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Isolation and characterization of new human carrier peptides from two important vaccine immunogens.

Wantuch PL, Sun L, LoPilato RK, Mousa JJ, Haltiwanger RS, Avci FY.

Vaccine. 2020 Feb 28;38(10):2315-2325. doi: 10.1016/j.vaccine.2020.01.065. Epub 2020 Jan 28.


Host protein glycosylation in nucleic acid vaccines as a potential hurdle in vaccine design for nonviral pathogens.

Ozdilek A, Paschall AV, Dookwah M, Tiemeyer M, Avci FY.

Proc Natl Acad Sci U S A. 2020 Jan 21;117(3):1280-1282. doi: 10.1073/pnas.1916131117. Epub 2020 Jan 6.


Repurposing bioactive aporphine alkaloids as efflux pump inhibitors.

Avci FG, Atas B, Aksoy CS, Kurpejovic E, Gulsoy Toplan G, Gurer C, Guillerminet M, Orelle C, Jault JM, Sariyar Akbulut B.

Fitoterapia. 2019 Nov;139:104371. doi: 10.1016/j.fitote.2019.104371. Epub 2019 Oct 16.


Glycoconjugates: What It Would Take To Master These Well-Known yet Little-Understood Immunogens for Vaccine Development.

Avci F, Berti F, Dull P, Hennessey J, Pavliak V, Prasad AK, Vann W, Wacker M, Marcq O.

mSphere. 2019 Sep 25;4(5). pii: e00520-19. doi: 10.1128/mSphere.00520-19.


NaCl Nanoparticles as a Cancer Therapeutic.

Jiang W, Yin L, Chen H, Paschall AV, Zhang L, Fu W, Zhang W, Todd T, Yu KS, Zhou S, Zhen Z, Butler M, Yao L, Zhang F, Shen Y, Li Z, Yin A, Yin H, Wang X, Avci FY, Yu X, Xie J.

Adv Mater. 2019 Nov;31(46):e1904058. doi: 10.1002/adma.201904058. Epub 2019 Sep 25.


Opsonophagocytic Killing Assay to Assess Immunological Responses Against Bacterial Pathogens.

Paschall AV, Middleton DR, Avci FY.

J Vis Exp. 2019 Apr 5;(146). doi: 10.3791/59400.


Glycoconjugate synthesis using chemoselective ligation.

Cheng S, Wantuch PL, Kizer ME, Middleton DR, Wang R, DiBello M, Li M, Wang X, Li X, Ramachandiran V, Avci FY, Zhang F, Zhang X, Linhardt RJ.

Org Biomol Chem. 2019 Mar 6;17(10):2646-2650. doi: 10.1039/c9ob00270g.


Invasive pneumococcal disease in relation to vaccine type serotypes.

Wantuch PL, Avci FY.

Hum Vaccin Immunother. 2019;15(4):874-875. doi: 10.1080/21645515.2018.1564444. Epub 2019 Feb 20.


What Are the Multi-Omics Mechanisms for Adaptation by Microorganisms to High Alkalinity? A Transcriptomic and Proteomic Study of a Bacillus Strain with Industrial Potential.

Altinisik Kaya FE, Avci FG, Sayar NA, Kazan D, Sayar AA, Sariyar Akbulut B.

OMICS. 2018 Nov;22(11):717-732. doi: 10.1089/omi.2018.0127.


Ultrasonographic evaluation of jaw elevator muscles in young adults with bruxism and with and without attrition-type tooth wear: A pilot study.

Goller Bulut D, Avci F, Özcan G.

Cranio. 2018 Aug 28:1-8. doi: 10.1080/08869634.2018.1505453. [Epub ahead of print]


Membrane Active Peptides and Their Biophysical Characterization.

Avci FG, Akbulut BS, Ozkirimli E.

Biomolecules. 2018 Aug 22;8(3). pii: E77. doi: 10.3390/biom8030077. Review.


Metabolic labeling of HIV-1 envelope glycoprotein gp120 to elucidate the effect of gp120 glycosylation on antigen uptake.

Sun L, Ishihara M, Middleton DR, Tiemeyer M, Avci FY.

J Biol Chem. 2018 Sep 28;293(39):15178-15194. doi: 10.1074/jbc.RA118.004798. Epub 2018 Aug 16.


Targeting a hidden site on class A beta-lactamases.

Avci FG, Altinisik FE, Karacan I, Senturk Karagoz D, Ersahin S, Eren A, Sayar NA, Vardar Ulu D, Ozkirimli E, Sariyar Akbulut B.

J Mol Graph Model. 2018 Sep;84:125-133. doi: 10.1016/j.jmgm.2018.06.007. Epub 2018 Jun 18.


Enzymatic Hydrolysis of Pneumococcal Capsular Polysaccharide Renders the Bacterium Vulnerable to Host Defense.

Middleton DR, Paschall AV, Duke JA, Avci FY.

Infect Immun. 2018 Jul 23;86(8). pii: e00316-18. doi: 10.1128/IAI.00316-18. Print 2018 Aug.


Current status and future directions of invasive pneumococcal diseases and prophylactic approaches to control them.

Wantuch PL, Avci FY.

Hum Vaccin Immunother. 2018;14(9):2303-2309. doi: 10.1080/21645515.2018.1470726. Epub 2018 Jun 18. Review.


Changes in dimension of neurovascular canals in the mandible and maxilla: A radiographic finding in patients diagnosed with MRONJ.

Goller-Bulut D, Özcan G, Avci F.

Med Oral Patol Oral Cir Bucal. 2018 May 1;23(3):e282-e289. doi: 10.4317/medoral.22274.


An OMIC approach to elaborate the antibacterial mechanisms of different alkaloids.

Avci FG, Sayar NA, Sariyar Akbulut B.

Phytochemistry. 2018 May;149:123-131. doi: 10.1016/j.phytochem.2017.12.023. Epub 2018 Feb 27.


Identification and characterization of the Streptococcus pneumoniae type 3 capsule-specific glycoside hydrolase of Paenibacillus species 32352.

Middleton DR, Zhang X, Wantuch PL, Ozdilek A, Liu X, LoPilato R, Gangasani N, Bridger R, Wells L, Linhardt RJ, Avci FY.

Glycobiology. 2018 Feb 1;28(2):90-99. doi: 10.1093/glycob/cwx097.


T Cell-Mediated Humoral Immune Responses to Type 3 Capsular Polysaccharide of Streptococcus pneumoniae.

Middleton DR, Sun L, Paschall AV, Avci FY.

J Immunol. 2017 Jul 15;199(2):598-603. doi: 10.4049/jimmunol.1700026. Epub 2017 May 31.


Complete Genome Sequence of the Bacterium Bacillus circulans Jordan Strain 32352.

Middleton DR, Lorenz W, Avci FY.

Genome Announc. 2017 May 11;5(19). pii: e00289-17. doi: 10.1128/genomeA.00289-17.


The relationship between the helicobacter pylori seropositivity with systemic and local oxidative status and hyperemesis gravidarum: a pilot study.

Göymen A, Özdurak İ, Özkaplan ŞE, Şimsek Y, Avcı F, Akpak YK.

J Matern Fetal Neonatal Med. 2018 May;31(9):1204-1208. doi: 10.1080/14767058.2017.1312328. Epub 2017 Apr 12.


Rapid screening of sugar-nucleotide donor specificities of putative glycosyltransferases.

Sheikh MO, Halmo SM, Patel S, Middleton D, Takeuchi H, Schafer CM, West CM, Haltiwanger RS, Avci FY, Moremen KW, Wells L.

Glycobiology. 2017 Mar 1;27(3):206-212. doi: 10.1093/glycob/cww114.


A chicken vaccine to protect humans from diarrheal disease.

Avci FY.

Glycobiology. 2016 Nov;26(11):1137-1139. doi: 10.1093/glycob/cww097. No abstract available.


Transcriptomic analysis displays the effect of (-)-roemerine on the motility and nutrient uptake in Escherichia coli.

Ayyildiz D, Arga KY, Avci FG, Altinisik FE, Gurer C, Gulsoy Toplan G, Kazan D, Wozny K, Brügger B, Mertoglu B, Sariyar Akbulut B.

Curr Genet. 2017 Aug;63(4):709-722. doi: 10.1007/s00294-016-0673-4. Epub 2016 Dec 24.


Response of Escherichia coli to Prolonged Berberine Exposure.

Budeyri Gokgoz N, Avci FG, Yoneten KK, Alaybeyoglu B, Ozkirimli E, Sayar NA, Kazan D, Sariyar Akbulut B.

Microb Drug Resist. 2017 Jul;23(5):531-544. doi: 10.1089/mdr.2016.0063. Epub 2016 Nov 17.


Serum collagenase-2 and BMI levels in pregnant women with striae gravidarum.

Ozturk P, Kıran H, Kurutas EB, Mulayim K, Avcı F.

J Cosmet Dermatol. 2017 Sep;16(3):416-420. doi: 10.1111/jocd.12269. Epub 2016 Sep 7.


An evolutionarily conserved allosteric site modulates beta-lactamase activity.

Avci FG, Altinisik FE, Vardar Ulu D, Ozkirimli Olmez E, Sariyar Akbulut B.

J Enzyme Inhib Med Chem. 2016;31(sup3):33-40. Epub 2016 Jun 28.


Carbohydrates as T-cell antigens with implications in health and disease.

Sun L, Middleton DR, Wantuch PL, Ozdilek A, Avci FY.

Glycobiology. 2016 Oct;26(10):1029-1040. doi: 10.1093/glycob/cww062. Epub 2016 May 28. Review.


Role of cone-beam computed tomography in the evaluation of a paradental cyst related to the fusion of a wisdom tooth with a paramolar: A rare case report.

Ozcan G, Sekerci AE, Soylu E, Nazlim S, Amuk M, Avci F.

Imaging Sci Dent. 2016 Mar;46(1):57-62. doi: 10.5624/isd.2016.46.1.57. Epub 2016 Mar 24.


Is neutrophil/lymphocyte ratio a useful marker to predict the severity of pre-eclampsia?

Serin S, Avcı F, Ercan O, Köstü B, Bakacak M, Kıran H.

Pregnancy Hypertens. 2016 Jan;6(1):22-5. doi: 10.1016/j.preghy.2016.01.005. Epub 2016 Feb 4.


The effect of Ramadan fasting on fetal development.

Karateke A, Kaplanoglu M, Avci F, Kurt RK, Baloglu A.

Pak J Med Sci. 2015 Nov-Dec;31(6):1295-9. doi: 10.12669/pjms.316.8562.


High yield 1,3-propanediol production by rational engineering of the 3-hydroxypropionaldehyde bottleneck in Citrobacter werkmanii.

Maervoet VE, De Maeseneire SL, Avci FG, Beauprez J, Soetaert WK, De Mey M.

Microb Cell Fact. 2016 Jan 28;15:23. doi: 10.1186/s12934-016-0421-y.


Comparison of Vitamin D levels in cases with preeclampsia, eclampsia and healthy pregnant women.

Bakacak M, Serin S, Ercan O, Köstü B, Avci F, Kılınç M, Kıran H, Kiran G.

Int J Clin Exp Med. 2015 Sep 15;8(9):16280-6. eCollection 2015.


Comparison of postoperative vaginal length and sexual function after abdominal, vaginal, and laparoscopic hysterectomy.

Ercan Ö, Özer A, Köstü B, Bakacak M, Kıran G, Avcı F.

Int J Gynaecol Obstet. 2016 Jan;132(1):39-41. doi: 10.1016/j.ijgo.2015.07.006. Epub 2015 Oct 9.


Comparison of solifenacin and fesoterodine in treatment of overactive bladder.

Ercan Ö, Köstü B, Bakacak M, Aytaç-Tohma Y, Çoşkun B, Avcı F, Efe E.

Saudi Med J. 2015 Oct;36(10):1181-5. doi: 10.15537/smj.2015.10.12016.


Serum human epididymis protein 4 can be a useful tumor marker in the differential diagnosis of adnexal masses during pregnancy: a pilot study.

Gucer F, Kiran G, Canaz E, Kilinc M, Ekerbicer HC, Avci F, Kiran H, Coskun A, Arikan DC.

Eur J Gynaecol Oncol. 2015;36(4):406-9.


Changes in Copper, Zinc, and Malondialdehyde Levels and Superoxide Dismutase Activities in Pre-Eclamptic Pregnancies.

Bakacak M, Kılınç M, Serin S, Ercan Ö, Köstü B, Avcı F, Kıran H, Kıran G.

Med Sci Monit. 2015 Aug 17;21:2414-20. doi: 10.12659/MSM.895002.


A comparison of two techniques of uterine closure in caesarean section.

Köstü B, Ercan Ö, Özer A, Bakacak M, Özdemir Ö, Avcı F.

J Matern Fetal Neonatal Med. 2016;29(10):1573-6. doi: 10.3109/14767058.2015.1054276. Epub 2015 Jun 23.


The evaluation of Nesfatin-1 levels in patients with and without intrauterine growth restriction.

Serin S, Bakacak M, Ercan Ö, Köstü B, Avci F, Arıkan D, Kıran G.

J Matern Fetal Neonatal Med. 2016;29(9):1409-13. doi: 10.3109/14767058.2015.1049524. Epub 2015 Jun 4.


Profiling pneumococcal type 3-derived oligosaccharides by high resolution liquid chromatography-tandem mass spectrometry.

Li G, Li L, Xue C, Middleton D, Linhardt RJ, Avci FY.

J Chromatogr A. 2015 Jun 5;1397:43-51. doi: 10.1016/j.chroma.2015.04.009. Epub 2015 Apr 11.


Factors affecting general sleep pattern and quality of sleep in pregnant women.

Ölmez S, Keten HS, Kardaş S, Avcı F, Dalgacı AF, Serin S, Kardaş F.

Turk J Obstet Gynecol. 2015 Mar;12(1):1-5. doi: 10.4274/tjod.22120. Epub 2015 Mar 15.


The effect of maternal hemoglobin concentration on fetal birth weight according to trimesters.

Bakacak M, Avci F, Ercan O, Köstü B, Serin S, Kiran G, Bostanci MS, Bakacak Z.

J Matern Fetal Neonatal Med. 2015;28(17):2106-10. doi: 10.3109/14767058.2014.979149. Epub 2014 Nov 11.


Management of hematometrocolpos due to dysfunctional uterine bleeding following progestin use: a case report.

Bakacak M, Avci F, Bostanci MS, Bakacak Z, Serin S, Ercan O, Kostu B.

North Clin Istanb. 2014 Aug 3;1(1):45-48. doi: 10.14744/nci.2014.32932. eCollection 2014.


The effect of autoimmunity on the development time of microvascular complications in patients with type 1 diabetes mellitus.

Arslan D, Merdin A, Tural D, Temizel M, Akın O, Gündüz S, Tatlı AM, Avcı F, Uysal M.

Med Sci Monit. 2014 Jul 10;20:1176-9. doi: 10.12659/MSM.890742.


Pilomatrix carcinoma of the scalp with pulmonary metastasis: A case report of a complete response to oral endoxan and etoposide.

Arslan D, Gündüz S, Avci F, Merdin A, Tatli AM, Uysal M, Tural D, Başsorgun CI, Savaş B.

Oncol Lett. 2014 Jun;7(6):1959-1961. Epub 2014 Apr 1.


1,3-propanediol production with Citrobacter werkmanii DSM17579: effect of a dhaD knock-out.

Maervoet VE, De Maeseneire SL, Avci FG, Beauprez J, Soetaert WK, De Mey M.

Microb Cell Fact. 2014 May 17;13:70. doi: 10.1186/1475-2859-13-70.


Glucose-6-phosphate dehydrogenase deficiency presented with convulsion: a rare case.

Merdin A, Avci F, Guzelay N.

Hematol Rep. 2014 Mar 26;6(1):5266. doi: 10.4081/hr.2014.5266. eCollection 2014 Jan 29.


Management of a patient with colon cancer and rotor syndrome: A case report.

Arslan D, Avci F, Merdin A, Gunduz S, Coskun HS.

Oncol Lett. 2014 Mar;7(3):797-798. Epub 2013 Dec 19.


Sphingolipids from a symbiotic microbe regulate homeostasis of host intestinal natural killer T cells.

An D, Oh SF, Olszak T, Neves JF, Avci FY, Erturk-Hasdemir D, Lu X, Zeissig S, Blumberg RS, Kasper DL.

Cell. 2014 Jan 16;156(1-2):123-33. doi: 10.1016/j.cell.2013.11.042.


Novel strategies for development of next-generation glycoconjugate vaccines.

Avci FY.

Curr Top Med Chem. 2013;13(20):2535-40. Review.


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