoto M, Yamamoto Y, Yamane K, Yata K, Yoshida K, Yoshikawa H, Zuber U, Ogasawara N.

Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4678-83. Epub 2003 Apr 7.


RNA recognition by transcriptional antiterminators of the BglG/SacY family: mapping of SacY RNA binding site.

Declerck N, Minh NL, Yang Y, Bloch V, Kochoyan M, Aymerich S.

J Mol Biol. 2002 Jun 21;319(5):1035-48.


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