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Defence-related priming and responses to recurring drought: Two manifestations of plant transcriptional memory mediated by the ABA and JA signalling pathways.

Avramova Z.

Plant Cell Environ. 2019 Mar;42(3):983-997. doi: 10.1111/pce.13458. Epub 2018 Nov 29. Review.


Dehydration Stress Memory: Gene Networks Linked to Physiological Responses During Repeated Stresses of Zea mays.

Virlouvet L, Avenson TJ, Du Q, Zhang C, Liu N, Fromm M, Avramova Z, Russo SE.

Front Plant Sci. 2018 Jul 24;9:1058. doi: 10.3389/fpls.2018.01058. eCollection 2018.


Memory responses of jasmonic acid-associated Arabidopsis genes to a repeated dehydration stress.

Liu N, Staswick PE, Avramova Z.

Plant Cell Environ. 2016 Nov;39(11):2515-2529. doi: 10.1111/pce.12806. Epub 2016 Sep 30.


Subcellular localizations of Arabidopsis myotubularins MTM1 and MTM2 suggest possible functions in vesicular trafficking between ER and cis-Golgi.

Nagpal A, Ndamukong I, Hassan A, Avramova Z, Baluška F.

J Plant Physiol. 2016 Aug 1;200:45-52. doi: 10.1016/j.jplph.2016.06.001. Epub 2016 Jun 18.


Corrigendum to "Dynamic and stable histone H3 methylation patterns at the Arabidopsis FLC and AP1 loci" [Gene. 2008 Oct. 15; 423(1):43-47].

Saleh A, Alvarez-Venegas R, Liu N, Avramova Z.

Gene. 2016 Jul 10;585(2):266-7. doi: 10.1016/j.gene.2016.02.043. Epub 2016 Mar 14. No abstract available.


Molecular mechanism of the priming by jasmonic acid of specific dehydration stress response genes in Arabidopsis.

Liu N, Avramova Z.

Epigenetics Chromatin. 2016 Feb 24;9:8. doi: 10.1186/s13072-016-0057-5. eCollection 2016.


The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus.

Saleh A, Al-Abdallat A, Ndamukong I, Alvarez-Venegas R, Avramova Z.

Nucleic Acids Res. 2016 Apr 20;44(7):3475-6. doi: 10.1093/nar/gkv1489. Epub 2015 Dec 15. No abstract available.


Transcriptional 'memory' of a stress: transient chromatin and memory (epigenetic) marks at stress-response genes.

Avramova Z.

Plant J. 2015 Jul;83(1):149-59. doi: 10.1111/tpj.12832. Epub 2015 Apr 15. Review.


Endogenous ABA Extraction and Measurement from Arabidopsis Leaves.

Liu N, Ding Y, Fromm M, Avramova Z.

Bio Protoc. 2014 Oct 5;4(19). pii: e1257.


ATX1/AtCOMPASS and the H3K4me3 marks: how do they activate Arabidopsis genes?

Fromm M, Avramova Z.

Curr Opin Plant Biol. 2014 Oct;21:75-82. doi: 10.1016/j.pbi.2014.07.004. Epub 2014 Jul 19. Review.


Dehydration stress memory genes of Zea mays; comparison with Arabidopsis thaliana.

Ding Y, Virlouvet L, Liu N, Riethoven JJ, Fromm M, Avramova Z.

BMC Plant Biol. 2014 May 22;14:141. doi: 10.1186/1471-2229-14-141.


ABA signaling is necessary but not sufficient for RD29B transcriptional memory during successive dehydration stresses in Arabidopsis thaliana.

Virlouvet L, Ding Y, Fujii H, Avramova Z, Fromm M.

Plant J. 2014 Jul;79(1):150-61. doi: 10.1111/tpj.12548. Epub 2014 Jun 17.


Different gene-specific mechanisms determine the 'revised-response' memory transcription patterns of a subset of A. thaliana dehydration stress responding genes.

Liu N, Ding Y, Fromm M, Avramova Z.

Nucleic Acids Res. 2014 May;42(9):5556-66. doi: 10.1093/nar/gku220. Epub 2014 Apr 17.


H3K27me3 and H3K4me3 chromatin environment at super-induced dehydration stress memory genes of Arabidopsis thaliana.

Liu N, Fromm M, Avramova Z.

Mol Plant. 2014 Mar;7(3):502-13. doi: 10.1093/mp/ssu001. Epub 2014 Jan 30.


Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.

Ding Y, Liu N, Virlouvet L, Riethoven JJ, Fromm M, Avramova Z.

BMC Plant Biol. 2013 Dec 30;13:229. doi: 10.1186/1471-2229-13-229.


ATX1-generated H3K4me3 is required for efficient elongation of transcription, not initiation, at ATX1-regulated genes.

Ding Y, Ndamukong I, Xu Z, Lapko H, Fromm M, Avramova Z.

PLoS Genet. 2012;8(12):e1003111. doi: 10.1371/journal.pgen.1003111. Epub 2012 Dec 20.


Evolution of the PWWP-domain encoding genes in the plant and animal lineages.

Alvarez-Venegas R, Avramova Z.

BMC Evol Biol. 2012 Jun 26;12:101.


Multiple exposures to drought 'train' transcriptional responses in Arabidopsis.

Ding Y, Fromm M, Avramova Z.

Nat Commun. 2012 Mar 13;3:740. doi: 10.1038/ncomms1732.


Divergent functions of the myotubularin (MTM) homologs AtMTM1 and AtMTM2 in Arabidopsis thaliana: evolution of the plant MTM family.

Ding Y, Ndamukong I, Zhao Y, Xia Y, Riethoven JJ, Jones DR, Divecha N, Avramova Z.

Plant J. 2012 Jun;70(5):866-78. doi: 10.1111/j.1365-313X.2012.04936.x. Epub 2012 Mar 30.


Viscoelastic properties of cell walls of single living plant cells determined by dynamic nanoindentation.

Hayot CM, Forouzesh E, Goel A, Avramova Z, Turner JA.

J Exp Bot. 2012 Apr;63(7):2525-40. doi: 10.1093/jxb/err428. Epub 2012 Jan 30.


The Arabidopsis trithorax-like factor ATX1 functions in dehydration stress responses via ABA-dependent and ABA-independent pathways.

Ding Y, Avramova Z, Fromm M.

Plant J. 2011 Jun;66(5):735-44. doi: 10.1111/j.1365-313X.2011.04534.x. Epub 2011 Apr 1.


Two distinct roles of ARABIDOPSIS HOMOLOG OF TRITHORAX1 (ATX1) at promoters and within transcribed regions of ATX1-regulated genes.

Ding Y, Avramova Z, Fromm M.

Plant Cell. 2011 Jan;23(1):350-63. doi: 10.1105/tpc.110.080150. Epub 2011 Jan 25.


A cytoplasm-specific activity encoded by the Trithorax-like ATX1 gene.

Ndamukong I, Lapko H, Cerny RL, Avramova Z.

Nucleic Acids Res. 2011 Jun;39(11):4709-18. doi: 10.1093/nar/gkq1300. Epub 2011 Jan 17.


Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana.

van Dijk K, Ding Y, Malkaram S, Riethoven JJ, Liu R, Yang J, Laczko P, Chen H, Xia Y, Ladunga I, Avramova Z, Fromm M.

BMC Plant Biol. 2010 Nov 5;10:238. doi: 10.1186/1471-2229-10-238.


Phosphatidylinositol 5-phosphate links dehydration stress to the activity of ARABIDOPSIS TRITHORAX-LIKE factor ATX1.

Ndamukong I, Jones DR, Lapko H, Divecha N, Avramova Z.

PLoS One. 2010 Oct 13;5(10):e13396. doi: 10.1371/journal.pone.0013396.


The Arabidopsis chromatin modifier ATX1, the myotubularin-like AtMTM and the response to drought.

Ding Y, Lapko H, Ndamukong I, Xia Y, Al-Abdallat A, Lalithambika S, Sadder M, Saleh A, Fromm M, Riethoven JJ, Lu G, Avramova Z.

Plant Signal Behav. 2009 Nov;4(11):1049-58. Epub 2009 Nov 15.


Evolution and pleiotropy of TRITHORAX function in Arabidopsis.

Avramova Z.

Int J Dev Biol. 2009;53(2-3):371-81. doi: 10.1387/ijdb.082664za. Review.


Wall-modifying genes regulated by the Arabidopsis homolog of trithorax, ATX1: repression of the XTH33 gene as a test case.

Ndamukong I, Chetram A, Saleh A, Avramova Z.

Plant J. 2009 May;58(4):541-53. doi: 10.1111/j.1365-313X.2009.03798.x. Epub 2009 Jan 19.


Dynamic and stable histone H3 methylation patterns at the Arabidopsis FLC and AP1 loci.

Saleh A, Alvarez-Venegas R, Avramova Z.

Gene. 2008 Oct 15;423(1):43-7. doi: 10.1016/j.gene.2008.06.022. Epub 2008 Jun 22. Erratum in: Gene. 2016 Jul 10;585(2):266-7.


Evolution of SET-domain protein families in the unicellular and multicellular Ascomycota fungi.

Veerappan CS, Avramova Z, Moriyama EN.

BMC Evol Biol. 2008 Jul 1;8:190. doi: 10.1186/1471-2148-8-190.


An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plants.

Saleh A, Alvarez-Venegas R, Avramova Z.

Nat Protoc. 2008;3(6):1018-25. doi: 10.1038/nprot.2008.66.


The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions.

Saleh A, Alvarez-Venegas R, Yilmaz M, Le O, Hou G, Sadder M, Al-Abdallat A, Xia Y, Lu G, Ladunga I, Avramova Z.

Plant Cell. 2008 Mar;20(3):568-79. doi: 10.1105/tpc.107.056614. Epub 2008 Mar 28. Erratum in: Plant Cell. 2016 Jan;28(1):265.


ARABIDOPSIS TRITHORAX1 dynamically regulates FLOWERING LOCUS C activation via histone 3 lysine 4 trimethylation.

Pien S, Fleury D, Mylne JS, Crevillen P, Inzé D, Avramova Z, Dean C, Grossniklaus U.

Plant Cell. 2008 Mar;20(3):580-8. doi: 10.1105/tpc.108.058172. Epub 2008 Mar 28.


Epigenetic control of a transcription factor at the cross section of two antagonistic pathways.

Alvarez-Venegas R, Abdallat AA, Guo M, Alfano JR, Avramova Z.

Epigenetics. 2007 Apr-Jun;2(2):106-13. Epub 2007 May 8.


The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus.

Saleh A, Al-Abdallat A, Ndamukong I, Alvarez-Venegas R, Avramova Z.

Nucleic Acids Res. 2007;35(18):6290-6. Epub 2007 Sep 18. Erratum in: Nucleic Acids Res. 2016 Apr 20;44(7):3475-6.


Origin of the bacterial SET domain genes: vertical or horizontal?

Alvarez-Venegas R, Sadder M, Tikhonov A, Avramova Z.

Mol Biol Evol. 2007 Feb;24(2):482-97. Epub 2006 Dec 5.


The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes.

Alvarez-Venegas R, Sadder M, Hlavacka A, Baluska F, Xia Y, Lu G, Firsov A, Sarath G, Moriyama H, Dubrovsky JG, Avramova Z.

Proc Natl Acad Sci U S A. 2006 Apr 11;103(15):6049-54. Epub 2006 Apr 3.


ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes.

Alvarez-Venegas R, Pien S, Sadder M, Witmer X, Grossniklaus U, Avramova Z.

Curr Biol. 2003 Apr 15;13(8):627-37.


Putative subunits of the maize origin of replication recognition complex ZmORC1-ZmORC5.

Witmer X, Alvarez-Venegas R, San-Miguel P, Danilevskaya O, Avramova Z.

Nucleic Acids Res. 2003 Jan 15;31(2):619-28.


SET-domain proteins of the Su(var)3-9, E(z) and trithorax families.

Alvarez-Venegas R, Avramova Z.

Gene. 2002 Feb 20;285(1-2):25-37. Review.


Heterochromatin in animals and plants. Similarities and differences.

Avramova ZV.

Plant Physiol. 2002 May;129(1):40-9. Review. No abstract available.


Target sites for SINE integration in Brassica genomes display nuclear matrix binding activity.

Tikhonov AP, Lavie L, Tatout C, Bennetzen JL, Avramova Z, Deragon JM.

Chromosome Res. 2001;9(4):325-37.


Colinearity and its exceptions in orthologous adh regions of maize and sorghum.

Tikhonov AP, SanMiguel PJ, Nakajima Y, Gorenstein NM, Bennetzen JL, Avramova Z.

Proc Natl Acad Sci U S A. 1999 Jun 22;96(13):7409-14.


Are scs and scs' 'neutral' chromatin domain boundaries of the locus?

Avramova Z, Tikhonov A.

Trends Genet. 1999 Apr;15(4):138-9. No abstract available.


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