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Items: 1 to 50 of 58

1.

Soil strength influences wheat root interactions with soil macropores.

Atkinson JA, Hawkesford MJ, Whalley WR, Zhou H, Mooney SJ.

Plant Cell Environ. 2019 Oct 10. doi: 10.1111/pce.13659. [Epub ahead of print]

PMID:
31600410
2.

Author Correction: Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation.

Mohammed U, Caine RS, Atkinson JA, Harrison EL, Wells D, Chater CC, Gray JE, Swarup R, Murchie EH.

Sci Rep. 2019 Oct 10;9(1):14827. doi: 10.1038/s41598-019-51402-7.

3.

High throughput procedure utilising chlorophyll fluorescence imaging to phenotype dynamic photosynthesis and photoprotection in leaves under controlled gaseous conditions.

McAusland L, Atkinson JA, Lawson T, Murchie EH.

Plant Methods. 2019 Sep 18;15:109. doi: 10.1186/s13007-019-0485-x. eCollection 2019.

4.

The Impact of Reducing Psychiatric Beds on Suicide Rates.

Atkinson JA, Page A, Skinner A, Heffernan M, Prodan A, Hickie IB.

Front Psychiatry. 2019 Jul 2;10:448. doi: 10.3389/fpsyt.2019.00448. eCollection 2019.

5.

Turning conceptual systems maps into dynamic simulation models: An Australian case study for diabetes in pregnancy.

Freebairn L, Atkinson JA, Osgood ND, Kelly PM, McDonnell G, Rychetnik L.

PLoS One. 2019 Jun 27;14(6):e0218875. doi: 10.1371/journal.pone.0218875. eCollection 2019.

6.

Resolving the paradox of increased mental health expenditure and stable prevalence.

Meadows GN, Prodan A, Patten S, Shawyer F, Francis S, Enticott J, Rosenberg S, Atkinson JA, Fossey E, Kakuma R.

Aust N Z J Psychiatry. 2019 Sep;53(9):844-850. doi: 10.1177/0004867419857821. Epub 2019 Jun 25.

7.

Demystifying roots: A need for clarification and extended concepts in root phenotyping.

Lobet G, Paez-Garcia A, Schneider H, Junker A, Atkinson JA, Tracy S.

Plant Sci. 2019 May;282:11-13. doi: 10.1016/j.plantsci.2018.09.015. Epub 2018 Sep 25. Review.

PMID:
31003606
8.

Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation.

Mohammed U, Caine RS, Atkinson JA, Harrison EL, Wells D, Chater CC, Gray JE, Swarup R, Murchie EH.

Sci Rep. 2019 Apr 3;9(1):5584. doi: 10.1038/s41598-019-41922-7. Erratum in: Sci Rep. 2019 Oct 10;9(1):14827.

9.

Improving the quality of healthcare: a cross-sectional study of the features of successful clinical networks.

Haines MM, Brown B, D'Este CA, Yano EM, Craig JC, Middleton S, Castaldi PA, Pollock CA, Needham K, Watt WH, Elliott EJ, Scott A, Dominello A, Klineberg E, Atkinson JA, Paul C, Redman S.

Public Health Res Pract. 2018 Dec 6;28(4). pii: 28011803. doi: 10.17061/phrp28011803.

10.

Decision makers' experience of participatory dynamic simulation modelling: methods for public health policy.

Freebairn L, Atkinson JA, Kelly PM, McDonnell G, Rychetnik L.

BMC Med Inform Decis Mak. 2018 Dec 12;18(1):131. doi: 10.1186/s12911-018-0707-6.

11.

The impact of strengthening mental health services to prevent suicidal behaviour.

Atkinson JA, Page A, Heffernan M, McDonnell G, Prodan A, Campos B, Meadows G, Hickie IB.

Aust N Z J Psychiatry. 2019 Jul;53(7):642-650. doi: 10.1177/0004867418817381. Epub 2018 Dec 12.

PMID:
30541332
12.

Erratum to: Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies.

Atkinson JA, Lobet G, Noll M, Meyer PE, Griffiths M, Wells DM.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy043. No abstract available.

13.

Erratum to: Deep machine learning provides state-of-the-art performance in image-based plant phenotyping.

Pound MP, Atkinson JA, Townsend AJ, Wilson MH, Griffiths M, Jackson AS, Bulat A, Tzimiropoulos G, Wells DM, Murchie EH, Pridmore TP, French AP.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy042. No abstract available.

14.

Uncovering the hidden half of plants using new advances in root phenotyping.

Atkinson JA, Pound MP, Bennett MJ, Wells DM.

Curr Opin Biotechnol. 2019 Feb;55:1-8. doi: 10.1016/j.copbio.2018.06.002. Epub 2018 Jul 19. Review.

15.

A decision support tool to inform local suicide prevention activity in Greater Western Sydney (Australia).

Page A, Atkinson JA, Campos W, Heffernan M, Ferdousi S, Power A, McDonnell G, Maranan N, Hickie I.

Aust N Z J Psychiatry. 2018 Oct;52(10):983-993. doi: 10.1177/0004867418767315. Epub 2018 Apr 19.

PMID:
29671335
16.

Systems modelling tools to support policy and planning.

Atkinson JA, Page A, Prodan A, McDonnell G, Osgood N.

Lancet. 2018 Mar 24;391(10126):1158-1159. doi: 10.1016/S0140-6736(18)30302-7. No abstract available.

PMID:
29595488
17.

Impacts of licensed premises trading hour policies on alcohol-related harms.

Atkinson JA, Prodan A, Livingston M, Knowles D, O'Donnell E, Room R, Indig D, Page A, McDonnell G, Wiggers J.

Addiction. 2018 Jul;113(7):1244-1251. doi: 10.1111/add.14178. Epub 2018 Mar 2.

18.

Static metrics of impact for a dynamic problem: The need for smarter tools to guide suicide prevention planning and investment.

Page A, Atkinson JA, Heffernan M, McDonnell G, Prodan A, Osgood N, Hickie I.

Aust N Z J Psychiatry. 2018 Jul;52(7):660-667. doi: 10.1177/0004867417752866. Epub 2018 Jan 23.

PMID:
29359569
19.

Harnessing advances in computer simulation to inform policy and planning to reduce alcohol-related harms.

Atkinson JA, Knowles D, Wiggers J, Livingston M, Room R, Prodan A, McDonnell G, O'Donnell E, Jones S, Haber PS, Muscatello D, Ezard N, Phung N, Freebairn L, Indig D, Rychetnik L, Ananthapavan J, Wutzke S; alcohol modelling consortium.

Int J Public Health. 2018 May;63(4):537-546. doi: 10.1007/s00038-017-1041-y. Epub 2017 Oct 19.

20.

Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency.

Kenobi K, Atkinson JA, Wells DM, Gaju O, De Silva JG, Foulkes MJ, Dryden IL, Wood ATA, Bennett MJ.

J Exp Bot. 2017 Oct 13;68(17):4969-4981. doi: 10.1093/jxb/erx300.

21.

An Updated Protocol for High Throughput Plant Tissue Sectioning.

Atkinson JA, Wells DM.

Front Plant Sci. 2017 Oct 4;8:1721. doi: 10.3389/fpls.2017.01721. eCollection 2017.

22.

Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies.

Atkinson JA, Lobet G, Noll M, Meyer PE, Griffiths M, Wells DM.

Gigascience. 2017 Oct 1;6(10):1-7. doi: 10.1093/gigascience/gix084. Erratum in: Gigascience. 2018 Jul 1;7(7):.

23.

Deep machine learning provides state-of-the-art performance in image-based plant phenotyping.

Pound MP, Atkinson JA, Townsend AJ, Wilson MH, Griffiths M, Jackson AS, Bulat A, Tzimiropoulos G, Wells DM, Murchie EH, Pridmore TP, French AP.

Gigascience. 2017 Oct 1;6(10):1-10. doi: 10.1093/gigascience/gix083. Erratum in: Gigascience. 2018 Jul 1;7(7):.

24.

Knowledge mobilisation for policy development: implementing systems approaches through participatory dynamic simulation modelling.

Freebairn L, Rychetnik L, Atkinson JA, Kelly P, McDonnell G, Roberts N, Whittall C, Redman S.

Health Res Policy Syst. 2017 Oct 2;15(1):83. doi: 10.1186/s12961-017-0245-1.

25.

A decision-support tool to inform Australian strategies for preventing suicide and suicidal behaviour.

Page A, Atkinson JA, Heffernan M, McDonnell G, Hickie I.

Public Health Res Pract. 2017 Apr 27;27(2). pii: 2721717. doi: 10.17061/phrp2721717.

26.

Participatory simulation modelling to inform public health policy and practice: Rethinking the evidence hierarchies.

O'Donnell E, Atkinson JA, Freebairn L, Rychetnik L.

J Public Health Policy. 2017 May;38(2):203-215. doi: 10.1057/s41271-016-0061-9.

PMID:
28386099
27.

Dynamic simulation modelling of policy responses to reduce alcohol-related harms: rationale and procedure for a participatory approach.

Atkinson JA, O'Donnell E, Wiggers J, McDonnell G, Mitchell J, Freebairn L, Indig D, Rychetnik L.

Public Health Res Pract. 2017 Feb 15;27(1). pii: 2711707. doi: 10.17061/phrp2711707.

28.

Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots.

Passot S, Gnacko F, Moukouanga D, Lucas M, Guyomarc'h S, Ortega BM, Atkinson JA, Belko MN, Bennett MJ, Gantet P, Wells DM, Guédon Y, Vigouroux Y, Verdeil JL, Muller B, Laplaze L.

Front Plant Sci. 2016 Jun 13;7:829. doi: 10.3389/fpls.2016.00829. eCollection 2016.

29.

A cluster-randomised controlled trial integrating a community-based water, sanitation and hygiene programme, with mass distribution of albendazole to reduce intestinal parasites in Timor-Leste: the WASH for WORMS research protocol.

Nery SV, McCarthy JS, Traub R, Andrews RM, Black J, Gray D, Weking E, Atkinson JA, Campbell S, Francis N, Vallely A, Williams G, Clements A.

BMJ Open. 2015 Dec 30;5(12):e009293. doi: 10.1136/bmjopen-2015-009293.

30.

Applications of system dynamics modelling to support health policy.

Atkinson JA, Wells R, Page A, Dominello A, Haines M, Wilson A.

Public Health Res Pract. 2015 Jul 9;25(3):e2531531. doi: 10.17061/phrp2531531. Review.

31.

A modelling tool for policy analysis to support the design of efficient and effective policy responses for complex public health problems.

Atkinson JA, Page A, Wells R, Milat A, Wilson A.

Implement Sci. 2015 Mar 3;10:26. doi: 10.1186/s13012-015-0221-5.

32.

Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat.

Atkinson JA, Wingen LU, Griffiths M, Pound MP, Gaju O, Foulkes MJ, Le Gouis J, Griffiths S, Bennett MJ, King J, Wells DM.

J Exp Bot. 2015 Apr;66(8):2283-92. doi: 10.1093/jxb/erv006. Epub 2015 Mar 4.

33.

The influence of demographics and working conditions on self-reported injuries among Latino day laborers.

Fernández-Esquer ME, Fernández-Espada N, Atkinson JA, Montano CF.

Int J Occup Environ Health. 2015;21(1):5-13. doi: 10.1179/2049396714Y.0000000083. Epub 2014 Oct 8.

34.

Impact of "Grain to Green" Programme on echinococcosis infection in Ningxia Hui Autonomous Region of China.

Cleary E, Barnes TS, Xu Y, Zhao H, Clements AC, Gray DJ, McManus DP, Atkinson JA, Williams GM, Yang Y.

Vet Parasitol. 2014 Oct 15;205(3-4):523-31. doi: 10.1016/j.vetpar.2014.08.023. Epub 2014 Sep 10.

PMID:
25283092
35.

Branching out in roots: uncovering form, function, and regulation.

Atkinson JA, Rasmussen A, Traini R, Voß U, Sturrock C, Mooney SJ, Wells DM, Bennett MJ.

Plant Physiol. 2014 Oct;166(2):538-50. doi: 10.1104/pp.114.245423. Epub 2014 Aug 18. Review.

36.

Water, Sanitation, and Hygiene (WASH): a critical component for sustainable soil-transmitted helminth and schistosomiasis control.

Campbell SJ, Savage GB, Gray DJ, Atkinson JA, Soares Magalhães RJ, Nery SV, McCarthy JS, Velleman Y, Wicken JH, Traub RJ, Williams GM, Andrews RM, Clements AC.

PLoS Negl Trop Dis. 2014 Apr 10;8(4):e2651. doi: 10.1371/journal.pntd.0002651. eCollection 2014 Apr. No abstract available.

37.

Plasmodium vivax malaria incidence over time and its association with temperature and rainfall in four counties of Yunnan Province, China.

Wardrop NA, Barnett AG, Atkinson JA, Clements AC.

Malar J. 2013 Dec 18;12:452. doi: 10.1186/1475-2875-12-452.

38.

Synthesising 30 years of mathematical modelling of Echinococcus transmission.

Atkinson JA, Williams GM, Yakob L, Clements AC, Barnes TS, McManus DP, Yang YR, Gray DJ.

PLoS Negl Trop Dis. 2013 Aug 29;7(8):e2386. doi: 10.1371/journal.pntd.0002386. eCollection 2013. Review.

39.

RootNav: navigating images of complex root architectures.

Pound MP, French AP, Atkinson JA, Wells DM, Bennett MJ, Pridmore T.

Plant Physiol. 2013 Aug;162(4):1802-14. doi: 10.1104/pp.113.221531. Epub 2013 Jun 13.

40.

Environmental changes impacting Echinococcus transmission: research to support predictive surveillance and control.

Atkinson JA, Gray DJ, Clements AC, Barnes TS, McManus DP, Yang YR.

Glob Chang Biol. 2013 Mar;19(3):677-88. doi: 10.1111/gcb.12088. Epub 2012 Dec 31. Review.

PMID:
23504826
41.

Feasibility and acceptability of insecticide-treated plastic sheeting (ITPS) for vector control in Papua New Guinea.

Pulford J, Tandrapah A, Atkinson JA, Kaupa B, Russell T, Hetzel MW.

Malar J. 2012 Oct 9;11:342. doi: 10.1186/1475-2875-11-342.

42.

Impact of anthropogenic and natural environmental changes on Echinococcus transmission in Ningxia Hui Autonomous Region, the People's Republic of China.

Yang YR, Clements AC, Gray DJ, Atkinson JA, Williams GM, Barnes TS, McManus DP.

Parasit Vectors. 2012 Jul 24;5:146. doi: 10.1186/1756-3305-5-146. Review.

43.

Operational research to inform a sub-national surveillance intervention for malaria elimination in Solomon Islands.

Atkinson JA, Johnson ML, Wijesinghe R, Bobogare A, Losi L, O'Sullivan M, Yamaguchi Y, Kenilorea G, Vallely A, Cheng Q, Ebringer A, Bain L, Gray K, Harris I, Whittaker M, Reid H, Clements A, Shanks D.

Malar J. 2012 Mar 30;11:101. doi: 10.1186/1475-2875-11-101.

44.

Malaria elimination in Isabel Province, Solomon Islands: establishing a surveillance-response system to prevent introduction and reintroduction of malaria.

O'Sullivan M, Kenilorea G, Yamaguchi Y, Bobogare A, Losi L, Atkinson JA, Vallely A, Whittaker M, Tanner M, Wijesinghe R.

Malar J. 2011 Aug 11;10:235. doi: 10.1186/1475-2875-10-235.

45.

The architecture and effect of participation: a systematic review of community participation for communicable disease control and elimination. Implications for malaria elimination.

Atkinson JA, Vallely A, Fitzgerald L, Whittaker M, Tanner M.

Malar J. 2011 Aug 4;10:225. doi: 10.1186/1475-2875-10-225. Review.

46.

Community participation for malaria elimination in Tafea Province, Vanuatu: part II. Social and cultural aspects of treatment-seeking behaviour.

Tynan A, Atkinson JA, Toaliu H, Taleo G, Fitzgerald L, Whittaker M, Riley I, Schubert M, Vallely A.

Malar J. 2011 Jul 26;10:204. doi: 10.1186/1475-2875-10-204.

47.

Exploring provider and community responses to the new malaria diagnostic and treatment regime in Solomon Islands.

Wijesinghe RS, Atkinson JA, Bobogare A, Wini L, Whittaker M.

Malar J. 2011 Jan 10;10:3. doi: 10.1186/1475-2875-10-3.

48.

Community participation for malaria elimination in Tafea Province, Vanuatu: Part I. Maintaining motivation for prevention practices in the context of disappearing disease.

Atkinson JA, Fitzgerald L, Toaliu H, Taleo G, Tynan A, Whittaker M, Riley I, Vallely A.

Malar J. 2010 Apr 12;9:93. doi: 10.1186/1475-2875-9-93.

49.

A cluster randomized controlled cross-over bed net acceptability and preference trial in Solomon Islands: community participation in shaping policy for malaria elimination.

Atkinson JA, Bobogare A, Vallely A, Boaz L, Kelly G, Basifiri W, Forsyth S, Baker P, Appleyard B, Toaliu H, Williams G.

Malar J. 2009 Dec 16;8:298. doi: 10.1186/1475-2875-8-298.

50.

A qualitative study on the acceptability and preference of three types of long-lasting insecticide-treated bed nets in Solomon Islands: implications for malaria elimination.

Atkinson JA, Bobogare A, Fitzgerald L, Boaz L, Appleyard B, Toaliu H, Vallely A.

Malar J. 2009 Jun 4;8:119. doi: 10.1186/1475-2875-8-119.

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