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Items: 1 to 50 of 60

1.

The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana.

Gully K, Pelletier S, Guillou MC, Ferrand M, Aligon S, Pokotylo I, Perrin A, Vergne E, Fagard M, Ruelland E, Grappin P, Bucher E, Renou JP, Aubourg S.

J Exp Bot. 2019 Feb 4. doi: 10.1093/jxb/ery454. [Epub ahead of print]

PMID:
30715439
2.

Acibenzolar-S-Methyl Reprograms Apple Transcriptome Toward Resistance to Rosy Apple Aphid.

Warneys R, Gaucher M, Robert P, Aligon S, Anton S, Aubourg S, Barthes N, Braud F, Cournol R, Gadenne C, Heintz C, Brisset MN, Degrave A.

Front Plant Sci. 2018 Dec 12;9:1795. doi: 10.3389/fpls.2018.01795. eCollection 2018.

3.

Large scale study of anti-sense regulation by differential network analysis.

Legeay M, Aubourg S, Renou JP, Duval B.

BMC Syst Biol. 2018 Nov 20;12(Suppl 5):95. doi: 10.1186/s12918-018-0613-7.

4.

Effect of high-pressure processing pretreatment on the physical properties and colour assessment of frozen European hake (Merluccius merluccius) during long term storage.

Pita-Calvo C, Guerra-Rodríguez E, Saraiva JA, Aubourg SP, Vázquez M.

Food Res Int. 2018 Oct;112:233-240. doi: 10.1016/j.foodres.2018.06.042. Epub 2018 Jun 21.

PMID:
30131133
5.

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits.

Hibrand Saint-Oyant L, Ruttink T, Hamama L, Kirov I, Lakhwani D, Zhou NN, Bourke PM, Daccord N, Leus L, Schulz D, Van de Geest H, Hesselink T, Van Laere K, Debray K, Balzergue S, Thouroude T, Chastellier A, Jeauffre J, Voisine L, Gaillard S, Borm TJA, Arens P, Voorrips RE, Maliepaard C, Neu E, Linde M, Le Paslier MC, Bérard A, Bounon R, Clotault J, Choisne N, Quesneville H, Kawamura K, Aubourg S, Sakr S, Smulders MJM, Schijlen E, Bucher E, Debener T, De Riek J, Foucher F.

Nat Plants. 2018 Jul;4(7):473-484. doi: 10.1038/s41477-018-0166-1. Epub 2018 Jun 11.

PMID:
29892093
6.

Effects of High-Pressure Treatment on the Muscle Proteome of Hake by Bottom-Up Proteomics.

Carrera M, Fidalgo LG, Saraiva JA, Aubourg SP.

J Agric Food Chem. 2018 May 2;66(17):4559-4570. doi: 10.1021/acs.jafc.8b00635. Epub 2018 Apr 24.

PMID:
29660290
7.

Impact of a packing medium with alga Bifurcaria bifurcata extract on canned Atlantic mackerel (Scomber scombrus) quality.

Barbosa RG, Trigo M, Fett R, Aubourg SP.

J Sci Food Agric. 2018 Jul;98(9):3462-3467. doi: 10.1002/jsfa.8861. Epub 2018 Feb 20.

PMID:
29297587
8.

Genome-Wide Association Mapping of Flowering and Ripening Periods in Apple.

Urrestarazu J, Muranty H, Denancé C, Leforestier D, Ravon E, Guyader A, Guisnel R, Feugey L, Aubourg S, Celton JM, Daccord N, Dondini L, Gregori R, Lateur M, Houben P, Ordidge M, Paprstein F, Sedlak J, Nybom H, Garkava-Gustavsson L, Troggio M, Bianco L, Velasco R, Poncet C, Théron A, Moriya S, Bink MCAM, Laurens F, Tartarini S, Durel CE.

Front Plant Sci. 2017 Nov 10;8:1923. doi: 10.3389/fpls.2017.01923. eCollection 2017.

9.

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development.

Daccord N, Celton JM, Linsmith G, Becker C, Choisne N, Schijlen E, van de Geest H, Bianco L, Micheletti D, Velasco R, Di Pierro EA, Gouzy J, Rees DJG, Guérif P, Muranty H, Durel CE, Laurens F, Lespinasse Y, Gaillard S, Aubourg S, Quesneville H, Weigel D, van de Weg E, Troggio M, Bucher E.

Nat Genet. 2017 Jul;49(7):1099-1106. doi: 10.1038/ng.3886. Epub 2017 Jun 5.

PMID:
28581499
10.

New icing media for quality enhancement of chilled hake (Merluccius merluccius) using a jumbo squid (Dosidicus gigas) skin extract.

Ezquerra-Brauer JM, Miranda JM, Chan-Higuera JE, Barros-Velázquez J, Aubourg SP.

J Sci Food Agric. 2017 Aug;97(10):3412-3419. doi: 10.1002/jsfa.8192. Epub 2017 Jan 13.

PMID:
28009054
11.

Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis.

Rigaill G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis-Rabusseau C, Soubigou-Taconnat L, Aubourg S, Lurin C, Martin-Magniette ML, Delannoy E.

Brief Bioinform. 2018 Jan 1;19(1):65-76. doi: 10.1093/bib/bbw092.

PMID:
27742662
12.

Identifying new sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia.

Blavet N, Blavet H, Muyle A, Käfer J, Cegan R, Deschamps C, Zemp N, Mousset S, Aubourg S, Bergero R, Charlesworth D, Hobza R, Widmer A, Marais GA.

BMC Genomics. 2015 Jul 25;16:546. doi: 10.1186/s12864-015-1698-7.

13.

Proteomics analysis in frozen horse mackerel previously high-pressure processed.

Pazos M, Méndez L, Vázquez M, Aubourg SP.

Food Chem. 2015 Oct 15;185:495-502. doi: 10.1016/j.foodchem.2015.03.144. Epub 2015 Apr 4.

PMID:
25952898
14.

In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs.

Martínez de Alba AE, Moreno AB, Gabriel M, Mallory AC, Christ A, Bounon R, Balzergue S, Aubourg S, Gautheret D, Crespi MD, Vaucheret H, Maizel A.

Nucleic Acids Res. 2015 Mar 11;43(5):2902-13. doi: 10.1093/nar/gkv119. Epub 2015 Feb 18.

15.

GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response.

Zaag R, Tamby JP, Guichard C, Tariq Z, Rigaill G, Delannoy E, Renou JP, Balzergue S, Mary-Huard T, Aubourg S, Martin-Magniette ML, Brunaud V.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1010-7. doi: 10.1093/nar/gku1155. Epub 2014 Nov 11.

16.

The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana.

Lange H, Zuber H, Sement FM, Chicher J, Kuhn L, Hammann P, Brunaud V, Bérard C, Bouteiller N, Balzergue S, Aubourg S, Martin-Magniette ML, Vaucheret H, Gagliardi D.

PLoS Genet. 2014 Aug 21;10(8):e1004564. doi: 10.1371/journal.pgen.1004564. eCollection 2014 Aug.

17.

Effect of the antioxidants composition in diet on the sensory and physical properties of frozen farmed Coho salmon (Oncorhynchus kisutch).

Rodríguez A, Latorre M, Gajardo M, Bunger A, Munizaga A, López L, Aubourg SP.

J Sci Food Agric. 2015 Apr;95(6):1199-206. doi: 10.1002/jsfa.6808. Epub 2014 Aug 4.

PMID:
25043293
18.

Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences.

Frei dit Frey N, Garcia AV, Bigeard J, Zaag R, Bueso E, Garmier M, Pateyron S, de Tauzia-Moreau ML, Brunaud V, Balzergue S, Colcombet J, Aubourg S, Martin-Magniette ML, Hirt H.

Genome Biol. 2014 Jun 30;15(6):R87. doi: 10.1186/gb-2014-15-6-r87.

19.

Widespread anti-sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post-transcriptional control.

Celton JM, Gaillard S, Bruneau M, Pelletier S, Aubourg S, Martin-Magniette ML, Navarro L, Laurens F, Renou JP.

New Phytol. 2014 Jul;203(1):287-99. doi: 10.1111/nph.12787. Epub 2014 Apr 1.

20.

Genetic dissection of a TIR-NB-LRR locus from the wild North American grapevine species Muscadinia rotundifolia identifies paralogous genes conferring resistance to major fungal and oomycete pathogens in cultivated grapevine.

Feechan A, Anderson C, Torregrosa L, Jermakow A, Mestre P, Wiedemann-Merdinoglu S, Merdinoglu D, Walker AR, Cadle-Davidson L, Reisch B, Aubourg S, Bentahar N, Shrestha B, Bouquet A, Adam-Blondon AF, Thomas MR, Dry IB.

Plant J. 2013 Nov;76(4):661-74. doi: 10.1111/tpj.12327. Epub 2013 Oct 17.

21.

Influence of air-drying temperature on drying kinetics, colour, firmness and biochemical characteristics of Atlantic salmon (Salmo salar L.) fillets.

Ortiz J, Lemus-Mondaca R, Vega-Gálvez A, Ah-Hen K, Puente-Diaz L, Zura-Bravo L, Aubourg S.

Food Chem. 2013 Aug 15;139(1-4):162-9. doi: 10.1016/j.foodchem.2013.01.037. Epub 2013 Jan 31.

PMID:
23561093
22.

Plant protein interactomes.

Braun P, Aubourg S, Van Leene J, De Jaeger G, Lurin C.

Annu Rev Plant Biol. 2013;64:161-87. doi: 10.1146/annurev-arplant-050312-120140. Epub 2013 Jan 16. Review.

PMID:
23330791
23.

Structural, functional, and evolutionary analysis of the unusually large stilbene synthase gene family in grapevine.

Parage C, Tavares R, Réty S, Baltenweck-Guyot R, Poutaraud A, Renault L, Heintz D, Lugan R, Marais GA, Aubourg S, Hugueney P.

Plant Physiol. 2012 Nov;160(3):1407-19. doi: 10.1104/pp.112.202705. Epub 2012 Sep 6.

24.

Microbial activity inhibition in chilled mackerel (Scomber scombrus) by employment of an organic acid-icing system.

Sanjuás-Rey M, Gallardo JM, Barros-Velázquez J, Aubourg SP.

J Food Sci. 2012 May;77(5):M264-9. doi: 10.1111/j.1750-3841.2012.02672.x. Epub 2012 Apr 17.

PMID:
22510040
25.

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis.

Roudier F, Ahmed I, Bérard C, Sarazin A, Mary-Huard T, Cortijo S, Bouyer D, Caillieux E, Duvernois-Berthet E, Al-Shikhley L, Giraut L, Després B, Drevensek S, Barneche F, Dèrozier S, Brunaud V, Aubourg S, Schnittger A, Bowler C, Martin-Magniette ML, Robin S, Caboche M, Colot V.

EMBO J. 2011 May 18;30(10):1928-38. doi: 10.1038/emboj.2011.103. Epub 2011 Apr 12.

26.

Exploration of plant genomes in the FLAGdb++ environment.

Dèrozier S, Samson F, Tamby JP, Guichard C, Brunaud V, Grevet P, Gagnot S, Label P, Leplé JC, Lecharny A, Aubourg S.

Plant Methods. 2011 Mar 29;7:8. doi: 10.1186/1746-4811-7-8.

27.

Unsupervised classification for tiling arrays: ChIP-chip and transcriptome.

Bérard C, Martin-Magniette ML, Brunaud V, Aubourg S, Robin S.

Stat Appl Genet Mol Biol. 2011 Nov 1;10(1). pii: /j/sagmb.2011.10.issue-1/1544-6115.1692/1544-6115.1692.xml. doi: 10.2202/1544-6115.1692.

PMID:
23089815
28.

Functional annotation, genome organization and phylogeny of the grapevine (Vitis vinifera) terpene synthase gene family based on genome assembly, FLcDNA cloning, and enzyme assays.

Martin DM, Aubourg S, Schouwey MB, Daviet L, Schalk M, Toub O, Lund ST, Bohlmann J.

BMC Plant Biol. 2010 Oct 21;10:226. doi: 10.1186/1471-2229-10-226.

29.

Unique genes in plants: specificities and conserved features throughout evolution.

Armisén D, Lecharny A, Aubourg S.

BMC Evol Biol. 2008 Oct 10;8:280. doi: 10.1186/1471-2148-8-280.

30.

Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5.

Benhamed M, Martin-Magniette ML, Taconnat L, Bitton F, Servet C, De Clercq R, De Meyer B, Buysschaert C, Rombauts S, Villarroel R, Aubourg S, Beynon J, Bhalerao RP, Coupland G, Gruissem W, Menke FL, Weisshaar B, Renou JP, Zhou DX, Hilson P.

Plant J. 2008 Nov;56(3):493-504. doi: 10.1111/j.1365-313X.2008.03606.x. Epub 2008 Sep 18.

31.

Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species.

Chantret N, Salse J, Sabot F, Bellec A, Laubin B, Dubois I, Dossat C, Sourdille P, Joudrier P, Gautier MF, Cattolico L, Beckert M, Aubourg S, Weissenbach J, Caboche M, Leroy P, Bernard M, Chalhoub B.

J Mol Evol. 2008 Feb;66(2):138-50. doi: 10.1007/s00239-008-9066-8. Epub 2008 Feb 15.

PMID:
18274696
32.

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome.

Aubourg S, Martin-Magniette ML, Brunaud V, Taconnat L, Bitton F, Balzergue S, Jullien PE, Ingouff M, Thareau V, Schiex T, Lecharny A, Renou JP.

BMC Genomics. 2007 Nov 2;8:401.

33.

CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform.

Gagnot S, Tamby JP, Martin-Magniette ML, Bitton F, Taconnat L, Balzergue S, Aubourg S, Renou JP, Lecharny A, Brunaud V.

Nucleic Acids Res. 2008 Jan;36(Database issue):D986-90. Epub 2007 Oct 16.

34.

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.

Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyère C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pè ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quétier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization.

Nature. 2007 Sep 27;449(7161):463-7. Epub 2007 Aug 26.

PMID:
17721507
35.

Characterization of Arabidopsis thaliana mismatch specific endonucleases: application to mutation discovery by TILLING in pea.

Triques K, Sturbois B, Gallais S, Dalmais M, Chauvin S, Clepet C, Aubourg S, Rameau C, Caboche M, Bendahmane A.

Plant J. 2007 Sep;51(6):1116-25. Epub 2007 Jul 25.

36.

Effects of storage in ozonised slurry ice on the sensory and microbial quality of sardine (Sardina pilchardus).

Campos CA, Rodríguez O, Losada V, Aubourg SP, Barros-Velázquez J.

Int J Food Microbiol. 2005 Aug 25;103(2):121-30.

PMID:
16083815
37.

Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops).

Chantret N, Salse J, Sabot F, Rahman S, Bellec A, Laubin B, Dubois I, Dossat C, Sourdille P, Joudrier P, Gautier MF, Cattolico L, Beckert M, Aubourg S, Weissenbach J, Caboche M, Bernard M, Leroy P, Chalhoub B.

Plant Cell. 2005 Apr;17(4):1033-45. Epub 2005 Mar 4.

38.

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts.

Aubourg S, Brunaud V, Bruyère C, Cock M, Cooke R, Cottet A, Couloux A, Déhais P, Deléage G, Duclert A, Echeverria M, Eschbach A, Falconet D, Filippi G, Gaspin C, Geourjon C, Grienenberger JM, Houlné G, Jamet E, Lechauve F, Leleu O, Leroy P, Mache R, Meyer C, Nedjari H, Negrutiu I, Orsini V, Peyretaillade E, Pommier C, Raes J, Risler JL, Rivière S, Rombauts S, Rouzé P, Schneider M, Schwob P, Small I, Soumayet-Kampetenga G, Stankovski D, Toffano C, Tognolli M, Caboche M, Lecharny A.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D641-6.

39.

Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications.

Hilson P, Allemeersch J, Altmann T, Aubourg S, Avon A, Beynon J, Bhalerao RP, Bitton F, Caboche M, Cannoot B, Chardakov V, Cognet-Holliger C, Colot V, Crowe M, Darimont C, Durinck S, Eickhoff H, de Longevialle AF, Farmer EE, Grant M, Kuiper MT, Lehrach H, Léon C, Leyva A, Lundeberg J, Lurin C, Moreau Y, Nietfeld W, Paz-Ares J, Reymond P, Rouzé P, Sandberg G, Segura MD, Serizet C, Tabrett A, Taconnat L, Thareau V, Van Hummelen P, Vercruysse S, Vuylsteke M, Weingartner M, Weisbeek PJ, Wirta V, Wittink FR, Zabeau M, Small I.

Genome Res. 2004 Oct;14(10B):2176-89.

40.

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.

Lurin C, Andrés C, Aubourg S, Bellaoui M, Bitton F, Bruyère C, Caboche M, Debast C, Gualberto J, Hoffmann B, Lecharny A, Le Ret M, Martin-Magniette ML, Mireau H, Peeters N, Renou JP, Szurek B, Taconnat L, Small I.

Plant Cell. 2004 Aug;16(8):2089-103. Epub 2004 Jul 21.

41.

Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements.

Lescot M, Rombauts S, Zhang J, Aubourg S, Mathé C, Jansson S, Rouzé P, Boerjan W.

Theor Appl Genet. 2004 Jun;109(1):10-22. Epub 2004 Apr 14.

PMID:
15085260
42.

FLAGdb++: a database for the functional analysis of the Arabidopsis genome.

Samson F, Brunaud V, Duchêne S, De Oliveira Y, Caboche M, Lecharny A, Aubourg S.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D347-50.

43.

Automatic design of gene-specific sequence tags for genome-wide functional studies.

Thareau V, Déhais P, Serizet C, Hilson P, Rouzé P, Aubourg S.

Bioinformatics. 2003 Nov 22;19(17):2191-8.

PMID:
14630647
44.

Introns in, introns out in plant gene families: a genomic approach of the dynamics of gene structure.

Lecharny A, Boudet N, Gy I, Aubourg S, Kreis M.

J Struct Funct Genomics. 2003;3(1-4):111-6.

PMID:
12836690
45.

CATMA: a complete Arabidopsis GST database.

Crowe ML, Serizet C, Thareau V, Aubourg S, Rouzé P, Hilson P, Beynon J, Weisbeek P, van Hummelen P, Reymond P, Paz-Ares J, Nietfeld W, Trick M.

Nucleic Acids Res. 2003 Jan 1;31(1):156-8.

46.

T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites.

Brunaud V, Balzergue S, Dubreucq B, Aubourg S, Samson F, Chauvin S, Bechtold N, Cruaud C, DeRose R, Pelletier G, Lepiniec L, Caboche M, Lecharny A.

EMBO Rep. 2002 Dec;3(12):1152-7. Epub 2002 Nov 21.

47.

Genomic analysis of the terpenoid synthase ( AtTPS) gene family of Arabidopsis thaliana.

Aubourg S, Lecharny A, Bohlmann J.

Mol Genet Genomics. 2002 Aug;267(6):730-45. Epub 2002 Jun 29.

PMID:
12207221
48.

Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabditis, and Drosophila.

Boudet N, Aubourg S, Toffano-Nioche C, Kreis M, Lecharny A.

Genome Res. 2001 Dec;11(12):2101-14.

49.

Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST and AtHD-GL2.

Tavares R, Aubourg S, Lecharny A, Kreis M.

Plant Mol Biol. 2000 Mar;42(5):703-17.

PMID:
10809443
50.

In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants.

Aubourg S, Boudet N, Kreis M, Lecharny A.

Plant Mol Biol. 2000 Mar;42(4):603-13.

PMID:
10809006

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