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Items: 17

1.

An adaptable multiple power source for mass spectrometry and other scientific instruments.

Lin TY, Anderson GA, Norheim RV, Prost SA, LaMarche BL, Leach FE 3rd, Auberry KJ, Smith RD, Koppenaal DW, Robinson EW, Paša-Tolić L.

Rev Sci Instrum. 2015 Sep;86(9):094102. doi: 10.1063/1.4930967.

PMID:
26429459
2.

Omics.pnl.gov: A Portal for the Distribution and Sharing of Multi-Disciplinary Pan-Omics Information.

Auberry KJ, Kiebel GR, Monroe ME, Adkins JN, Anderson GA, Smith RD.

J Proteomics Bioinform. 2010 Jan;3(1):1-4. No abstract available.

3.

An analysis pipeline for the inference of protein-protein interaction networks.

Taylor RC, Singhal M, Daly DS, Gilmore J, Cannon WR, Domico K, White AM, Auberry DL, Auberry KJ, Hooker BS, Hurst G, McDermott JE, McDonald WH, Pelletier DA, Schmoyer D, Wiley HS.

Int J Data Min Bioinform. 2009;3(4):409-30.

PMID:
20052905
4.

A method for investigating protein-protein interactions related to salmonella typhimurium pathogenesis.

Chowdhury SM, Shi L, Yoon H, Ansong C, Rommereim LM, Norbeck AD, Auberry KJ, Moore RJ, Adkins JN, Heffron F, Smith RD.

J Proteome Res. 2009 Mar;8(3):1504-14. doi: 10.1021/pr800865d.

5.

DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra.

Mayampurath AM, Jaitly N, Purvine SO, Monroe ME, Auberry KJ, Adkins JN, Smith RD.

Bioinformatics. 2008 Apr 1;24(7):1021-3. doi: 10.1093/bioinformatics/btn063. Epub 2008 Feb 26.

6.

Comparative bacterial proteomics: analysis of the core genome concept.

Callister SJ, McCue LA, Turse JE, Monroe ME, Auberry KJ, Smith RD, Adkins JN, Lipton MS.

PLoS One. 2008 Feb 6;3(2):e1542. doi: 10.1371/journal.pone.0001542.

7.

Spatial mapping of the neurite and soma proteomes reveals a functional Cdc42/Rac regulatory network.

Pertz OC, Wang Y, Yang F, Wang W, Gay LJ, Gristenko MA, Clauss TR, Anderson DJ, Liu T, Auberry KJ, Camp DG 2nd, Smith RD, Klemke RL.

Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):1931-6. doi: 10.1073/pnas.0706545105. Epub 2008 Feb 1.

8.

PRISM: a data management system for high-throughput proteomics.

Kiebel GR, Auberry KJ, Jaitly N, Clark DA, Monroe ME, Peterson ES, Tolić N, Anderson GA, Smith RD.

Proteomics. 2006 Mar;6(6):1783-90.

PMID:
16470653
9.

Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data.

Cannon WR, Jarman KH, Webb-Robertson BJ, Baxter DJ, Oehmen CS, Jarman KD, Heredia-Langner A, Auberry KJ, Anderson GA.

J Proteome Res. 2005 Sep-Oct;4(5):1687-98.

PMID:
16212422
10.

A proteomic study of the HUPO Plasma Proteome Project's pilot samples using an accurate mass and time tag strategy.

Adkins JN, Monroe ME, Auberry KJ, Shen Y, Jacobs JM, Camp DG 2nd, Vitzthum F, Rodland KD, Zangar RC, Smith RD, Pounds JG.

Proteomics. 2005 Aug;5(13):3454-66.

11.

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.

Kolker E, Picone AF, Galperin MY, Romine MF, Higdon R, Makarova KS, Kolker N, Anderson GA, Qiu X, Auberry KJ, Babnigg G, Beliaev AS, Edlefsen P, Elias DA, Gorby YA, Holzman T, Klappenbach JA, Konstantinidis KT, Land ML, Lipton MS, McCue LA, Monroe M, Pasa-Tolic L, Pinchuk G, Purvine S, Serres MH, Tsapin S, Zakrajsek BA, Zhu W, Zhou J, Larimer FW, Lawrence CE, Riley M, Collart FR, Yates JR 3rd, Smith RD, Giometti CS, Nealson KH, Fredrickson JK, Tiedje JM.

Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):2099-104. Epub 2005 Jan 31.

12.

Identification of proteins in human cytomegalovirus (HCMV) particles: the HCMV proteome.

Varnum SM, Streblow DN, Monroe ME, Smith P, Auberry KJ, Pasa-Tolic L, Wang D, Camp DG 2nd, Rodland K, Wiley S, Britt W, Shenk T, Smith RD, Nelson JA.

J Virol. 2004 Oct;78(20):10960-6. Erratum in: J Virol. 2004 Dec;78(23):13395.

13.

Multidimensional proteome analysis of human mammary epithelial cells.

Jacobs JM, Mottaz HM, Yu LR, Anderson DJ, Moore RJ, Chen WN, Auberry KJ, Strittmatter EF, Monroe ME, Thrall BD, Camp DG 2nd, Smith RD.

J Proteome Res. 2004 Jan-Feb;3(1):68-75.

PMID:
14998165
14.

High-efficiency on-line solid-phase extraction coupling to 15-150-microm-i.d. column liquid chromatography for proteomic analysis.

Shen Y, Moore RJ, Zhao R, Blonder J, Auberry DL, Masselon C, Pasa-Tolić L, Hixson KK, Auberry KJ, Smith RD.

Anal Chem. 2003 Jul 15;75(14):3596-3605.

PMID:
14570215
15.

Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses.

Petritis K, Kangas LJ, Ferguson PL, Anderson GA, Pasa-Tolić L, Lipton MS, Auberry KJ, Strittmatter EF, Shen Y, Zhao R, Smith RD.

Anal Chem. 2003 Mar 1;75(5):1039-48.

PMID:
12641221
16.

Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry.

Adkins JN, Varnum SM, Auberry KJ, Moore RJ, Angell NH, Smith RD, Springer DL, Pounds JG.

Mol Cell Proteomics. 2002 Dec;1(12):947-55.

17.

Electrospray ionization-Fourier transform ion cyclotron mass spectrometry using ion preselection and external accumulation for ultrahigh sensitivity.

Belov ME, Nikolaev EN, Anderson GA, Auberry KJ, Harkewicz R, Smith RD.

J Am Soc Mass Spectrom. 2001 Jan;12(1):38-48.

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