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Items: 27

1.

Cyprinid herpesvirus 3 Evolves In Vitro through an Assemblage of Haplotypes that Alternatively Become Dominant or Under-Represented.

Klafack S, Fiston-Lavier AS, Bergmann SM, Hammoumi S, Schröder L, Fuchs W, Lusiastuti A, Lee PY, Heredia SV; Master student consortium, Gosselin-Grenet AS, Avarre JC.

Viruses. 2019 Aug 15;11(8). pii: E754. doi: 10.3390/v11080754.

2.

Resting Cyst Distribution and Molecular Identification of the Harmful Dinoflagellate Margalefidinium polykrikoides (Gymnodiniales, Dinophyceae) in Lampung Bay, Sumatra, Indonesia.

Thoha H, Muawanah, Bayu Intan MD, Rachman A, Sianturi OR, Sidabutar T, Iwataki M, Takahashi K, Avarre JC, Masseret E.

Front Microbiol. 2019 Feb 21;10:306. doi: 10.3389/fmicb.2019.00306. eCollection 2019.

3.

Editorial: Molecular Tracing of Aquatic Viruses: Where Epidemiology Needs to Meet Genomics.

Avarre JC.

Front Microbiol. 2017 Aug 8;8:1498. doi: 10.3389/fmicb.2017.01498. eCollection 2017. No abstract available.

4.

Contribution of Next-Generation Sequencing to Aquatic and Fish Virology.

Nkili-Meyong AA, Bigarré L, Labouba I, Vallaeys T, Avarre JC, Berthet N.

Intervirology. 2016;59(5-6):285-300. doi: 10.1159/000477808. Epub 2017 Jul 1.

5.

Targeted genomic enrichment and sequencing of CyHV-3 from carp tissues confirms low nucleotide diversity and mixed genotype infections.

Hammoumi S, Vallaeys T, Santika A, Leleux P, Borzym E, Klopp C, Avarre JC.

PeerJ. 2016 Sep 27;4:e2516. eCollection 2016.

6.

A European epidemiological survey of Vibrio splendidus clade shows unexplored diversity and massive exchange of virulence factors.

Nasfi H, Travers MA, de Lorgeril J, Habib C, Sannie T, Sorieul L, Gerard J, Avarre JC, Haffner P, Tourbiez D, Renault T, Furones D, Roque A, Pruzzo C, Cheslett D, Gdoura R, Vallaeys T.

World J Microbiol Biotechnol. 2015 Mar;31(3):461-75. doi: 10.1007/s11274-015-1800-y. Epub 2015 Jan 14.

PMID:
25586509
7.

Plasticity of gene expression according to salinity in the testis of broodstock and F1 black-chinned tilapia, Sarotherodon melanotheron heudelotii.

Avarre JC, Guinand B, Dugué R, Cosson J, Legendre M, Panfili J, Durand JD.

PeerJ. 2014 Dec 18;2:e702. doi: 10.7717/peerj.702. eCollection 2014.

8.

Rapid detection and identification of nontuberculous mycobacterial pathogens in fish by using high-resolution melting analysis.

Phung TN, Caruso D, Godreuil S, Keck N, Vallaeys T, Avarre JC.

Appl Environ Microbiol. 2013 Dec;79(24):7837-45. doi: 10.1128/AEM.00822-13. Epub 2013 Oct 11.

9.

Analysis of the black-chinned tilapia Sarotherodon melanotheron heudelotii reproducing under a wide range of salinities: from RNA-seq to candidate genes.

Avarre JC, Dugué R, Alonso P, Diombokho A, Joffrois C, Faivre N, Cochet C, Durand JD.

Mol Ecol Resour. 2014 Jan;14(1):139-49. doi: 10.1111/1755-0998.12148. Epub 2013 Jul 25.

PMID:
23889972
10.

Permanent genetic resources added to molecular ecology resources database 1 December 2012-31 January 2013.

Molecular Ecology Resources Primer Development Consortium, Arranz SE, Avarre JC, Balasundaram C, Bouza C, Calcaterra NB, Cezilly F, Chen SL, Cipriani G, Cruz VP, D'Esposito D, Daniel C, Dejean A, Dharaneedharan S, Díaz J, Du M, Durand JD, Dziadek J, Foresti F, Peng-cheng F, Gao QB, García G, Gauffre-Autelin P, Giovino A, Goswami M, Guarino C, Guerra-Varela J, Gutiérrez V, Harris DJ, Heo MS, Khan G, Kim M, Lakra WS, Lauth J, Leclercq P, Lee J, Lee SH, Lee S, Lee T, Li YH, Liu H, Liu S, Malé PJ, Mandhan RP, Martinez P, Mayer VE, Mendel J, Mendes NJ, Mendonça FF, Minias A, Minias P, Oh KS, Oliveira C, Orivel J, Orsini L, Pardo BG, Perera A, Procaccini G, Rato C, Ríos N, Scibetta S, Sharma BS, Sierens T, Singh A, Terer T, Triest L, Urbánková S, Vera M, Villanova GV, Voglmayr H, Vyskočilová M, Wang H, Wang JL, Wattier RA, Xing R, Yadav K, Yin G, Yuan Y, Yun JC, Zhang FQ, Zhang JH, Zhuang Z.

Mol Ecol Resour. 2013 May;13(3):546-9. doi: 10.1111/1755-0998.12095. Epub 2013 Mar 25.

PMID:
23521844
11.

Spatio-temporal analysis of cyprinid herpesvirus 3 genetic diversity at a local scale.

Avarre JC, Santika A, Bentenni A, Zainun Z, Madeira JP, Maskur M, Bigarré L, Caruso D.

J Fish Dis. 2012 Oct;35(10):767-74. doi: 10.1111/j.1365-2761.2012.01404.x. Epub 2012 Jul 16.

PMID:
22805046
12.

Osmoregulatory strategies in natural populations of the black-chinned tilapia Sarotherodon melanotheron exposed to extreme salinities in West African estuaries.

Lorin-Nebel C, Avarre JC, Faivre N, Wallon S, Charmantier G, Durand JD.

J Comp Physiol B. 2012 Aug;182(6):771-80. doi: 10.1007/s00360-012-0657-8. Epub 2012 Mar 16.

PMID:
22422294
13.

Investigation of Cyprinid herpesvirus-3 genetic diversity by a multi-locus variable number of tandem repeats analysis.

Avarre JC, Madeira JP, Santika A, Zainun Z, Baud M, Cabon J, Caruso D, Castric J, Bigarré L, Engelsma M, Maskur M.

J Virol Methods. 2011 May;173(2):320-7. doi: 10.1016/j.jviromet.2011.03.002. Epub 2011 Mar 8.

PMID:
21392536
14.

A simple and innovative method for species identification of phytoplankton cells on minute quantities of DNA.

Masseret E, Enquebecq M, Laabir M, Genovesi B, Vaquer A, Avarre JC.

Environ Microbiol Rep. 2010 Dec;2(6):715-9. doi: 10.1111/j.1758-2229.2010.00164.x.

PMID:
23766275
15.

Innovative integrated system for real-time measurement of hybridization and melting on standard format microarrays.

Marcy Y, Cousin PY, Rattier M, Cerovic G, Escalier G, Béna G, Guéron M, McDonagh L, le Boulaire F, Bénisty H, Weisbuch C, Avarre JC.

Biotechniques. 2008 Jun;44(7):913-20. doi: 10.2144/000112758.

16.

Isolation and functional characterization of a new shrimp ovarian peritrophin with antimicrobial activity from Fenneropenaeus merguiensis.

Loongyai W, Avarre JC, Cerutti M, Lubzens E, Chotigeat W.

Mar Biotechnol (NY). 2007 Sep-Oct;9(5):624-37. Epub 2007 Jul 21.

PMID:
17641929
17.

Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia.

Giraud E, Moulin L, Vallenet D, Barbe V, Cytryn E, Avarre JC, Jaubert M, Simon D, Cartieaux F, Prin Y, Bena G, Hannibal L, Fardoux J, Kojadinovic M, Vuillet L, Lajus A, Cruveiller S, Rouy Z, Mangenot S, Segurens B, Dossat C, Franck WL, Chang WS, Saunders E, Bruce D, Richardson P, Normand P, Dreyfus B, Pignol D, Stacey G, Emerich D, Verméglio A, Médigue C, Sadowsky M.

Science. 2007 Jun 1;316(5829):1307-12.

19.

Hybridization of genomic DNA to microarrays: a challenge for the analysis of environmental samples.

Avarre JC, de Lajudie P, Béna G.

J Microbiol Methods. 2007 May;69(2):242-8. Epub 2006 Dec 26. Review.

PMID:
17188770
20.

First evidence of the activation of Cg-timp, an immune response component of Pacific oysters, through a damage-associated molecular pattern pathway.

Montagnani C, Avarre JC, de Lorgeril J, Quiquand M, Boulo V, Escoubas JM.

Dev Comp Immunol. 2007;31(1):1-11. Epub 2006 May 24.

PMID:
16793134
21.

Development of a lab-made microarray for analyzing the genetic diversity of nitrogen fixing symbionts Sinorhizobium meliloti and Sinorhizobium medicae.

Bailly X, Béna G, Lenief V, de Lajudie P, Avarre JC.

J Microbiol Methods. 2006 Oct;67(1):114-24. Epub 2006 Apr 19.

PMID:
16626823
22.

Nitrogen-fixing nodules from rose wood legume trees (Dalbergia spp.) endemic to Madagascar host seven different genera belonging to alpha- and beta-Proteobacteria.

Rasolomampianina R, Bailly X, Fetiarison R, Rabevohitra R, Béna G, Ramaroson L, Raherimandimby M, Moulin L, De Lajudie P, Dreyfus B, Avarre JC.

Mol Ecol. 2005 Nov;14(13):4135-46.

PMID:
16262864
23.

Carotenoid and retinoid transport to fish oocytes and eggs: what is the role of retinol binding protein?

Lubzens E, Lissauer L, Levavi-Sivan B, Avarre JC, Sammar M.

Mol Aspects Med. 2003 Dec;24(6):441-57. Review.

PMID:
14585315
24.
25.

Response of Penaeus indicus females at two different stages of ovarian development to a lethal infection with Vibrio penaeicida.

Avarre JC, Saulnier D, Labreuche Y, Ansquer D, Tietz A, Lubzens E.

J Invertebr Pathol. 2003 Jan;82(1):23-33.

PMID:
12581716
27.

Rapid and sensitive PCR detection of Vibrio penaeicida, the putative etiological agent of syndrome 93 in New Caledonia.

Saulnier D, Avarre JC, Le Moullac G, Ansquer D, Levy P, Vonau V.

Dis Aquat Organ. 2000 Mar 14;40(2):109-15.

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