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Items: 13

1.

ANAT 2.0: reconstructing functional protein subnetworks.

Almozlino Y, Atias N, Silverbush D, Sharan R.

BMC Bioinformatics. 2017 Nov 16;18(1):495. doi: 10.1186/s12859-017-1932-1.

2.

Metabolic Network Prediction of Drug Side Effects.

Shaked I, Oberhardt MA, Atias N, Sharan R, Ruppin E.

Cell Syst. 2016 Mar 23;2(3):209-13. doi: 10.1016/j.cels.2016.03.001. Epub 2016 Mar 23.

3.

A network-based analysis of colon cancer splicing changes reveals a tumorigenesis-favoring regulatory pathway emanating from ELK1.

Hollander D, Donyo M, Atias N, Mekahel K, Melamed Z, Yannai S, Lev-Maor G, Shilo A, Schwartz S, Barshack I, Sharan R, Ast G.

Genome Res. 2016 Apr;26(4):541-53. doi: 10.1101/gr.193169.115. Epub 2016 Feb 9.

4.

Systematic identification and correction of annotation errors in the genetic interaction map of Saccharomyces cerevisiae.

Atias N, Kupiec M, Sharan R.

Nucleic Acids Res. 2016 Mar 18;44(5):e50. doi: 10.1093/nar/gkv1284. Epub 2015 Nov 23.

5.

Regulation of Sec16 levels and dynamics links proliferation and secretion.

Tillmann KD, Reiterer V, Baschieri F, Hoffmann J, Millarte V, Hauser MA, Mazza A, Atias N, Legler DF, Sharan R, Weiss M, Farhan H.

J Cell Sci. 2015 Feb 15;128(4):670-82. doi: 10.1242/jcs.157115. Epub 2014 Dec 19.

6.

Experimental design schemes for learning Boolean network models.

Atias N, Gershenzon M, Labazin K, Sharan R.

Bioinformatics. 2014 Sep 1;30(17):i445-52. doi: 10.1093/bioinformatics/btu451.

7.

Pathway-based analysis of genomic variation data.

Atias N, Istrail S, Sharan R.

Curr Opin Genet Dev. 2013 Dec;23(6):622-6. doi: 10.1016/j.gde.2013.09.002. Epub 2013 Oct 24. Review.

PMID:
24209906
8.

Alternative splicing regulates biogenesis of miRNAs located across exon-intron junctions.

Melamed Z, Levy A, Ashwal-Fluss R, Lev-Maor G, Mekahel K, Atias N, Gilad S, Sharan R, Levy C, Kadener S, Ast G.

Mol Cell. 2013 Jun 27;50(6):869-81. doi: 10.1016/j.molcel.2013.05.007. Epub 2013 Jun 6.

9.

A genetic screen for high copy number suppressors of the synthetic lethality between elg1Δ and srs2Δ in yeast.

Gazy I, Liefshitz B, Bronstein A, Parnas O, Atias N, Sharan R, Kupiec M.

G3 (Bethesda). 2013 May 20;3(5):917-26. doi: 10.1534/g3.113.005561.

10.

iPoint: an integer programming based algorithm for inferring protein subnetworks.

Atias N, Sharan R.

Mol Biosyst. 2013 Jul;9(7):1662-9. doi: 10.1039/c3mb25432a. Epub 2013 Feb 6.

PMID:
23385645
11.

ANAT: a tool for constructing and analyzing functional protein networks.

Yosef N, Zalckvar E, Rubinstein AD, Homilius M, Atias N, Vardi L, Berman I, Zur H, Kimchi A, Ruppin E, Sharan R.

Sci Signal. 2011 Oct 25;4(196):pl1. doi: 10.1126/scisignal.2001935.

PMID:
22028466
12.

An algorithmic framework for predicting side effects of drugs.

Atias N, Sharan R.

J Comput Biol. 2011 Mar;18(3):207-18. doi: 10.1089/cmb.2010.0255.

PMID:
21385029
13.

Combining drug and gene similarity measures for drug-target elucidation.

Perlman L, Gottlieb A, Atias N, Ruppin E, Sharan R.

J Comput Biol. 2011 Feb;18(2):133-45. doi: 10.1089/cmb.2010.0213.

PMID:
21314453

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