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Items: 1 to 50 of 92

1.

A novel N-terminal domain may dictate the glucose response of Mondo proteins.

McFerrin LG, Atchley WR.

PLoS One. 2012;7(4):e34803. doi: 10.1371/journal.pone.0034803. Epub 2012 Apr 10.

2.

Brain cancer prognosis: independent validation of a clinical bioinformatics approach.

Fronza R, Tramonti M, Atchley WR, Nardini C.

J Clin Bioinforma. 2012 Feb 1;2:2. doi: 10.1186/2043-9113-2-2.

3.

Phylogenetic analysis and classification of the fungal bHLH domain.

Sailsbery JK, Atchley WR, Dean RA.

Mol Biol Evol. 2012 May;29(5):1301-18. doi: 10.1093/molbev/msr288. Epub 2011 Nov 22.

4.

Evolution of the Max and Mlx networks in animals.

McFerrin LG, Atchley WR.

Genome Biol Evol. 2011;3:915-37. doi: 10.1093/gbe/evr082. Epub 2011 Aug 22.

5.

Retrospective. Walter M. Fitch (1929-2011).

Atchley WR.

Science. 2011 May 13;332(6031):804. doi: 10.1126/science.1207426. No abstract available.

PMID:
21566183
6.

Joint analysis of transcriptional and post- transcriptional brain tumor data: searching for emergent properties of cellular systems.

Fronza R, Tramonti M, Atchley WR, Nardini C.

BMC Bioinformatics. 2011 Mar 30;12:86. doi: 10.1186/1471-2105-12-86.

7.

Site-specific evolutionary rates in proteins are better modeled as non-independent and strictly relative.

Fernandes AD, Atchley WR.

Bioinformatics. 2008 Oct 1;24(19):2177-83. doi: 10.1093/bioinformatics/btn395. Epub 2008 Jul 28.

8.

Biochemical and functional evidence of p53 homology is inconsistent with molecular phylogenetics for distant sequences.

Fernandes AD, Atchley WR.

J Mol Evol. 2008 Jul;67(1):51-67. doi: 10.1007/s00239-008-9124-2. Epub 2008 Jun 17.

PMID:
18560747
9.

Hepatic endopolyploidy as a cellular consequence of age-specific selection for rate of development in mice.

Funk-Keenan J, Haire F, Woolard S, Atchley WR.

J Exp Zool B Mol Dev Evol. 2008 Jul 15;310(5):385-97. doi: 10.1002/jez.b.21211.

PMID:
18247336
10.

Application of complex demodulation on bZIP and bHLH-PAS protein domains.

Wang Z, Smith CE, Atchley WR.

Math Biosci. 2007 Jun;207(2):204-18. Epub 2007 Feb 3.

PMID:
17374384
11.
12.

Gaussian quadrature formulae for arbitrary positive measures.

Fernandes AD, Atchley WR.

Evol Bioinform Online. 2007 Feb 15;2:251-9.

13.
14.

Networks of coevolving sites in structural and functional domains of serpin proteins.

Buck MJ, Atchley WR.

Mol Biol Evol. 2005 Jul;22(7):1627-34. Epub 2005 Apr 27.

PMID:
15858204
15.

Sequence signatures and the probabilistic identification of proteins in the Myc-Max-Mad network.

Atchley WR, Fernandes AD.

Proc Natl Acad Sci U S A. 2005 May 3;102(18):6401-6. Epub 2005 Apr 25.

16.

Solving the protein sequence metric problem.

Atchley WR, Zhao J, Fernandes AD, Dr√ľke T.

Proc Natl Acad Sci U S A. 2005 May 3;102(18):6395-400. Epub 2005 Apr 25.

17.

Phylogenetic analysis of plant basic helix-loop-helix proteins.

Buck MJ, Atchley WR.

J Mol Evol. 2003 Jun;56(6):742-50.

PMID:
12911037
18.

Origin of the Black Shank Resistance Gene, Ph, in Tobacco Cultivar Coker 371-Gold.

Johnson ES, Wolff MF, Wernsman EA, Atchley WR, Shew HD.

Plant Dis. 2002 Oct;86(10):1080-1084. doi: 10.1094/PDIS.2002.86.10.1080.

PMID:
30818499
19.

Phylogenetic analyses of amino acid variation in the serpin proteins.

Atchley WR, Lokot T, Wollenberg K, Dress A, Ragg H.

Mol Biol Evol. 2001 Aug;18(8):1502-11.

PMID:
11470841
20.

Vertebrate serpins: construction of a conflict-free phylogeny by combining exon-intron and diagnostic site analyses.

Ragg H, Lokot T, Kamp PB, Atchley WR, Dress A.

Mol Biol Evol. 2001 Apr;18(4):577-84.

PMID:
11264410
21.

Characterization and differential expression of a human gene family of olfactomedin-related proteins.

Kulkarni NH, Karavanich CA, Atchley WR, Anholt RR.

Genet Res. 2000 Aug;76(1):41-50.

PMID:
11006633
22.

Body weight and tail length divergence in mice selected for rate of development.

Rhees BK, Atchley WR.

J Exp Zool. 2000 Aug 15;288(2):151-64.

PMID:
10931498
23.
24.

Effect of long-term selection for early postnatal growth rate on survival and prenatal development of transferred mouse embryos.

Ernst CA, Rhees BK, Miao CH, Atchley WR.

J Reprod Fertil. 2000 Jan;118(1):205-10.

PMID:
10793643
25.
26.
27.

Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis.

Atchley WR, Wollenberg KR, Fitch WM, Terhalle W, Dress AW.

Mol Biol Evol. 2000 Jan;17(1):164-78.

PMID:
10666716
28.

Evolution of bHLH transcription factors: modular evolution by domain shuffling?

Morgenstern B, Atchley WR.

Mol Biol Evol. 1999 Dec;16(12):1654-63.

PMID:
10605108
29.

Uterine and postnatal maternal effects in mice selected for differential rate of early development.

Rhees BK, Ernst CA, Miao CH, Atchley WR.

Genetics. 1999 Oct;153(2):905-17.

30.

Effect of selection for development rate on reproductive onset in female mice.

Ernst CA, Crenshaw PD, Atchley WR.

Genet Res. 1999 Aug;74(1):55-64.

PMID:
10505407
31.

Molecular evolution of helix-turn-helix proteins.

Rosinski JA, Atchley WR.

J Mol Evol. 1999 Sep;49(3):301-9.

PMID:
10473770
32.

Positional dependence, cliques, and predictive motifs in the bHLH protein domain.

Atchley WR, Terhalle W, Dress A.

J Mol Evol. 1999 May;48(5):501-16.

PMID:
10198117
33.

Segment-based scores for pairwise and multiple sequence alignments.

Morgenstern B, Atchley WR, Hahn K, Dress A.

Proc Int Conf Intell Syst Mol Biol. 1998;6:115-21.

PMID:
9783216
34.
35.
36.

Altering developmental trajectories in mice by restricted index selection.

Atchley WR, Xu S, Cowley DE.

Genetics. 1997 Jun;146(2):629-40.

37.

A natural classification of the basic helix-loop-helix class of transcription factors.

Atchley WR, Fitch WM.

Proc Natl Acad Sci U S A. 1997 May 13;94(10):5172-6.

38.
39.
40.

Heterozygosity of F2 from two segregating populations.

Xu S, Atchley WR.

J Hered. 1995 Nov-Dec;86(6):477-80.

PMID:
8568213
41.

Myc and Max: molecular evolution of a family of proto-oncogene products and their dimerization partner.

Atchley WR, Fitch WM.

Proc Natl Acad Sci U S A. 1995 Oct 24;92(22):10217-21.

42.

Hormone gradients and cartilage cell kinetics.

Vogl C, Atchley WR.

Cell Prolif. 1995 Aug;28(8):453-69.

PMID:
7548445
43.

Molecular evolution of the MyoD family of transcription factors.

Atchley WR, Fitch WM, Bronner-Fraser M.

Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11522-6.

44.

Phylogenetic inference under the pure drift model.

Xu S, Atchley WR, Fitch WM.

Mol Biol Evol. 1994 Nov;11(6):949-60.

PMID:
7815932
45.

The ontogeny of morphological differences in the mandible in two inbred strains of mice.

Vogl C, Atchley WR, Xu S.

J Craniofac Genet Dev Biol. 1994 Apr-Jun;14(2):97-110.

PMID:
8071427
46.

Partial and conditional maximum likelihood for variance-component estimation.

Xu S, Atchley WR, Muir WM.

J Anim Breed Genet. 1994 Jan 12;111(1-6):178-88. doi: 10.1111/j.1439-0388.1994.tb00456.x.

PMID:
21395768
47.

Developmental quantitative genetic models of evolutionary change.

Atchley WR, Xu S, Vogl C.

Dev Genet. 1994;15(1):92-103. Review.

PMID:
8187352
48.

Genetic affinities of inbred mouse strains of uncertain origin.

Atchley WR, Fitch W.

Mol Biol Evol. 1993 Nov;10(6):1150-69.

PMID:
8277849
49.

The epigenetic influence of growth hormone on skeletal development.

Vogl C, Atchley WR, Cowley DE, Crenshaw P, Murray JD, Pomp D.

Growth Dev Aging. 1993 Fall;57(3):163-82.

PMID:
8244621
50.

COMPARISON OF QUANTITATIVE GENETIC PARAMETERS.

Cowley DE, Atchley WR.

Evolution. 1992 Dec;46(6):1965-1967. doi: 10.1111/j.1558-5646.1992.tb01184.x. No abstract available.

PMID:
28567754

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