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Items: 28


Protein Corona Composition of Silica Nanoparticles in Complex Media: Nanoparticle Size does not Matter.

Marichal L, Klein G, Armengaud J, Boulard Y, Chédin S, Labarre J, Pin S, Renault JP, Aude JC.

Nanomaterials (Basel). 2020 Jan 29;10(2). pii: E240. doi: 10.3390/nano10020240.


Protein-Nanoparticle Interactions: What Are the Protein-Corona Thickness and Organization?

Marichal L, Giraudon-Colas G, Cousin F, Thill A, Labarre J, Boulard Y, Aude JC, Pin S, Renault JP.

Langmuir. 2019 Aug 20;35(33):10831-10837. doi: 10.1021/acs.langmuir.9b01373. Epub 2019 Aug 6.


Dynamic properties of glucose complexity during the course of critical illness: a pilot study.

Godat E, Preiser JC, Aude JC, Kalfon P.

J Clin Monit Comput. 2019 Mar 19. doi: 10.1007/s10877-019-00299-8. [Epub ahead of print]


Combining Homologous Recombination and Phosphopeptide-binding Data to Predict the Impact of BRCA1 BRCT Variants on Cancer Risk.

Petitalot A, Dardillac E, Jacquet E, Nhiri N, Guirouilh-Barbat J, Julien P, Bouazzaoui I, Bonte D, Feunteun J, Schnell JA, Lafitte P, Aude JC, Noguès C, Rouleau E, Lidereau R, Lopez BS, Zinn-Justin S, Caputo SM; UNICANCER Genetic Group BRCA network.

Mol Cancer Res. 2019 Jan;17(1):54-69. doi: 10.1158/1541-7786.MCR-17-0357. Epub 2018 Sep 26.


Importance of Post-translational Modifications in the Interaction of Proteins with Mineral Surfaces: The Case of Arginine Methylation and Silica surfaces.

Marichal L, Renault JP, Chédin S, Lagniel G, Klein G, Aude JC, Tellier-Lebegue C, Armengaud J, Pin S, Labarre J, Boulard Y.

Langmuir. 2018 May 8;34(18):5312-5322. doi: 10.1021/acs.langmuir.8b00752. Epub 2018 Apr 25.


RNA-binding proteins are a major target of silica nanoparticles in cell extracts.

Klein G, Mathé C, Biola-Clier M, Devineau S, Drouineau E, Hatem E, Marichal L, Alonso B, Gaillard JC, Lagniel G, Armengaud J, Carrière M, Chédin S, Boulard Y, Pin S, Renault JP, Aude JC, Labarre J.

Nanotoxicology. 2016 Dec;10(10):1555-1564. Epub 2016 Oct 25.


Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells.

de Dieuleveult M, Yen K, Hmitou I, Depaux A, Boussouar F, Bou Dargham D, Jounier S, Humbertclaude H, Ribierre F, Baulard C, Farrell NP, Park B, Keime C, Carrière L, Berlivet S, Gut M, Gut I, Werner M, Deleuze JF, Olaso R, Aude JC, Chantalat S, Pugh BF, Gérard M.

Nature. 2016 Feb 4;530(7588):113-6. doi: 10.1038/nature16505. Epub 2016 Jan 27.


Interferences of Silica Nanoparticles in Green Fluorescent Protein Folding Processes.

Klein G, Devineau S, Aude JC, Boulard Y, Pasquier H, Labarre J, Pin S, Renault JP.

Langmuir. 2016 Jan 12;32(1):195-202. doi: 10.1021/acs.langmuir.5b03890. Epub 2015 Dec 30.


Structural determinants for protein adsorption/non-adsorption to silica surface.

Mathé C, Devineau S, Aude JC, Lagniel G, Chédin S, Legros V, Mathon MH, Renault JP, Pin S, Boulard Y, Labarre J.

PLoS One. 2013 Nov 25;8(11):e81346. doi: 10.1371/journal.pone.0081346. eCollection 2013.


Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells.

Carrière L, Graziani S, Alibert O, Ghavi-Helm Y, Boussouar F, Humbertclaude H, Jounier S, Aude JC, Keime C, Murvai J, Foglio M, Gut M, Gut I, Lathrop M, Soutourina J, Gérard M, Werner M.

Nucleic Acids Res. 2012 Jan;40(1):270-83. doi: 10.1093/nar/gkr737. Epub 2011 Sep 12.


Endoplasmic reticulum is a major target of cadmium toxicity in yeast.

Gardarin A, Chédin S, Lagniel G, Aude JC, Godat E, Catty P, Labarre J.

Mol Microbiol. 2010 May;76(4):1034-48. doi: 10.1111/j.1365-2958.2010.07166.x. Epub 2010 Apr 23.


Genome-wide location analysis reveals a role for Sub1 in RNA polymerase III transcription.

Tavenet A, Suleau A, Dubreuil G, Ferrari R, Ducrot C, Michaut M, Aude JC, Dieci G, Lefebvre O, Conesa C, Acker J.

Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14265-70. doi: 10.1073/pnas.0900162106. Epub 2009 Aug 11.


Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription.

Ghavi-Helm Y, Michaut M, Acker J, Aude JC, Thuriaux P, Werner M, Soutourina J.

Genes Dev. 2008 Jul 15;22(14):1934-47. doi: 10.1101/gad.471908.


InteroPORC: automated inference of highly conserved protein interaction networks.

Michaut M, Kerrien S, Montecchi-Palazzi L, Chauvat F, Cassier-Chauvat C, Aude JC, Legrain P, Hermjakob H.

Bioinformatics. 2008 Jul 15;24(14):1625-31. doi: 10.1093/bioinformatics/btn249. Epub 2008 May 28.


Cadmium triggers an integrated reprogramming of the metabolism of Synechocystis PCC6803, under the control of the Slr1738 regulator.

Houot L, Floutier M, Marteyn B, Michaut M, Picciocchi A, Legrain P, Aude JC, Cassier-Chauvat C, Chauvat F.

BMC Genomics. 2007 Oct 2;8:350.


T-cell transcriptome analysis points up a thymic disorder in idiopathic nephrotic syndrome.

Mansour H, Cheval L, Elalouf JM, Aude JC, Alyanakian MA, Mougenot B, Doucet A, Deschênes G.

Kidney Int. 2005 Jun;67(6):2168-77.


Balancing protein similarity and gene co-expression reveals new links between genetic conservation and developmental diversity in invertebrates.

Lefebvre C, Aude JC, Glémet E, Néri C.

Bioinformatics. 2005 Apr 15;21(8):1550-8. Epub 2004 Dec 14.


Mammalian antioxidant defenses are not inducible by H2O2.

Desaint S, Luriau S, Aude JC, Rousselet G, Toledano MB.

J Biol Chem. 2004 Jul 23;279(30):31157-63. Epub 2004 May 20.


Fundamentals of massive automatic pairwise alignments of protein sequences: theoretical significance of Z-value statistics.

Bastien O, Aude JC, Roy S, Maréchal E.

Bioinformatics. 2004 Mar 1;20(4):534-7. Epub 2004 Jan 22.


A panoramic view of gene expression in the human kidney.

Chabardès-Garonne D, Mejéan A, Aude JC, Cheval L, Di Stefano A, Gaillard MC, Imbert-Teboul M, Wittner M, Balian C, Anthouard V, Robert C, Ségurens B, Wincker P, Weissenbach J, Doucet A, Elalouf JM.

Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13710-5. Epub 2003 Oct 31.


Evolution of genes, evolution of species: the case of aminoacyl-tRNA synthetases.

Diaz-Lazcoz Y, Aude JC, Nitschké P, Chiapello H, Landès-Devauchelle C, Risler JL.

Mol Biol Evol. 1998 Nov;15(11):1548-61.


An incremental algorithm for Z-value computations.

Aude JC, Louis A.

Comput Chem. 2002 Jul;26(5):403-11.


Large-scale analysis of gene expression: methods and application to the kidney.

Cheval L, Virlon B, Billon E, Aude JC, Elalouf JM, Doucet A.

J Nephrol. 2002 Mar-Apr;15 Suppl 5:S170-83. Review.


Sulfur sparing in the yeast proteome in response to sulfur demand.

Fauchon M, Lagniel G, Aude JC, Lombardia L, Soularue P, Petat C, Marguerie G, Sentenac A, Werner M, Labarre J.

Mol Cell. 2002 Apr;9(4):713-23.


Renal transcriptomes: segmental analysis of differential expression.

Elalouf JM, Aude JC, Billon E, Cheval L, Doucet A, Virlon B.

Exp Nephrol. 2002;10(2):75-81. Review.


Massive sequence comparisons as a help in annotating genomic sequences.

Louis A, Ollivier E, Aude JC, Risler JL.

Genome Res. 2001 Jul;11(7):1296-303.


Significance of Z-value statistics of Smith-Waterman scores for protein alignments.

Comet JP, Aude JC, Glémet E, Risler JL, Hénaut A, Slonimski PP, Codani JJ.

Comput Chem. 1999 Jun 15;23(3-4):317-31.


Applications of the pyramidal clustering method to biological objects.

Aude JC, Diaz-Lazcoz Y, Codani JJ, Risler JL.

Comput Chem. 1999 Jun 15;23(3-4):303-15.


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