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[Continuous erector spinae plane block for postoperative analgesia of multiple rib fracture surgery: case report].

Yayik AM, Ahiskalioglu A, Çelik EC, Ay A, Ozenoglu A.

Rev Bras Anestesiol. 2018 Nov 1. pii: S0034-7094(18)30284-8. doi: 10.1016/j.bjan.2018.08.001. [Epub ahead of print] Portuguese.


Construction of Signaling Pathways with RNAi Data and Multiple Reference Networks.

Alim MA, Ay A, Hasan MM, Thai MT, Kahveci T.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Jul-Aug;15(4):1079-1091. doi: 10.1109/TCBB.2017.2710129.


The Use of Complementary and Alternative Medicines Among Surgical Patients: A Survey Study.

Yazici G, Erdogan Z, Bulut H, Ay A, Kalkan N, Atasayar S, Erden Yuksekkaya S.

J Perianesth Nurs. 2018 Jul 19. pii: S1089-9472(18)30114-X. doi: 10.1016/j.jopan.2018.04.007. [Epub ahead of print]


Noise in the Vertebrate Segmentation Clock Is Boosted by Time Delays but Tamed by Notch Signaling.

Keskin S, Devakanmalai GS, Kwon SB, Vu HT, Hong Q, Lee YY, Soltani M, Singh A, Ay A, Özbudak EM.

Cell Rep. 2018 May 15;23(7):2175-2185.e4. doi: 10.1016/j.celrep.2018.04.069.


Cross-cultural adaptation, validity, and reliability of the Turkish version of revised American Pain Society patient outcome questionnaire for surgical patients.

Erden S, Karadağ M, Güler Demir S, Atasayar S, Opak Yücel B, Kalkan N, Erdoğan Z, Ay A.

Agri. 2018 Apr;30(2):39-50. doi: 10.5505/agri.2018.21548.


Modeling Strengthens Molecular Link between Circadian Polymorphisms and Major Mood Disorders.

Liberman AR, Halitjaha L, Ay A, Ingram KK.

J Biol Rhythms. 2018 Jun;33(3):318-336. doi: 10.1177/0748730418764540. Epub 2018 Apr 3.


Ultrasound-guided erector spinae plane block provides effective perioperative analgesia and anaesthesia for thoracic mass excision: A report of two cases.

Cesur S, Ay AN, Yayık AM, Naldan ME, Gürkan Y.

Anaesth Crit Care Pain Med. 2018 Feb 13. pii: S2352-5568(17)30372-7. doi: 10.1016/j.accpm.2018.01.002. [Epub ahead of print] No abstract available.


Comparison of Lidocaine and Atropine on Fentanyl-Induced Cough: A Randomized Controlled Study.

Naldan ME, Arslan Z, Ay A, Yayık AM.

J Invest Surg. 2018 Feb 1:1-5. doi: 10.1080/08941939.2018.1424272. [Epub ahead of print]


School-age children's perception of the hospital experience.

Boztepe H, Çınar S, Ay A.

J Child Health Care. 2017 Jun;21(2):162-170. doi: 10.1177/1367493517690454. Epub 2017 Feb 1.


Circadian Clock Model Supports Molecular Link Between PER3 and Human Anxiety.

Liberman AR, Kwon SB, Vu HT, Filipowicz A, Ay A, Ingram KK.

Sci Rep. 2017 Aug 31;7(1):9893. doi: 10.1038/s41598-017-07957-4.


Carborane-layered double hydroxide nanohybrids for potential targeted- and magnetically targeted-BNCT applications.

Ay AN, Akar H, Zaulet A, Viňas C, Teixidor F, Zumreoglu-Karan B.

Dalton Trans. 2017 Mar 7;46(10):3303-3310. doi: 10.1039/c7dt00100b.


Does the visibility of a congenital anomaly affect maternal-infant attachment levels?

Boztepe H, Ay A, Kerimoğlu Yıldız G, Çınar S.

J Spec Pediatr Nurs. 2016 Oct;21(4):200-211. doi: 10.1111/jspn.12157.


Differential transcriptional regulation by alternatively designed mechanisms: A mathematical modeling approach.

Yildirim N, Aktas ME, Ozcan SN, Akbas E, Ay A.

In Silico Biol. 2017;12(3-4):95-127. doi: 10.3233/ISB-160467.


Identifying the topology of signaling networks from partial RNAi data.

Ren Y, Wang Q, Hasan MM, Ay A, Kahveci T.

BMC Syst Biol. 2016 Aug 1;10 Suppl 2:53. doi: 10.1186/s12918-016-0301-4.


The Effect of Cold Vapor Applied for Sore Throat in the Early Postoperative Period.

Bulut H, Erden S, Demir SG, Çakar B, Erdoğan Z, Demir N, Ay A, Aydın E.

J Perianesth Nurs. 2016 Aug;31(4):291-7. doi: 10.1016/j.jopan.2014.10.005. Epub 2016 Feb 24.


Molecular insights into chronotype and time-of-day effects on decision-making.

Ingram KK, Ay A, Kwon SB, Woods K, Escobar S, Gordon M, Smith IH, Bearden N, Filipowicz A, Jain K.

Sci Rep. 2016 Jul 8;6:29392. doi: 10.1038/srep29392.


Functional cooperation between KCa3.1 and TRPC1 channels in human breast cancer: Role in cell proliferation and patient prognosis.

Faouzi M, Hague F, Geerts D, Ay AS, Potier-Cartereau M, Ahidouch A, Ouadid-Ahidouch H.

Oncotarget. 2016 Jun 14;7(24):36419-36435. doi: 10.18632/oncotarget.9261.


Microarray Analysis of Gene Expression in Saccharomyces cerevisiae kap108Δ Mutants upon Addition of Oxidative Stress.

Belanger KD, Larson N, Kahn J, Tkachev D, Ay A.

G3 (Bethesda). 2016 Apr 7;6(4):1131-9. doi: 10.1534/g3.116.027011.


Evaluation of oxidant/anti-oxidants status in patients with mild acute -pancreatitis.

Baser H, Can U, Karasoy D, Ay AS, Baser S, Yerlikaya FH, Ecirli S.

Acta Gastroenterol Belg. 2016 Mar;79(1):23-8.


Genome-wide errant targeting by Hairy.

Kok K, Ay A, Li LM, Arnosti DN.

Elife. 2015 Aug 25;4. doi: 10.7554/eLife.06394.


5-Fluorouracil intercalated iron oxide@layered double hydroxide core-shell nano-composites with isotropic and anisotropic architectures for shape-selective drug delivery applications.

Tuncelli G, Ay AN, Zümreoglu-Karan B.

Mater Sci Eng C Mater Biol Appl. 2015 Oct;55:562-8. doi: 10.1016/j.msec.2015.06.001. Epub 2015 Jun 15.


Hierarchical decomposition of dynamically evolving regulatory networks.

Ay A, Gong D, Kahveci T.

BMC Bioinformatics. 2015 May 15;16:161. doi: 10.1186/s12859-015-0529-9.


Mathematical modeling deciphers the benefits of alternatively-designed conserved activatory and inhibitory gene circuits.

Ay A, Wilner N, Yildirim N.

Mol Biosyst. 2015 Jul;11(7):2017-30. doi: 10.1039/c5mb00269a.


Epigenetic dysregulation of KCa 3.1 channels induces poor prognosis in lung cancer.

Bulk E, Ay AS, Hammadi M, Ouadid-Ahidouch H, Schelhaas S, Hascher A, Rohde C, Thoennissen NH, Wiewrodt R, Schmidt E, Marra A, Hillejan L, Jacobs AH, Klein HU, Dugas M, Berdel WE, Müller-Tidow C, Schwab A.

Int J Cancer. 2015 Sep 15;137(6):1306-17. doi: 10.1002/ijc.29490. Epub 2015 May 29.


Diurnal Preference Predicts Phase Differences in Expression of Human Peripheral Circadian Clock Genes.

Ferrante A, Gellerman D, Ay A, Woods KP, Filipowicz AM, Jain K, Bearden N, Ingram KK.

J Circadian Rhythms. 2015 Jun 5;13:4. doi: 10.5334/


Risk factors for perioperative anxiety in laparoscopic surgery.

Ay AA, Ulucanlar H, Ay A, Ozden M.

JSLS. 2014 Jul-Sep;18(3). pii: e2014.00159. doi: 10.4293/JSLS.2014.00159.


Network-based Prediction of Cancer under Genetic Storm.

Ay A, Gong D, Kahveci T.

Cancer Inform. 2014 Oct 15;13(Suppl 3):15-31. doi: 10.4137/CIN.S14025. eCollection 2014.


Spatial gradients of protein-level time delays set the pace of the traveling segmentation clock waves.

Ay A, Holland J, Sperlea A, Devakanmalai GS, Knierer S, Sangervasi S, Stevenson A, Ozbudak EM.

Development. 2014 Nov;141(21):4158-67. doi: 10.1242/dev.111930.


Lymphoedema after mastectomy for breast cancer: importance of supportive care.

Ay AA, Kutun S, Cetin A.

S Afr J Surg. 2014 Jun 6;52(2):41-4. doi: 10.7196/sajs.1908.


Dynamics matter: differences and similarities between alternatively designed mechanisms.

Ay A, Yildirim N.

Mol Biosyst. 2014 Jul;10(7):1948-57. doi: 10.1039/c4mb00159a. Epub 2014 May 9.


New insights into pharmacological tools to TR(i)P cancer up.

Gautier M, Dhennin-Duthille I, Ay AS, Rybarczyk P, Korichneva I, Ouadid-Ahidouch H.

Br J Pharmacol. 2014 May;171(10):2582-92. doi: 10.1111/bph.12561. Review.


Orai3 constitutes a native store-operated calcium entry that regulates non small cell lung adenocarcinoma cell proliferation.

Ay AS, Benzerdjeb N, Sevestre H, Ahidouch A, Ouadid-Ahidouch H.

PLoS One. 2013 Sep 13;8(9):e72889. doi: 10.1371/journal.pone.0072889. eCollection 2013. Erratum in: PLoS One. 2015;10(4):e0124201. Benzerdjerb, Nazim [corrected to Benzerdjeb, Nazim].


Short-lived Her proteins drive robust synchronized oscillations in the zebrafish segmentation clock.

Ay A, Knierer S, Sperlea A, Holland J, Özbudak EM.

Development. 2013 Aug;140(15):3244-53. doi: 10.1242/dev.093278.


Effects of glucagon-like peptide-2 on bacterial translocation in rat models of colitis.

Halaçlar B, Ağaç Ay A, Akcan AC, Ay A, Öz B, Arslan E.

Turk J Gastroenterol. 2012;23(6):691-8.


TIF1γ requires sumoylation to exert its repressive activity on TGFβ signaling.

Fattet L, Ay AS, Bonneau B, Jallades L, Mikaelian I, Treilleux I, Gillet G, Hesling C, Rimokh R.

J Cell Sci. 2013 Aug 15;126(Pt 16):3713-23. doi: 10.1242/jcs.126748. Epub 2013 Jun 20.


Global parameter estimation for thermodynamic models of transcriptional regulation.

Suleimenov Y, Ay A, Samee MA, Dresch JM, Sinha S, Arnosti DN.

Methods. 2013 Jul 15;62(1):99-108. doi: 10.1016/j.ymeth.2013.05.012. Epub 2013 May 30.


Idiopathic giant atonic bladder (6000 mL in volume) present for 15 years with no urinary symptoms.

Ay A, Demir A, Kismet K, Emir L, Ertas E.

Can Urol Assoc J. 2013 Jan-Feb;7(1-2):E135-7. doi: 10.5489/cuaj.256.


A primer on thermodynamic-based models for deciphering transcriptional regulatory logic.

Dresch JM, Richards M, Ay A.

Biochim Biophys Acta. 2013 Sep;1829(9):946-53. doi: 10.1016/j.bbagrm.2013.04.011. Epub 2013 May 1. Review.


Effects of melatonin and dexpanthenol on antioxidant parameters when combined with estrogen treatment in ovariectomized rats.

Turgut O, Ay AA, Turgut H, Ay A, Kafkas S, Dost T.

Age (Dordr). 2013 Dec;35(6):2229-35. doi: 10.1007/s11357-013-9519-x. Epub 2013 Mar 8.


Mutation analysis of BRCA1, BRCA2, PALB2 and BRD7 in a hospital-based series of German patients with triple-negative breast cancer.

Pern F, Bogdanova N, Schürmann P, Lin M, Ay A, Länger F, Hillemanns P, Christiansen H, Park-Simon TW, Dörk T.

PLoS One. 2012;7(10):e47993. doi: 10.1371/journal.pone.0047993. Epub 2012 Oct 24.


Boolean modeling of gene regulatory networks: Driesch redux.

Arnosti DN, Ay A.

Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):18239-40. doi: 10.1073/pnas.1215732109. Epub 2012 Oct 1. No abstract available.


The importance of inferior-superior thyroid veins sampling in the diagnosis of thyroid carcinomas.

Kutun S, Ay AA, Celik A, Turan U, Ulucanlar H, Cetin A.

Endokrynol Pol. 2012;63(3):202-5.


Risk factors for postoperative ileus.

Ay AA, Kutun S, Ulucanlar H, Tarcan O, Demir A, Cetin A.

J Korean Surg Soc. 2011 Oct;81(4):242-9. doi: 10.4174/jkss.2011.81.4.242. Epub 2011 Oct 28.


Is transdermal nitroglycerin application effective in preventing and healing flap ischaemia after modified radical mastectomy?

Kutun S, Ay AA, Ulucanlar H, Tarcan O, Ay A, Aldan M, Gorkem G, Demir A, Cetin A.

S Afr J Surg. 2010 Nov;48(4):119-21.


Femoral hernia containing strangulated ileum along with the uterus and both ovaries: a first case report.

Ay A, Agac Ay A, Kaptanoglu B, Ozer S, Akalin C.

Hernia. 2012 Jun;16(3):351-3. doi: 10.1007/s10029-010-0758-9. Epub 2011 Apr 21.


Mathematical modeling of gene expression: a guide for the perplexed biologist.

Ay A, Arnosti DN.

Crit Rev Biochem Mol Biol. 2011 Apr;46(2):137-51. doi: 10.3109/10409238.2011.556597. Review.


Associations of breast cancer risk factors with tumor subtypes: a pooled analysis from the Breast Cancer Association Consortium studies.

Yang XR, Chang-Claude J, Goode EL, Couch FJ, Nevanlinna H, Milne RL, Gaudet M, Schmidt MK, Broeks A, Cox A, Fasching PA, Hein R, Spurdle AB, Blows F, Driver K, Flesch-Janys D, Heinz J, Sinn P, Vrieling A, Heikkinen T, Aittomäki K, Heikkilä P, Blomqvist C, Lissowska J, Peplonska B, Chanock S, Figueroa J, Brinton L, Hall P, Czene K, Humphreys K, Darabi H, Liu J, Van 't Veer LJ, van Leeuwen FE, Andrulis IL, Glendon G, Knight JA, Mulligan AM, O'Malley FP, Weerasooriya N, John EM, Beckmann MW, Hartmann A, Weihbrecht SB, Wachter DL, Jud SM, Loehberg CR, Baglietto L, English DR, Giles GG, McLean CA, Severi G, Lambrechts D, Vandorpe T, Weltens C, Paridaens R, Smeets A, Neven P, Wildiers H, Wang X, Olson JE, Cafourek V, Fredericksen Z, Kosel M, Vachon C, Cramp HE, Connley D, Cross SS, Balasubramanian SP, Reed MW, Dörk T, Bremer M, Meyer A, Karstens JH, Ay A, Park-Simon TW, Hillemanns P, Arias Pérez JI, Menéndez Rodríguez P, Zamora P, Benítez J, Ko YD, Fischer HP, Hamann U, Pesch B, Brüning T, Justenhoven C, Brauch H, Eccles DM, Tapper WJ, Gerty SM, Sawyer EJ, Tomlinson IP, Jones A, Kerin M, Miller N, McInerney N, Anton-Culver H, Ziogas A, Shen CY, Hsiung CN, Wu PE, Yang SL, Yu JC, Chen ST, Hsu GC, Haiman CA, Henderson BE, Le Marchand L, Kolonel LN, Lindblom A, Margolin S, Jakubowska A, Lubiński J, Huzarski T, Byrski T, Górski B, Gronwald J, Hooning MJ, Hollestelle A, van den Ouweland AM, Jager A, Kriege M, Tilanus-Linthorst MM, Collée M, Wang-Gohrke S, Pylkäs K, Jukkola-Vuorinen A, Mononen K, Grip M, Hirvikoski P, Winqvist R, Mannermaa A, Kosma VM, Kauppinen J, Kataja V, Auvinen P, Soini Y, Sironen R, Bojesen SE, Ørsted DD, Kaur-Knudsen D, Flyger H, Nordestgaard BG, Holland H, Chenevix-Trench G, Manoukian S, Barile M, Radice P, Hankinson SE, Hunter DJ, Tamimi R, Sangrajrang S, Brennan P, McKay J, Odefrey F, Gaborieau V, Devilee P, Huijts PE, Tollenaar RA, Seynaeve C, Dite GS, Apicella C, Hopper JL, Hammet F, Tsimiklis H, Smith LD, Southey MC, Humphreys MK, Easton D, Pharoah P, Sherman ME, Garcia-Closas M.

J Natl Cancer Inst. 2011 Feb 2;103(3):250-63. doi: 10.1093/jnci/djq526. Epub 2010 Dec 29.


Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects.

Dresch JM, Liu X, Arnosti DN, Ay A.

BMC Syst Biol. 2010 Oct 24;4:142. doi: 10.1186/1752-0509-4-142.


Nucleosome positioning: an essential component of the enhancer regulatory code?

Ay A, Arnosti DN.

Curr Biol. 2010 May 11;20(9):R404-6. doi: 10.1016/j.cub.2010.03.051.

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