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Items: 1 to 50 of 86

1.

A comprehensive method protocol for annotation and integrated functional understanding of lncRNAs.

Kunz M, Wolf B, Fuchs M, Christoph J, Xiao K, Thum T, Atlan D, Prokosch HU, Dandekar T.

Brief Bioinform. 2019 Oct 3. pii: bbz066. doi: 10.1093/bib/bbz066. [Epub ahead of print]

PMID:
31578571
2.

Non-Coding RNAs in Lung Cancer: Contribution of Bioinformatics Analysis to the Development of Non-Invasive Diagnostic Tools.

Kunz M, Wolf B, Schulze H, Atlan D, Walles T, Walles H, Dandekar T.

Genes (Basel). 2016 Dec 26;8(1). pii: E8. doi: 10.3390/genes8010008. Review.

3.

Cafe Variome: general-purpose software for making genotype-phenotype data discoverable in restricted or open access contexts.

Lancaster O, Beck T, Atlan D, Swertz M, Thangavelu D, Veal C, Dalgleish R, Brookes AJ.

Hum Mutat. 2015 Oct;36(10):957-64. doi: 10.1002/humu.22841. Epub 2015 Aug 25.

PMID:
26224250
4.

Correction for Hervet et al., protein kinase LegK2 is a type IV secretion system effector involved in endoplasmic reticulum recruitment and intracellular replication of Legionella pneumophila.

Hervet E, Charpentier X, Vianney A, Lazzaroni JC, Gilbert C, Atlan D, Doublet P.

Infect Immun. 2015 Aug;83(8):3338. doi: 10.1128/IAI.00587-15. No abstract available.

5.

DNAseq Workflow in a Diagnostic Context and an Example of a User Friendly Implementation.

Wolf B, Kuonen P, Dandekar T, Atlan D.

Biomed Res Int. 2015;2015:403497. doi: 10.1155/2015/403497. Epub 2015 Jun 7.

6.

A tyrosine phosphorylation switch controls the interaction between the transmembrane modulator protein Wzd and the tyrosine kinase Wze of Lactobacillus rhamnosus.

Kang HJ, Gilbert C, Badeaux F, Atlan D, LaPointe G.

BMC Microbiol. 2015 Feb 21;15:40. doi: 10.1186/s12866-015-0371-2.

7.

Molecular diversity and high virulence of Legionella pneumophila strains isolated from biofilms developed within a warm spring of a thermal spa.

Chaabna Z, Forey F, Reyrolle M, Jarraud S, Atlan D, Fontvieille D, Gilbert C.

BMC Microbiol. 2013 Jan 28;13:17. doi: 10.1186/1471-2180-13-17.

8.

VarioML framework for comprehensive variation data representation and exchange.

Byrne M, Fokkema IF, Lancaster O, Adamusiak T, Ahonen-Bishopp A, Atlan D, Béroud C, Cornell M, Dalgleish R, Devereau A, Patrinos GP, Swertz MA, Taschner PE, Thorisson GA, Vihinen M, Brookes AJ, Muilu J.

BMC Bioinformatics. 2012 Oct 3;13:254. doi: 10.1186/1471-2105-13-254.

9.

Micriamoeba tesseris nov. gen. nov. sp.: a new taxon of free-living small-sized Amoebae non-permissive to virulent Legionellae.

Atlan D, Coupat-Goutaland B, Risler A, Reyrolle M, Souchon M, Briolay J, Jarraud S, Doublet P, Pélandakis M.

Protist. 2012 Nov;163(6):888-902. doi: 10.1016/j.protis.2012.04.006. Epub 2012 Jun 5.

PMID:
22677099
10.

Bactericidal efficiency and mode of action: a comparative study of photochemistry and photocatalysis.

Pigeot-Rémy S, Simonet F, Atlan D, Lazzaroni JC, Guillard C.

Water Res. 2012 Jun 15;46(10):3208-18. doi: 10.1016/j.watres.2012.03.019. Epub 2012 Mar 17.

PMID:
22503496
11.

The atypical two-component sensor kinase Lpl0330 from Legionella pneumophila controls the bifunctional diguanylate cyclase-phosphodiesterase Lpl0329 to modulate bis-(3'-5')-cyclic dimeric GMP synthesis.

Levet-Paulo M, Lazzaroni JC, Gilbert C, Atlan D, Doublet P, Vianney A.

J Biol Chem. 2011 Sep 9;286(36):31136-44. doi: 10.1074/jbc.M111.231340. Epub 2011 Jul 13.

12.

The peptide transport system Opt is involved in both nutrition and environmental sensing during growth of Lactococcus lactis in milk.

Lamarque M, Aubel D, Piard JC, Gilbert C, Juillard V, Atlan D.

Microbiology. 2011 Jun;157(Pt 6):1612-9. doi: 10.1099/mic.0.048173-0. Epub 2011 Mar 10.

PMID:
21393368
13.

Original features of cell-envelope proteinases of Lactobacillus helveticus. A review.

Sadat-Mekmene L, Genay M, Atlan D, Lortal S, Gagnaire V.

Int J Food Microbiol. 2011 Mar 15;146(1):1-13. doi: 10.1016/j.ijfoodmicro.2011.01.039. Epub 2011 Feb 2. Review.

PMID:
21354644
14.

Protein kinase LegK2 is a type IV secretion system effector involved in endoplasmic reticulum recruitment and intracellular replication of Legionella pneumophila.

Hervet E, Charpentier X, Vianney A, Lazzaroni JC, Gilbert C, Atlan D, Doublet P.

Infect Immun. 2011 May;79(5):1936-50. doi: 10.1128/IAI.00805-10. Epub 2011 Feb 14. Erratum in: Infect Immun. 2015 Aug;83(8):3338.

15.

The TolC protein of Legionella pneumophila plays a major role in multi-drug resistance and the early steps of host invasion.

Ferhat M, Atlan D, Vianney A, Lazzaroni JC, Doublet P, Gilbert C.

PLoS One. 2009 Nov 4;4(11):e7732. doi: 10.1371/journal.pone.0007732.

16.

Atypical citrate-fermenting Lactococcus lactis strains isolated from dromedary's milk.

Drici H, Gilbert C, Kihal M, Atlan D.

J Appl Microbiol. 2010 Feb;108(2):647-57. doi: 10.1111/j.1365-2672.2009.04459.x. Epub 2009 Jul 7.

17.

Peptidases specific for proline-containing peptides and their unusual peptide-dependent regulation in Oenococcus oeni.

Ritt JF, Remize F, Grandvalet C, Guzzo J, Atlan D, Alexandre H.

J Appl Microbiol. 2009 Mar;106(3):801-13. doi: 10.1111/j.1365-2672.2008.04032.x.

18.

Characterization and site-directed mutagenesis of Wzb, an O-phosphatase from Lactobacillus rhamnosus.

LaPointe G, Atlan D, Gilbert C.

BMC Biochem. 2008 Apr 3;9:10. doi: 10.1186/1471-2091-9-10.

19.

Growth-phase-dependent mobility of the lvh-encoding region in Legionella pneumophila strain Paris.

Doléans-Jordheim A, Akermi M, Ginevra C, Cazalet C, Kay E, Schneider D, Buchrieser C, Atlan D, Vandenesch F, Etienne J, Jarraud S.

Microbiology. 2006 Dec;152(Pt 12):3561-8.

PMID:
17159208
20.

Comparative analysis of the exopolysaccharide biosynthesis gene clusters from four strains of Lactobacillus rhamnosus.

Péant B, LaPointe G, Gilbert C, Atlan D, Ward P, Roy D.

Microbiology. 2005 Jun;151(Pt 6):1839-51.

PMID:
15941992
21.

Postoperative chemoradiotherapy after surgical resection of gastric adenocarcinoma: can LV5FU2 reduce the toxic effects of the MacDonald regimen? A report on 23 patients.

Dahan L, Atlan D, Bouché O, Mitry E, Ries P, Artru P, Richard K, Lledo G, Nguyen T, Rougier P, Seitz JF.

Gastroenterol Clin Biol. 2005 Jan;29(1):11-5.

22.

Impact of EGFR expression on colorectal cancer patient prognosis and survival.

Spano JP, Lagorce C, Atlan D, Milano G, Domont J, Benamouzig R, Attar A, Benichou J, Martin A, Morere JF, Raphael M, Penault-Llorca F, Breau JL, Fagard R, Khayat D, Wind P.

Ann Oncol. 2005 Jan;16(1):102-8.

PMID:
15598946
23.

A multifunction ABC transporter (Opt) contributes to diversity of peptide uptake specificity within the genus Lactococcus.

Lamarque M, Charbonnel P, Aubel D, Piard JC, Atlan D, Juillard V.

J Bacteriol. 2004 Oct;186(19):6492-500.

24.

[Long term results of exclusive chemotherapy for glottic squamous cell carcinoma complete clinical responders after induction chemotherapy].

Vachin F, Hans S, Atlan D, Brasnu D, Menard M, Laccourreye O.

Ann Otolaryngol Chir Cervicofac. 2004 Jun;121(3):140-7. French.

PMID:
15223999
25.

Nasopharyngeal carcinomas: an update.

Spano JP, Busson P, Atlan D, Bourhis J, Pignon JP, Esteban C, Armand JP.

Eur J Cancer. 2003 Oct;39(15):2121-35. Review.

PMID:
14522369
26.

[Volume-effect and radiotherapy [II]. Part II: volume-effect and normal tissue].

Huchet A, Caudry M, Belkacémi Y, Trouette R, Vendrely V, Causse N, Récaldini L, Atlan D, Maire JP.

Cancer Radiother. 2003 Oct;7(5):353-62. Review. French.

PMID:
14522356
28.

Preoperative concurrent chemoradiotherapy in locally advanced rectal cancer with high-dose radiation and oxaliplatin-containing regimen: the Lyon R0-04 phase II trial.

Gérard JP, Chapet O, Nemoz C, Romestaing P, Mornex F, Coquard R, Barbet N, Atlan D, Adeleine P, Freyer G.

J Clin Oncol. 2003 Mar 15;21(6):1119-24.

PMID:
12637479
29.

Diversity of oligopeptide transport specificity in Lactococcus lactis species. A tool to unravel the role of OppA in uptake specificity.

Charbonnel P, Lamarque M, Piard JC, Gilbert C, Juillard V, Atlan D.

J Biol Chem. 2003 Apr 25;278(17):14832-40. Epub 2003 Feb 16.

30.

Operable Stages IB and II cervical carcinomas: a retrospective study comparing preoperative uterovaginal brachytherapy and postoperative radiotherapy.

Atlan D, Touboul E, Deniaud-Alexandre E, Lefranc JP, Antoine JM, Jannet D, Lhuillier P, Uzan M, Huart J, Genestie C, Antoine M, Jamali M, Ganansia V, Milliez J, Uzan S, Blondon J.

Int J Radiat Oncol Biol Phys. 2002 Nov 1;54(3):780-93.

PMID:
12377330
31.

[Operable stage IB and II cancer of the uterine neck: retrospective comparison between preoperative utero-vaginal curietherapy and initial surgery followed by radiotherapy].

Atlan D, Touboul E, Deniaud-Alexandre E, Lefranc JP, Ganansia V, Bernard A, Antoine JM, Jannet D, Lhuillier PE, Uzan M, Genestie C, Antoine M, Jamali M, Milliez J, Uzan S, Blondon J.

Cancer Radiother. 2002 Jun;6(4):217-37. French.

PMID:
12224488
35.

[Interest of a combined modality treatment in unresectable gallbladder carcinoma. A case report].

Desramé J, Mitry E, Lecomte T, Atlan D, Vaillant JN, Julié C, Nordlinger B, Penna C, Rougier P.

Gastroenterol Clin Biol. 2001 Nov;25(11):1034-6. French. No abstract available.

36.
37.

Autoregulation of the biosynthesis of the CcpA-like protein, PepR1, in Lactobacillus delbrueckii subsp bulgaricus.

Morel F, Lamarque M, Bissardon I, Atlan D, Galinier A.

J Mol Microbiol Biotechnol. 2001 Jan;3(1):63-6.

PMID:
11200229
38.
39.

[Cancer of the canal anal: literature review].

Spano JP, Atlan D, Sibony M, Scalliet P.

Bull Cancer. 2000 Sep;Suppl 4:33-46. Review. French. No abstract available.

40.

[Rectal cancers: an update].

Atlan D, Fabre E, Maingon P, Penna C, Rougier P.

Bull Cancer. 2000 Sep;Suppl 4:21-32. Review. French. No abstract available.

PMID:
11072222
41.

[Cancer of the colon: an update].

Fabre E, Spano JP, Atlan D, Braud AC, Mitry E, Panis Y, Faivre J.

Bull Cancer. 2000 Sep;Suppl 4:5-20. Review. French. No abstract available.

PMID:
11072221
42.

[Cancer of the canal anal: literature review]

Spano JP, Atlan D, Sibony M, Scalliet P.

Bull Cancer. 2000 Sep;FMC N:33-46. French. No abstract available.

43.

[Rectal cancers: an update]

Atlan D, Fabre E, Maingon P, Penna C, Rougier P.

Bull Cancer. 2000 Sep;FMC N:21-32. French. No abstract available.

44.

[Cancer of the colon: an update]

Fabre E, Spano JP, Atlan D, Braud AC, Mitry E, Panis Y, Faivre J.

Bull Cancer. 2000 Sep;FMC N:5-20. French. No abstract available.

PMID:
11038419
45.

Linac radiosurgery for cerebral arteriovenous malformations: results in 169 patients.

Schlienger M, Atlan D, Lefkopoulos D, Merienne L, Touboul E, Missir O, Nataf F, Mammar H, Platoni K, Grandjean P, Foulquier JN, Huart J, Oppenheim C, Meder JF, Houdart E, Merland JJ.

Int J Radiat Oncol Biol Phys. 2000 Mar 15;46(5):1135-42.

PMID:
10725623
46.

Characterization of a prolidase from Lactobacillus delbrueckii subsp. bulgaricus CNRZ 397 with an unusual regulation of biosynthesis.

Morel F, Frot-Coutaz J, Aubel D, Portalier R, Atlan D.

Microbiology. 1999 Feb;145 ( Pt 2):437-46.

PMID:
10075426
47.

The prolyl aminopeptidase from Lactobacillus delbrueckii subsp. bulgaricus belongs to the alpha/beta hydrolase fold family.

Morel F, Gilbert C, Geourjon C, Frot-Coutaz J, Portalier R, Atlan D.

Biochim Biophys Acta. 1999 Jan 11;1429(2):501-5.

PMID:
9989236
48.

[Carcinoma of the endometrium: review of the literature].

Germann N, Atlan D, Haie-Meder C.

Bull Cancer. 1998 Nov;Suppl 2:37-45. Review. French.

PMID:
9917551
49.

A new cell surface proteinase: sequencing and analysis of the prtB gene from Lactobacillus delbruekii subsp. bulgaricus.

Gilbert C, Atlan D, Blanc B, Portailer R, Germond JE, Lapierre L, Mollet B.

J Bacteriol. 1996 Jun;178(11):3059-65.

50.

Tamoxifen for the treatment of metastatic inflammatory breast carcinoma.

Atlan D, Chevallier B, Sheng RG.

Am J Clin Oncol. 1995 Feb;18(1):74-7.

PMID:
7531391

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