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Ultra-soft X-ray system for imaging the early cellular responses to X-ray induced DNA damage.
Kochan JA, van den Belt M, von der Lippe J, Desclos ECB, Steurer B, Hoebe RA, Scutigliani EM, Verhoeven J, Stap J, Bosch R, Rijpkema M, van Oven C, van Veen HA, Stellingwerf I, Vriend LEM, Marteijn JA, Aten JA, Krawczyk PM.
Nucleic Acids Res. 2019 Sep 26;47(17):e100. doi: 10.1093/nar/gkz609.
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In silico analysis of kinase expression identifies WEE1 as a gatekeeper against mitotic catastrophe in glioblastoma.
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An ultrasoft X-ray multi-microbeam irradiation system for studies of DNA damage responses by fixed- and live-cell fluorescence microscopy.
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Eur Biophys J. 2009 Jul;38(6):721-8. doi: 10.1007/s00249-009-0472-7. Epub 2009 Jun 3.
Heterochromatin protein 1 is recruited to various types of DNA damage.
Luijsterburg MS, Dinant C, Lans H, Stap J, Wiernasz E, Lagerwerf S, Warmerdam DO, Lindh M, Brink MC, Dobrucki JW, Aten JA, Fousteri MI, Jansen G, Dantuma NP, Vermeulen W, Mullenders LH, Houtsmuller AB, Verschure PJ, van Driel R.
J Cell Biol. 2009 May 18;185(4):577-86. doi: 10.1083/jcb.200810035.
Analysis of the mobility of DNA double-strand break-containing chromosome domains in living mammalian cells.
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Methods Mol Biol. 2008;463:309-20. doi: 10.1007/978-1-59745-406-3_19.
Advanced preparative techniques to establish probes for molecular cytogenetics.
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Curr Protoc Cytom. 2001 May;Chapter 8:Unit 8.6. doi: 10.1002/0471142956.cy0806s05.
Induction of linear tracks of DNA double-strand breaks by alpha-particle irradiation of cells.
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Polyglutamine expansion accelerates the dynamics of ataxin-1 and does not result in aggregate formation.
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DNA double-strand breaks are not sufficient to initiate recruitment of TRF2.
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Nat Genet. 2007 Jun;39(6):696-8; author reply 698-9. No abstract available.
Clustering of double strand break-containing chromosome domains is not inhibited by inactivation of major repair proteins.
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Mitochondrial PO2 measured by delayed fluorescence of endogenous protoporphyrin IX.
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Chromosomal organization: mingling with the neighbors.
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PLoS Biol. 2006 May;4(5):e155. Epub 2006 May 16. No abstract available.
Induction and detection of bystander effects after combined treatment of cells with 5-bromo-2'-deoxyurine, Hoechst 33 258 and ultraviolet A light.
Xiao Y, de Feyter E, Van Oven CH, Stap J, Hoebe R, Havenith S, Van Noorden CJ, Aten JA.
Int J Radiat Biol. 2004 Feb;80(2):105-14.
Dynamics of DNA double-strand breaks revealed by clustering of damaged chromosome domains.
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Science. 2004 Jan 2;303(5654):92-5.
Induction of chromosome aberrations in unirradiated chromatin after partial irradiation of a cell nucleus.
Ludwików G, Xiao Y, Hoebe RA, Franken NA, Darroudi F, Stap J, Van Oven CH, Van Noorden CJ, Aten JA.
Int J Radiat Biol. 2002 Apr;78(4):239-47.
A method for the selective irradiation of part of a genome.
Ludwików G, Hoebe RA, Franken NA, van Oven CH, Stap J, Aten JA.
Acta Oncol. 2000;39(6):693-8.
Fine structural in situ analysis of nascent DNA movement following DNA replication.
Jaunin F, Visser AE, Cmarko D, Aten JA, Fakan S.
Exp Cell Res. 2000 Nov 1;260(2):313-23.
High resolution analysis of interphase chromosome domains.
Visser AE, Jaunin F, Fakan S, Aten JA.
J Cell Sci. 2000 Jul;113 ( Pt 14):2585-93.
Coating of coverslips with glow-discharged carbon promotes cell attachment and spreading probably due to carboxylic groups.
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Cytometry. 2000 Apr 1;39(4):295-9.
Difference in sperm head volume as a theoretical basis for sorting X- and Y-bearing spermatozoa: potentials and limitations.
van Munster EB, Stap J, Hoebe RA, te Meerman GJ, Aten JA.
Theriogenology. 1999 Dec;52(8):1281-93.
Difference in volume of X- and Y-chromosome-bearing bovine sperm heads matches difference in DNA content.
Cytometry. 1999 Feb 1;35(2):125-8.
Chromosomes as well as chromosomal subdomains constitute distinct units in interphase nuclei.
Visser AE, Aten JA.
J Cell Sci. 1999 Oct;112 ( Pt 19):3353-60.
Measurement-based evaluation of optical pathlength distributions reconstructed from simulated differential interference contrast images.
Van Munster EB, Winter EK, Aten JA.
J Microsc. 1998 Aug;191(2):170-176.
Spatial distributions of early and late replicating chromatin in interphase chromosome territories.
Visser AE, Eils R, Jauch A, Little G, Bakker PJ, Cremer T, Aten JA.
Exp Cell Res. 1998 Sep 15;243(2):398-407.
A new immunocytochemical technique for ultrastructural analysis of DNA replication in proliferating cells after application of two halogenated deoxyuridines.
J Histochem Cytochem. 1998 Oct;46(10):1203-9.
Improving the resolution of cryopreserved X- and Y-sperm during DNA flow cytometric analysis with the addition of Percoll to quench the fluorescence of dead sperm.
Stap J, Hoebe RA, Merton JS, Haring RM, Bakker PJ, Aten JA.
J Anim Sci. 1998 Jul;76(7):1896-902.
Reconstruction of optical pathlength distributions from images obtained by a wide-field differential interference contrast microscope.
van Munster EB, van Vliet LJ, Aten JA.
J Microsc. 1997 Nov;188(Pt 2):149-57.
Mapping of DNA replication sites in situ by fluorescence microscopy.
van Driel R, Manders EM, de Jong L, Stap J, Aten JA.
Methods Cell Biol. 1998;53:455-69. Review. No abstract available.
Dynamic behavior of DNA replication domains.
Manders EM, Stap J, Strackee J, van Driel R, Aten JA.
Exp Cell Res. 1996 Aug 1;226(2):328-35.
Largest contour segmentation: a tool for the localization of spots in confocal images.
Manders EM, Hoebe R, Strackee J, Vossepoel AM, Aten JA.
Cytometry. 1996 Jan 1;23(1):15-21.
RNA polymerase II transcription is concentrated outside replication domains throughout S-phase.
Wansink DG, Manders EE, van der Kraan I, Aten JA, van Driel R, de Jong L.
J Cell Sci. 1994 Jun;107 ( Pt 6):1449-56.
Flow cytometric detection of chromosome abnormalities by measuring centromeric index, DNA content, and DNA base composition.
Rens W, Boschman GA, Hoovers JM, Manders EM, Slater RM, Stap J, Aten JA.
Anal Cell Pathol. 1994 May;6(4):359-75.
Slit-scanning technique using standard cell sorter instruments for analyzing and sorting nonacrocentric human chromosomes, including small ones.
Rens W, Van Oven CH, Stap J, Jakobs ME, Aten JA.
Cytometry. 1994 May 1;16(1):80-7.
Construction of mouse chromosome-specific DNA libraries and their use for the detection of X-ray-induced aberrations.
Boei JJ, Balajee AS, de Boer P, Rens W, Aten JA, Mullenders LH, Natarajan AT.
Int J Radiat Biol. 1994 May;65(5):583-90.
Application and detection of IdUrd and CldUrd as two independent cell-cycle markers.
Aten JA, Stap J, Hoebe R, Bakker PJ.
Methods Cell Biol. 1994;41:317-26. Review. No abstract available.
Time-optimized analysis of slit-scan chromosome profiles on a general-purpose personal computer.
Heilig R, Hausmann M, Rens W, Aten JA, Cremer C.
Comput Appl Biosci. 1993 Aug;9(4):381-5.
Effectiveness of pulse-shape criteria for the selection of dicentric chromosomes by slit-scan flow cytometry and sorting.
Rens W, Van Oven CH, Stap J, Aten JA.
Anal Cell Pathol. 1993 May;5(3):147-59.
Micronuclei expression in tumors as a test for radiation sensitivity.
Bakker PJ, Tukker LJ, Stap J, Veenhof CH, Aten JA.
Radiother Oncol. 1993 Jan;26(1):69-72.
Identification of a tumor marker chromosome by flow sorting, DNA amplification in vitro, and in situ hybridization of the amplified product.
Boschman GA, Buys CH, van der Veen AY, Rens W, Osinga J, Slater RM, Aten JA.
Genes Chromosomes Cancer. 1993 Jan;6(1):10-6.
Dynamics of three-dimensional replication patterns during the S-phase, analysed by double labelling of DNA and confocal microscopy.
Manders EM, Stap J, Brakenhoff GJ, van Driel R, Aten JA.
J Cell Sci. 1992 Nov;103 ( Pt 3):857-62.
Detection of recurrent chromosome abnormalities in Ewing's sarcoma and peripheral neuroectodermal tumor cells using bivariate flow karyotyping.
Boschman GA, Rens W, Manders EM, Slater RM, Versteeg R, Aten JA.
Genes Chromosomes Cancer. 1992 Nov;5(4):375-84.
DNA double labelling with IdUrd and CldUrd for spatial and temporal analysis of cell proliferation and DNA replication.
Aten JA, Bakker PJ, Stap J, Boschman GA, Veenhof CH.
Histochem J. 1992 May;24(5):251-9.
Semi-automated detection of aberrant chromosomes in bivariate flow karyotypes.
Boschman GA, Manders EM, Rens W, Slater R, Aten JA.
Cytometry. 1992;13(5):469-77.
Trichobilharzia ocellata in Lymnaea stagnalis: a flow cytometric approach to study its effects on hemocytes.
Amen RI, Aten JA, Baggen JM, Meuleman EA, de Lange-de Klerk ES, Sminia T.
J Invertebr Pathol. 1992 Jan;59(1):95-8.
Slit scan flow cytometry of isolated chromosomes following fluorescence hybridization: an approach of online screening for specific chromosomes and chromosome translocations.
Hausmann M, Dudin G, Aten JA, Heilig R, Diaz E, Cremer C.
Z Naturforsch C J Biosci. 1991 May-Jun;46(5-6):433-41.
Effect of aniosmotic media on the volume of the T-lymphocyte nucleus.
Hoekstra AG, Aten JA, Sloot PM.
Biophys J. 1991 Apr;59(4):765-74.
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