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Items: 10

1.

An analysis pipeline for the inference of protein-protein interaction networks.

Taylor RC, Singhal M, Daly DS, Gilmore J, Cannon WR, Domico K, White AM, Auberry DL, Auberry KJ, Hooker BS, Hurst G, McDermott JE, McDonald WH, Pelletier DA, Schmoyer D, Wiley HS.

Int J Data Min Bioinform. 2009;3(4):409-30.

PMID:
20052905
2.

A general system for studying protein-protein interactions in Gram-negative bacteria.

Pelletier DA, Hurst GB, Foote LJ, Lankford PK, McKeown CK, Lu TY, Schmoyer DD, Shah MB, Hervey WJ 4th, McDonald WH, Hooker BS, Cannon WR, Daly DS, Gilmore JM, Wiley HS, Auberry DL, Wang Y, Larimer FW, Kennel SJ, Doktycz MJ, Morrell-Falvey JL, Owens ET, Buchanan MV.

J Proteome Res. 2008 Aug;7(8):3319-28. doi: 10.1021/pr8001832. Epub 2008 Jul 1.

PMID:
18590317
3.

A Bayesian estimator of protein-protein association probabilities.

Gilmore JM, Auberry DL, Sharp JL, White AM, Anderson KK, Daly DS.

Bioinformatics. 2008 Jul 1;24(13):1554-5. doi: 10.1093/bioinformatics/btn238. Epub 2008 May 22.

PMID:
18499697
4.

Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.

Sharp JL, Anderson KK, Hurst GB, Daly DS, Pelletier DA, Cannon WR, Auberry DL, Schmoyer DD, McDonald WH, White AM, Hooker BS, Victry KD, Buchanan MV, Kery V, Wiley HS.

J Proteome Res. 2007 Sep;6(9):3788-95. Epub 2007 Aug 11.

PMID:
17691832
5.

Automated purification of recombinant proteins: combining high-throughput with high yield.

Lin CT, Moore PA, Auberry DL, Landorf EV, Peppler T, Victry KD, Collart FR, Kery V.

Protein Expr Purif. 2006 May;47(1):16-24. Epub 2005 Dec 15.

PMID:
16406573
6.

Simple protein complex purification and identification method for high-throughput mapping of protein interaction networks.

Markillie LM, Lin CT, Adkins JN, Auberry DL, Hill EA, Hooker BS, Moore PA, Moore RJ, Shi L, Wiley HS, Kery V.

J Proteome Res. 2005 Mar-Apr;4(2):268-74.

PMID:
15822902
7.

A proteomic approach to characterize protein shedding.

Ahram M, Adkins JN, Auberry DL, Wunschel DS, Springer DL.

Proteomics. 2005 Jan;5(1):123-31.

PMID:
15672459
8.

Characterization of plasma membrane proteins from ovarian cancer cells using mass spectrometry.

Springer DL, Auberry DL, Ahram M, Adkins JN, Feldhaus JM, Wahl JH, Wunschel DS, Rodland KD.

Dis Markers. 2003-2004;19(4-5):219-28.

9.

High-efficiency on-line solid-phase extraction coupling to 15-150-microm-i.d. column liquid chromatography for proteomic analysis.

Shen Y, Moore RJ, Zhao R, Blonder J, Auberry DL, Masselon C, Pasa-Tolić L, Hixson KK, Auberry KJ, Smith RD.

Anal Chem. 2003 Jul 15;75(14):3596-3605.

PMID:
14570215
10.

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.

Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD.

Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11049-54. Epub 2002 Aug 12.

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