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Items: 48

1.

Progress update from the hippocampal subfields group.

Olsen RK, Carr VA, Daugherty AM, La Joie R, Amaral RSC, Amunts K, Augustinack JC, Bakker A, Bender AR, Berron D, Boccardi M, Bocchetta M, Burggren AC, Chakravarty MM, Chételat G, de Flores R, DeKraker J, Ding SL, Geerlings MI, Huang Y, Insausti R, Johnson EG, Kanel P, Kedo O, Kennedy KM, Keresztes A, Lee JK, Lindenberger U, Mueller SG, Mulligan EM, Ofen N, Palombo DJ, Pasquini L, Pluta J, Raz N, Rodrigue KM, Schlichting ML, Lee Shing Y, Stark CEL, Steve TA, Suthana NA, Wang L, Werkle-Bergner M, Yushkevich PA, Yu Q, Wisse LEM; Hippocampal Subfields Group.

Alzheimers Dement (Amst). 2019 Jun 13;11:439-449. doi: 10.1016/j.dadm.2019.04.001. eCollection 2019 Dec.

2.

Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann's area 32 and area 21.

Magnain C, Augustinack JC, Tirrell L, Fogarty M, Frosch MP, Boas D, Fischl B, Rockland KS.

Brain Struct Funct. 2019 Jan;224(1):351-362. doi: 10.1007/s00429-018-1777-z. Epub 2018 Oct 17.

PMID:
30328512
3.

Multimodal Characterization of the Late Effects of Traumatic Brain Injury: A Methodological Overview of the Late Effects of Traumatic Brain Injury Project.

Edlow BL, Keene CD, Perl DP, Iacono D, Folkerth RD, Stewart W, Mac Donald CL, Augustinack J, Diaz-Arrastia R, Estrada C, Flannery E, Gordon WA, Grabowski TJ, Hansen K, Hoffman J, Kroenke C, Larson EB, Lee P, Mareyam A, McNab JA, McPhee J, Moreau AL, Renz A, Richmire K, Stevens A, Tang CY, Tirrell LS, Trittschuh EH, van der Kouwe A, Varjabedian A, Wald LL, Wu O, Yendiki A, Young L, Zöllei L, Fischl B, Crane PK, Dams-O'Connor K.

J Neurotrauma. 2018 Jul 15;35(14):1604-1619. doi: 10.1089/neu.2017.5457. Epub 2018 May 3.

4.

as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity.

Wang H, Magnain C, Wang R, Dubb J, Varjabedian A, Tirrell LS, Stevens A, Augustinack JC, Konukoglu E, Aganj I, Frosch MP, Schmahmann JD, Fischl B, Boas DA.

Neuroimage. 2018 Jan 15;165:56-68. doi: 10.1016/j.neuroimage.2017.10.012. Epub 2017 Oct 7.

5.

High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas.

Saygin ZM, Kliemann D, Iglesias JE, van der Kouwe AJW, Boyd E, Reuter M, Stevens A, Van Leemput K, McKee A, Frosch MP, Fischl B, Augustinack JC; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2017 Jul 15;155:370-382. doi: 10.1016/j.neuroimage.2017.04.046. Epub 2017 May 4.

6.

Differential Regional Distribution of Juxtacortical White Matter Signal Abnormalities in Aging and Alzheimer's Disease.

Lindemer ER, Greve DN, Fischl B, Augustinack JC, Salat DH; Alzheimer’s Disease Neuroimaging Initiative.

J Alzheimers Dis. 2017;57(1):293-303. doi: 10.3233/JAD-161057.

7.

Regional staging of white matter signal abnormalities in aging and Alzheimer's disease.

Lindemer ER, Greve DN, Fischl BR, Augustinack JC, Salat DH.

Neuroimage Clin. 2017 Jan 23;14:156-165. doi: 10.1016/j.nicl.2017.01.022. eCollection 2017.

8.

A harmonized segmentation protocol for hippocampal and parahippocampal subregions: Why do we need one and what are the key goals?

Wisse LEM, Daugherty AM, Olsen RK, Berron D, Carr VA, Stark CEL, Amaral RSC, Amunts K, Augustinack JC, Bender AR, Bernstein JD, Boccardi M, Bocchetta M, Burggren A, Chakravarty MM, Chupin M, Ekstrom A, de Flores R, Insausti R, Kanel P, Kedo O, Kennedy KM, Kerchner GA, LaRocque KF, Liu X, Maass A, Malykhin N, Mueller SG, Ofen N, Palombo DJ, Parekh MB, Pluta JB, Pruessner JC, Raz N, Rodrigue KM, Schoemaker D, Shafer AT, Steve TA, Suthana N, Wang L, Winterburn JL, Yassa MA, Yushkevich PA, la Joie R; Hippocampal Subfields Group.

Hippocampus. 2017 Jan;27(1):3-11. doi: 10.1002/hipo.22671. Epub 2016 Nov 15.

9.

Postmortem imaging and neuropathologic correlations.

Augustinack JC, van der Kouwe AJ.

Handb Clin Neurol. 2016;136:1321-39. doi: 10.1016/B978-0-444-53486-6.00069-7. Review.

PMID:
27430472
10.

Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases.

Iglesias JE, Van Leemput K, Augustinack J, Insausti R, Fischl B, Reuter M; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2016 Nov 1;141:542-555. doi: 10.1016/j.neuroimage.2016.07.020. Epub 2016 Jul 15.

11.

Rapid multi-orientation quantitative susceptibility mapping.

Bilgic B, Xie L, Dibb R, Langkammer C, Mutluay A, Ye H, Polimeni JR, Augustinack J, Liu C, Wald LL, Setsompop K.

Neuroimage. 2016 Jan 15;125:1131-1141. doi: 10.1016/j.neuroimage.2015.08.015. Epub 2015 Aug 12.

12.

Memory Part 3: The Role of the Fornix and Clinical Cases.

Raslau FD, Augustinack JC, Klein AP, Ulmer JL, Mathews VP, Mark LP.

AJNR Am J Neuroradiol. 2015 Sep;36(9):1604-8. doi: 10.3174/ajnr.A4371. Epub 2015 Jun 4. No abstract available.

13.

A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI.

Iglesias JE, Augustinack JC, Nguyen K, Player CM, Player A, Wright M, Roy N, Frosch MP, McKee AC, Wald LL, Fischl B, Van Leemput K; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2015 Jul 15;115:117-37. doi: 10.1016/j.neuroimage.2015.04.042. Epub 2015 Apr 29.

14.

Optical coherence tomography visualizes neurons in human entorhinal cortex.

Magnain C, Augustinack JC, Konukoglu E, Frosch MP, Sakadžić S, Varjabedian A, Garcia N, Wedeen VJ, Boas DA, Fischl B.

Neurophotonics. 2015 Feb 9;2(1):015004.

15.

Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: towards a harmonized segmentation protocol.

Yushkevich PA, Amaral RS, Augustinack JC, Bender AR, Bernstein JD, Boccardi M, Bocchetta M, Burggren AC, Carr VA, Chakravarty MM, Chételat G, Daugherty AM, Davachi L, Ding SL, Ekstrom A, Geerlings MI, Hassan A, Huang Y, Iglesias JE, La Joie R, Kerchner GA, LaRocque KF, Libby LA, Malykhin N, Mueller SG, Olsen RK, Palombo DJ, Parekh MB, Pluta JB, Preston AR, Pruessner JC, Ranganath C, Raz N, Schlichting ML, Schoemaker D, Singh S, Stark CE, Suthana N, Tompary A, Turowski MM, Van Leemput K, Wagner AD, Wang L, Winterburn JL, Wisse LE, Yassa MA, Zeineh MM; Hippocampal Subfields Group (HSG).

Neuroimage. 2015 May 1;111:526-41. doi: 10.1016/j.neuroimage.2015.01.004. Epub 2015 Jan 14.

16.

H.M.'s contributions to neuroscience: a review and autopsy studies.

Augustinack JC, van der Kouwe AJ, Salat DH, Benner T, Stevens AA, Annese J, Fischl B, Frosch MP, Corkin S.

Hippocampus. 2014 Nov;24(11):1267-86. doi: 10.1002/hipo.22354. Epub 2014 Sep 23.

17.

Corrigendum to "Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex" [NeuroImage 69 (2013) 87-100].

McNab JA, Polimeni JR, Wang R, Augustinack JC, Fujimoto K, Stevens A, Triantafyllou C, Janssens T, Farivar R, Folkerth RD, Vanduffel W, Wald LL.

Neuroimage. 2013 Nov 1;81:505. doi: 10.1016/j.neuroimage.2013.04.037. Epub 2013 Apr 25. No abstract available.

PMID:
30180375
18.

Blockface histology with optical coherence tomography: a comparison with Nissl staining.

Magnain C, Augustinack JC, Reuter M, Wachinger C, Frosch MP, Ragan T, Akkin T, Wedeen VJ, Boas DA, Fischl B.

Neuroimage. 2014 Jan 1;84:524-33. doi: 10.1016/j.neuroimage.2013.08.072. Epub 2013 Sep 13.

19.

Medial temporal cortices in ex vivo magnetic resonance imaging.

Augustinack JC, van der Kouwe AJ, Fischl B.

J Comp Neurol. 2013 Dec 15;521(18):4177-88. doi: 10.1002/cne.23432. Review.

20.

MRI parcellation of ex vivo medial temporal lobe.

Augustinack JC, Magnain C, Reuter M, van der Kouwe AJ, Boas D, Fischl B.

Neuroimage. 2014 Jun;93 Pt 2:252-9. doi: 10.1016/j.neuroimage.2013.05.053. Epub 2013 May 21. Review.

21.

Harnessing advances in structural MRI to enhance research on Parkinson's disease.

Ziegler DA, Augustinack JC.

Imaging Med. 2013 Apr;5(2):91-94. No abstract available.

22.

Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex.

McNab JA, Polimeni JR, Wang R, Augustinack JC, Fujimoto K, Stevens A, Triantafyllou C, Janssens T, Farivar R, Folkerth RD, Vanduffel W, Wald LL.

Neuroimage. 2013 Apr 1;69:87-100. doi: 10.1016/j.neuroimage.2012.11.065. Epub 2012 Dec 16. Erratum in: Neuroimage. 2013 Nov 1;81:505. Triantafyllou, Christina [added]. Neuroimage. 2013 Nov 1;81:505.

23.

Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI.

Augustinack JC, Huber KE, Stevens AA, Roy M, Frosch MP, van der Kouwe AJ, Wald LL, Van Leemput K, McKee AC, Fischl B; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2013 Jan 1;64:32-42. doi: 10.1016/j.neuroimage.2012.08.071. Epub 2012 Aug 30.

24.

Entorhinal verrucae geometry is coincident and correlates with Alzheimer's lesions: a combined neuropathology and high-resolution ex vivo MRI analysis.

Augustinack JC, Huber KE, Postelnicu GM, Kakunoori S, Wang R, van der Kouwe AJ, Wald LL, Stein TD, Frosch MP, Fischl B.

Acta Neuropathol. 2012 Jan;123(1):85-96. doi: 10.1007/s00401-011-0929-5. Epub 2011 Dec 13.

25.

Automated probabilistic reconstruction of white-matter pathways in health and disease using an atlas of the underlying anatomy.

Yendiki A, Panneck P, Srinivasan P, Stevens A, Zöllei L, Augustinack J, Wang R, Salat D, Ehrlich S, Behrens T, Jbabdi S, Gollub R, Fischl B.

Front Neuroinform. 2011 Oct 14;5:23. doi: 10.3389/fninf.2011.00023. eCollection 2011.

26.

Connectivity-based segmentation of human amygdala nuclei using probabilistic tractography.

Saygin ZM, Osher DE, Augustinack J, Fischl B, Gabrieli JD.

Neuroimage. 2011 Jun 1;56(3):1353-61. doi: 10.1016/j.neuroimage.2011.03.006. Epub 2011 Mar 8.

27.

Evaluating the validity of volume-based and surface-based brain image registration for developmental cognitive neuroscience studies in children 4 to 11 years of age.

Ghosh SS, Kakunoori S, Augustinack J, Nieto-Castanon A, Kovelman I, Gaab N, Christodoulou JA, Triantafyllou C, Gabrieli JD, Fischl B.

Neuroimage. 2010 Oct 15;53(1):85-93. doi: 10.1016/j.neuroimage.2010.05.075. Epub 2010 Jun 4.

28.

Direct visualization of the perforant pathway in the human brain with ex vivo diffusion tensor imaging.

Augustinack JC, Helmer K, Huber KE, Kakunoori S, Zöllei L, Fischl B.

Front Hum Neurosci. 2010 May 28;4:42. doi: 10.3389/fnhum.2010.00042. eCollection 2010.

29.

Automated segmentation of hippocampal subfields from ultra-high resolution in vivo MRI.

Van Leemput K, Bakkour A, Benner T, Wiggins G, Wald LL, Augustinack J, Dickerson BC, Golland P, Fischl B.

Hippocampus. 2009 Jun;19(6):549-57. doi: 10.1002/hipo.20615.

30.

Predicting the location of entorhinal cortex from MRI.

Fischl B, Stevens AA, Rajendran N, Yeo BT, Greve DN, Van Leemput K, Polimeni JR, Kakunoori S, Buckner RL, Pacheco J, Salat DH, Melcher J, Frosch MP, Hyman BT, Grant PE, Rosen BR, van der Kouwe AJ, Wiggins GC, Wald LL, Augustinack JC.

Neuroimage. 2009 Aug 1;47(1):8-17. doi: 10.1016/j.neuroimage.2009.04.033. Epub 2009 Apr 16.

31.

Model-based segmentation of hippocampal subfields in ultra-high resolution in vivo MRI.

Van Leemput K, Bakkour A, Benner T, Wiggins G, Wald LL, Augustinack J, Dickerson BC, Golland P, Fischl B.

Med Image Comput Comput Assist Interv. 2008;11(Pt 1):235-43.

32.

The intrinsic shape of human and macaque primary visual cortex.

Hinds O, Polimeni JR, Rajendran N, Balasubramanian M, Wald LL, Augustinack JC, Wiggins G, Rosas HD, Fischl B, Schwartz EL.

Cereb Cortex. 2008 Nov;18(11):2586-95. doi: 10.1093/cercor/bhn016. Epub 2008 Feb 27.

33.

Cortical folding patterns and predicting cytoarchitecture.

Fischl B, Rajendran N, Busa E, Augustinack J, Hinds O, Yeo BT, Mohlberg H, Amunts K, Zilles K.

Cereb Cortex. 2008 Aug;18(8):1973-80. Epub 2007 Dec 12.

34.

Accurate prediction of V1 location from cortical folds in a surface coordinate system.

Hinds OP, Rajendran N, Polimeni JR, Augustinack JC, Wiggins G, Wald LL, Diana Rosas H, Potthast A, Schwartz EL, Fischl B.

Neuroimage. 2008 Feb 15;39(4):1585-99. Epub 2007 Nov 6.

35.

Differential effects of aging and Alzheimer's disease on medial temporal lobe cortical thickness and surface area.

Dickerson BC, Feczko E, Augustinack JC, Pacheco J, Morris JC, Fischl B, Buckner RL.

Neurobiol Aging. 2009 Mar;30(3):432-40. Epub 2007 Sep 14.

36.

An MRI-based method for measuring volume, thickness and surface area of entorhinal, perirhinal, and posterior parahippocampal cortex.

Feczko E, Augustinack JC, Fischl B, Dickerson BC.

Neurobiol Aging. 2009 Mar;30(3):420-31. Epub 2007 Sep 11.

37.

Molecular imaging with Pittsburgh Compound B confirmed at autopsy: a case report.

Bacskai BJ, Frosch MP, Freeman SH, Raymond SB, Augustinack JC, Johnson KA, Irizarry MC, Klunk WE, Mathis CA, Dekosky ST, Greenberg SM, Hyman BT, Growdon JH.

Arch Neurol. 2007 Mar;64(3):431-4.

PMID:
17353389
38.

No alteration in tau exon 10 alternative splicing in tangle-bearing neurons of the Alzheimer's disease brain.

Ingelsson M, Ramasamy K, Cantuti-Castelvetri I, Skoglund L, Matsui T, Orne J, Kowa H, Raju S, Vanderburg CR, Augustinack JC, de Silva R, Lees AJ, Lannfelt L, Growdon JH, Frosch MP, Standaert DG, Irizarry MC, Hyman BT.

Acta Neuropathol. 2006 Oct;112(4):439-49. Epub 2006 Jun 27.

PMID:
16802167
39.

Detection of entorhinal layer II using 7Tesla [corrected] magnetic resonance imaging.

Augustinack JC, van der Kouwe AJ, Blackwell ML, Salat DH, Wiggins CJ, Frosch MP, Wiggins GC, Potthast A, Wald LL, Fischl BR.

Ann Neurol. 2005 Apr;57(4):489-94. Erratum in: Ann Neurol. 2005 Jul;58(1):172.

40.

Transcriptional and conformational changes of the tau molecule in Alzheimer's disease.

Hyman BT, Augustinack JC, Ingelsson M.

Biochim Biophys Acta. 2005 Jan 3;1739(2-3):150-7. Review.

41.

Caspase activation and neuroprotection in caspase-3- deficient mice after in vivo cerebral ischemia and in vitro oxygen glucose deprivation.

Le DA, Wu Y, Huang Z, Matsushita K, Plesnila N, Augustinack JC, Hyman BT, Yuan J, Kuida K, Flavell RA, Moskowitz MA.

Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):15188-93. Epub 2002 Nov 1.

42.
43.

Effects of frequent marijuana use on memory-related regional cerebral blood flow.

Block RI, O'Leary DS, Hichwa RD, Augustinack JC, Boles Ponto LL, Ghoneim MM, Arndt S, Hurtig RR, Watkins GL, Hall JA, Nathan PE, Andreasen NC.

Pharmacol Biochem Behav. 2002 May;72(1-2):237-50.

PMID:
11900794
44.

Specific tau phosphorylation sites correlate with severity of neuronal cytopathology in Alzheimer's disease.

Augustinack JC, Schneider A, Mandelkow EM, Hyman BT.

Acta Neuropathol. 2002 Jan;103(1):26-35.

PMID:
11837744
45.

The parahippocampal gyrus in Alzheimer's disease. Clinical and preclinical neuroanatomical correlates.

Van Hoesen GW, Augustinack JC, Dierking J, Redman SJ, Thangavel R.

Ann N Y Acad Sci. 2000 Jun;911:254-74. Review.

PMID:
10911879
46.

Cerebellar hypoactivity in frequent marijuana users.

Block RI, O'Leary DS, Hichwa RD, Augustinack JC, Ponto LL, Ghoneim MM, Arndt S, Ehrhardt JC, Hurtig RR, Watkins GL, Hall JA, Nathan PE, Andreasen NC.

Neuroreport. 2000 Mar 20;11(4):749-53.

PMID:
10757513
47.

Effects of frequent marijuana use on brain tissue volume and composition.

Block RI, O'Leary DS, Ehrhardt JC, Augustinack JC, Ghoneim MM, Arndt S, Hall JA.

Neuroreport. 2000 Feb 28;11(3):491-6.

PMID:
10718301
48.

Ventromedial temporal lobe pathology in dementia, brain trauma, and schizophrenia.

Van Hoesen GW, Augustinack JC, Redman SJ.

Ann N Y Acad Sci. 1999 Jun 29;877:575-94. Review.

PMID:
10415672

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