Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 151

1.

Inter-relationships between the heterotrimeric Gβ subunit AGB1, the RLK FERONIA and RALF1 in salinity response.

Yu Y, Assmann SM.

Plant Cell Environ. 2018 Jun 15. doi: 10.1111/pce.13370. [Epub ahead of print]

PMID:
29907954
2.

RNA structure: A LASER-focused view into cells.

Bevilacqua PC, Assmann SM.

Nat Chem Biol. 2018 Feb 14;14(3):200-201. doi: 10.1038/nchembio.2570. No abstract available.

PMID:
29443973
3.

StructureFold2: Bringing chemical probing data into the computational fold of RNA structural analysis.

Tack DC, Tang Y, Ritchey LE, Assmann SM, Bevilacqua PC.

Methods. 2018 Feb 2. pii: S1046-2023(17)30353-5. doi: 10.1016/j.ymeth.2018.01.018. [Epub ahead of print]

PMID:
29410279
4.

The G Protein β-Subunit, AGB1, Interacts with FERONIA in RALF1-Regulated Stomatal Movement.

Yu Y, Chakravorty D, Assmann SM.

Plant Physiol. 2018 Mar;176(3):2426-2440. doi: 10.1104/pp.17.01277. Epub 2018 Jan 4.

5.

Illuminating the role of the Gα heterotrimeric G protein subunit, RGA1, in regulating photoprotection and photoavoidance in rice.

Ferrero-Serrano Á, Su Z, Assmann SM.

Plant Cell Environ. 2018 Feb;41(2):451-468. doi: 10.1111/pce.13113. Epub 2018 Jan 9.

PMID:
29216416
6.

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, Gonzales M, Grotewold E, Gutierrez R, Kramer U, Krouk G, Ma S, Markelz RJC, Megraw M, Meyers BC, Murray JAH, Provart NJ, Rhee S, Smith R, Spalding EP, Taylor C, Teal TK, Torii KU, Town C, Vaughn M, Vierstra R, Ware D, Wilkins O, Williams C, Brady SM.

Plant Physiol. 2017 Dec;175(4):1499-1509. doi: 10.1104/pp.17.01490. No abstract available.

PMID:
29208732
7.

Modeling RNA secondary structure folding ensembles using SHAPE mapping data.

Spasic A, Assmann SM, Bevilacqua PC, Mathews DH.

Nucleic Acids Res. 2018 Jan 9;46(1):314-323. doi: 10.1093/nar/gkx1057.

8.

Glyoxals as in vivo RNA structural probes of guanine base-pairing.

Mitchell D 3rd, Ritchey LE, Park H, Babitzke P, Assmann SM, Bevilacqua PC.

RNA. 2018 Jan;24(1):114-124. doi: 10.1261/rna.064014.117. Epub 2017 Oct 13.

PMID:
29030489
9.
10.

A new discrete dynamic model of ABA-induced stomatal closure predicts key feedback loops.

Albert R, Acharya BR, Jeon BW, Zañudo JGT, Zhu M, Osman K, Assmann SM.

PLoS Biol. 2017 Sep 22;15(9):e2003451. doi: 10.1371/journal.pbio.2003451. eCollection 2017 Sep.

11.

Redox regulation of a guard cell SNF1-related protein kinase in Brassica napus, an oilseed crop.

Zhu M, Zhang T, Ji W, Silva-Sanchez C, Song WY, Assmann SM, Harmon AC, Chen S.

Biochem J. 2017 Jul 17;474(15):2585-2599. doi: 10.1042/BCJ20170070.

PMID:
28642254
12.

Structure-seq2: sensitive and accurate genome-wide profiling of RNA structure in vivo.

Ritchey LE, Su Z, Tang Y, Tack DC, Assmann SM, Bevilacqua PC.

Nucleic Acids Res. 2017 Aug 21;45(14):e135. doi: 10.1093/nar/gkx533.

13.

Bridging the gap between in vitro and in vivo RNA folding.

Leamy KA, Assmann SM, Mathews DH, Bevilacqua PC.

Q Rev Biophys. 2016 Jan;49:e10. Epub 2016 Jun 24.

14.

Genome-Wide Analysis of RNA Secondary Structure.

Bevilacqua PC, Ritchey LE, Su Z, Assmann SM.

Annu Rev Genet. 2016 Nov 23;50:235-266. Epub 2016 Sep 14. Review.

PMID:
27648642
15.

Guard cell sensory systems: recent insights on stomatal responses to light, abscisic acid, and CO2.

Assmann SM, Jegla T.

Curr Opin Plant Biol. 2016 Oct;33:157-167. doi: 10.1016/j.pbi.2016.07.003. Epub 2016 Aug 9. Review.

PMID:
27518594
16.

The α-subunit of the rice heterotrimeric G protein, RGA1, regulates drought tolerance during the vegetative phase in the dwarf rice mutant d1.

Ferrero-Serrano Á, Assmann SM.

J Exp Bot. 2016 May;67(11):3433-43. doi: 10.1093/jxb/erw183. Epub 2016 May 18.

17.

Molecular and systems approaches towards drought-tolerant canola crops.

Zhu M, Monroe JG, Suhail Y, Villiers F, Mullen J, Pater D, Hauser F, Jeon BW, Bader JS, Kwak JM, Schroeder JI, McKay JK, Assmann SM.

New Phytol. 2016 Jun;210(4):1169-89. doi: 10.1111/nph.13866. Epub 2016 Feb 16. Review.

18.

Protein Structure Is Related to RNA Structural Reactivity In Vivo.

Tang Y, Assmann SM, Bevilacqua PC.

J Mol Biol. 2016 Feb 27;428(5 Pt A):758-766. doi: 10.1016/j.jmb.2015.11.012. Epub 2015 Nov 17.

PMID:
26598238
19.

Preparation of Epidermal Peels and Guard Cell Protoplasts for Cellular, Electrophysiological, and -Omics Assays of Guard Cell Function.

Zhu M, Jeon BW, Geng S, Yu Y, Balmant K, Chen S, Assmann SM.

Methods Mol Biol. 2016;1363:89-121. doi: 10.1007/978-1-4939-3115-6_9.

PMID:
26577784
20.

50 years of Arabidopsis research: highlights and future directions.

Provart NJ, Alonso J, Assmann SM, Bergmann D, Brady SM, Brkljacic J, Browse J, Chapple C, Colot V, Cutler S, Dangl J, Ehrhardt D, Friesner JD, Frommer WB, Grotewold E, Meyerowitz E, Nemhauser J, Nordborg M, Pikaard C, Shanklin J, Somerville C, Stitt M, Torii KU, Waese J, Wagner D, McCourt P.

New Phytol. 2016 Feb;209(3):921-44. doi: 10.1111/nph.13687. Epub 2015 Oct 14. Review.

21.

The effect of NaCl on stomatal opening in Arabidopsis wild type and agb1 heterotrimeric G-protein mutant plants.

Yu Y, Assmann SM.

Plant Signal Behav. 2016;11(2):e1085275. doi: 10.1080/15592324.2015.1085275.

22.

Extra-Large G Proteins Expand the Repertoire of Subunits in Arabidopsis Heterotrimeric G Protein Signaling.

Chakravorty D, Gookin TE, Milner MJ, Yu Y, Assmann SM.

Plant Physiol. 2015 Sep;169(1):512-29. doi: 10.1104/pp.15.00251. Epub 2015 Jul 8.

23.

Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq.

Ding Y, Kwok CK, Tang Y, Bevilacqua PC, Assmann SM.

Nat Protoc. 2015 Jul;10(7):1050-66. doi: 10.1038/nprot.2015.064. Epub 2015 Jun 18.

PMID:
26086407
24.

The guard cell metabolome: functions in stomatal movement and global food security.

Misra BB, Acharya BR, Granot D, Assmann SM, Chen S.

Front Plant Sci. 2015 May 19;6:334. doi: 10.3389/fpls.2015.00334. eCollection 2015. Review.

25.

Expression of potato RNA-binding proteins StUBA2a/b and StUBA2c induces hypersensitive-like cell death and early leaf senescence in Arabidopsis.

Na JK, Kim JK, Kim DY, Assmann SM.

J Exp Bot. 2015 Jul;66(13):4023-33. doi: 10.1093/jxb/erv207. Epub 2015 May 5.

26.

StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.

Tang Y, Bouvier E, Kwok CK, Ding Y, Nekrutenko A, Bevilacqua PC, Assmann SM.

Bioinformatics. 2015 Aug 15;31(16):2668-75. doi: 10.1093/bioinformatics/btv213. Epub 2015 Apr 16.

PMID:
25886980
27.

The heterotrimeric G-protein β subunit, AGB1, plays multiple roles in the Arabidopsis salinity response.

Yu Y, Assmann SM.

Plant Cell Environ. 2015 Oct;38(10):2143-56. doi: 10.1111/pce.12542. Epub 2015 May 12.

PMID:
25808946
28.

The RNA structurome: transcriptome-wide structure probing with next-generation sequencing.

Kwok CK, Tang Y, Assmann SM, Bevilacqua PC.

Trends Biochem Sci. 2015 Apr;40(4):221-32. doi: 10.1016/j.tibs.2015.02.005. Epub 2015 Mar 18. Review.

PMID:
25797096
29.

A stable RNA G-quadruplex within the 5'-UTR of Arabidopsis thaliana ATR mRNA inhibits translation.

Kwok CK, Ding Y, Shahid S, Assmann SM, Bevilacqua PC.

Biochem J. 2015 Apr 1;467(1):91-102. doi: 10.1042/BJ20141063.

PMID:
25793418
30.

Evidence for an unusual transmembrane configuration of AGG3, a class C Gγ subunit of Arabidopsis.

Wolfenstetter S, Chakravorty D, Kula R, Urano D, Trusov Y, Sheahan MB, McCurdy DW, Assmann SM, Jones AM, Botella JR.

Plant J. 2015 Feb;81(3):388-98. doi: 10.1111/tpj.12732. Epub 2014 Dec 22.

31.

Multi-level modeling of light-induced stomatal opening offers new insights into its regulation by drought.

Sun Z, Jin X, Albert R, Assmann SM.

PLoS Comput Biol. 2014 Nov 13;10(11):e1003930. doi: 10.1371/journal.pcbi.1003930. eCollection 2014 Nov. Erratum in: PLoS Comput Biol. 2016 Nov 30;12 (11):e1005181.

32.

Significant reduction of BiFC non-specific assembly facilitates in planta assessment of heterotrimeric G-protein interactors.

Gookin TE, Assmann SM.

Plant J. 2014 Nov;80(3):553-67. doi: 10.1111/tpj.12639. Epub 2014 Sep 27.

33.

Metabolite transporter regulation of ABA function and guard cell response.

Yu Y, Assmann SM.

Mol Plant. 2014 Oct;7(10):1505-7. doi: 10.1093/mp/ssu093. Epub 2014 Aug 30. No abstract available.

34.

Plant single-cell and single-cell-type metabolomics.

Misra BB, Assmann SM, Chen S.

Trends Plant Sci. 2014 Oct;19(10):637-46. doi: 10.1016/j.tplants.2014.05.005. Epub 2014 Jun 17. Review.

PMID:
24946988
35.

Border control--a membrane-linked interactome of Arabidopsis.

Jones AM, Xuan Y, Xu M, Wang RS, Ho CH, Lalonde S, You CH, Sardi MI, Parsa SA, Smith-Valle E, Su T, Frazer KA, Pilot G, Pratelli R, Grossmann G, Acharya BR, Hu HC, Engineer C, Villiers F, Ju C, Takeda K, Su Z, Dong Q, Assmann SM, Chen J, Kwak JM, Schroeder JI, Albert R, Rhee SY, Frommer WB.

Science. 2014 May 16;344(6185):711-6. doi: 10.1126/science.1251358.

PMID:
24833385
36.

Thiol-based redox proteins in abscisic acid and methyl jasmonate signaling in Brassica napus guard cells.

Zhu M, Zhu N, Song WY, Harmon AC, Assmann SM, Chen S.

Plant J. 2014 May;78(3):491-515. doi: 10.1111/tpj.12490. Epub 2014 Apr 15.

37.

Abscisic acid-responsive guard cell metabolomes of Arabidopsis wild-type and gpa1 G-protein mutants.

Jin X, Wang RS, Zhu M, Jeon BW, Albert R, Chen S, Assmann SM.

Plant Cell. 2013 Dec;25(12):4789-811. doi: 10.1105/tpc.113.119800. Epub 2013 Dec 24.

38.

Determination of in vivo RNA structure in low-abundance transcripts.

Kwok CK, Ding Y, Tang Y, Assmann SM, Bevilacqua PC.

Nat Commun. 2013;4:2971. doi: 10.1038/ncomms3971.

PMID:
24336128
39.

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

Ding Y, Tang Y, Kwok CK, Zhang Y, Bevilacqua PC, Assmann SM.

Nature. 2014 Jan 30;505(7485):696-700. doi: 10.1038/nature12756. Epub 2013 Nov 24.

PMID:
24270811
40.

Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis.

Su Z, Ma X, Guo H, Sukiran NL, Guo B, Assmann SM, Ma H.

Plant Cell. 2013 Oct;25(10):3785-807. doi: 10.1105/tpc.113.115428. Epub 2013 Oct 31.

41.

Open Stomata 1 (OST1) is limiting in abscisic acid responses of Arabidopsis guard cells.

Acharya BR, Jeon BW, Zhang W, Assmann SM.

New Phytol. 2013 Dec;200(4):1049-63. doi: 10.1111/nph.12469. Epub 2013 Sep 3.

42.

A hybridization-based approach for quantitative and low-bias single-stranded DNA ligation.

Kwok CK, Ding Y, Sherlock ME, Assmann SM, Bevilacqua PC.

Anal Biochem. 2013 Apr 15;435(2):181-6. doi: 10.1016/j.ab.2013.01.008. Epub 2013 Jan 31.

PMID:
23399535
43.

Gene-sharing networks reveal organizing principles of transcriptomes in Arabidopsis and other multicellular organisms.

Li S, Pandey S, Gookin TE, Zhao Z, Wilson L, Assmann SM.

Plant Cell. 2012 Apr;24(4):1362-78. doi: 10.1105/tpc.111.094748. Epub 2012 Apr 18.

44.

Toward a digital gene response: RNA G-quadruplexes with fewer quartets fold with higher cooperativity.

Mullen MA, Assmann SM, Bevilacqua PC.

J Am Chem Soc. 2012 Jan 18;134(2):812-5. doi: 10.1021/ja2096255. Epub 2011 Dec 28.

PMID:
22239732
46.
47.

An atypical heterotrimeric G-protein γ-subunit is involved in guard cell K⁺-channel regulation and morphological development in Arabidopsis thaliana.

Chakravorty D, Trusov Y, Zhang W, Acharya BR, Sheahan MB, McCurdy DW, Assmann SM, Botella JR.

Plant J. 2011 Sep;67(5):840-51. doi: 10.1111/j.1365-313X.2011.04638.x. Epub 2011 Jun 24.

48.

Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells.

Wang RS, Pandey S, Li S, Gookin TE, Zhao Z, Albert R, Assmann SM.

BMC Genomics. 2011 May 9;12:216. doi: 10.1186/1471-2164-12-216.

49.

Heterotrimeric G-protein regulation of ROS signalling and calcium currents in Arabidopsis guard cells.

Zhang W, Jeon BW, Assmann SM.

J Exp Bot. 2011 Apr;62(7):2371-9. doi: 10.1093/jxb/erq424. Epub 2011 Jan 24.

PMID:
21262908
50.

RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: prevalence and possible functional roles.

Mullen MA, Olson KJ, Dallaire P, Major F, Assmann SM, Bevilacqua PC.

Nucleic Acids Res. 2010 Dec;38(22):8149-63. doi: 10.1093/nar/gkq804. Epub 2010 Sep 21.

Supplemental Content

Loading ...
Support Center