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Gene Tags Assessment by Comparative Genomics (GTACG): A User-Friendly Framework for Bacterial Comparative Genomics.

Santiago CRDN, Assis RAB, Moreira LM, Digiampietri LA.

Front Genet. 2019 Aug 26;10:725. doi: 10.3389/fgene.2019.00725. eCollection 2019.


Out of the testis, into the ovary: biased outcomes of gene duplication and deletion in Drosophila.

Assis R.

Evolution. 2019 Sep;73(9):1850-1862. doi: 10.1111/evo.13820.


Use of an Influenza Antigen Microarray to Measure the Breadth of Serum Antibodies Across Virus Subtypes.

Khan S, Jain A, Taghavian O, Nakajima R, Jasinskas A, Supnet M, Felgner J, Davies J, de Assis RR, Jan S, Obiero J, Strahsburger E, Pone EJ, Liang L, Davies DH, Felgner PL.

J Vis Exp. 2019 Jul 26;(149). doi: 10.3791/59973.


Implications of carbohydrate sources and rate of body weight gain on puberty in ewe lambs in tropical climate conditions.

Ferreira EM, de Castro Ferraz MV Jr, Biava JS, de Assis RG, Barroso JPR, Polizel DM, de Araujo LC, Pires AV.

Trop Anim Health Prod. 2019 Aug 1. doi: 10.1007/s11250-019-02025-7. [Epub ahead of print]


Efficiency of a Quantum Otto Heat Engine Operating under a Reservoir at Effective Negative Temperatures.

de Assis RJ, de Mendonça TM, Villas-Boas CJ, de Souza AM, Sarthour RS, Oliveira IS, de Almeida NG.

Phys Rev Lett. 2019 Jun 21;122(24):240602. doi: 10.1103/PhysRevLett.122.240602.


A low-cost portable system for elemental mapping by XRF aiming in situ analyses.

Campos PHOV, Appoloni CR, Rizzutto MA, Leite AR, Assis RF, Santos HC, Silva TF, Rodrigues CL, Tabacniks MH, Added N.

Appl Radiat Isot. 2019 Oct;152:78-85. doi: 10.1016/j.apradiso.2019.06.018. Epub 2019 Jun 13.


Curcumin combined with metformin decreases glycemia and dyslipidemia, and increases paraoxonase activity in diabetic rats.

Roxo DF, Arcaro CA, Gutierres VO, Costa MC, Oliveira JO, Lima TFO, Assis RP, Brunetti IL, Baviera AM.

Diabetol Metab Syndr. 2019 Apr 30;11:33. doi: 10.1186/s13098-019-0431-0. eCollection 2019.


In vitro methods to determine the antioxidant activity of caffeic acid.

Spagnol CM, Assis RP, Brunetti IL, Isaac VLB, Salgado HRN, Corrêa MA.

Spectrochim Acta A Mol Biomol Spectrosc. 2019 Aug 5;219:358-366. doi: 10.1016/j.saa.2019.04.025. Epub 2019 Apr 16.


Rapid functional divergence after small-scale gene duplication in grasses.

Jiang X, Assis R.

BMC Evol Biol. 2019 May 2;19(1):97. doi: 10.1186/s12862-019-1415-2.


Genotoxic Evaluation in Tadpoles Associated with Agriculture in the Central Cerrado, Brazil.

Borges RE, Santos LRS, Benvindo-Souza M, Modesto RS, Assis RA, de Oliveira C.

Arch Environ Contam Toxicol. 2019 Jul;77(1):22-28. doi: 10.1007/s00244-019-00623-y. Epub 2019 Apr 4.


N, N', N″-trisubstituted guanidines: Synthesis, characterization and evaluation of their leishmanicidal activity.

do Espírito Santo RD, Velásquez ÁMA, Passianoto LVG, Sepulveda AAL, da Costa Clementino L, Assis RP, Baviera AM, Kalaba P, Dos Santos FN, Éberlin MN, da Silva GVJ, Zehl M, Lubec G, Graminha MAS, González ERP.

Eur J Med Chem. 2019 Jun 1;171:116-128. doi: 10.1016/j.ejmech.2019.03.032. Epub 2019 Mar 21.


Intra-Vesical Colistin for Pseudomonas aeruginosa Urinary Tract Infections.

Assis RE, Coelho I, Real A, França L, Araújo A, Pereira T, Catorze N.

Eur J Case Rep Intern Med. 2019 Jan 21;6(1):000996. doi: 10.12890/2019_000996. eCollection 2019.


The evolving epidemiology of rotavirus A infection in Brazil a decade after the introduction of universal vaccination with Rotarix®.

Carvalho-Costa FA, de Assis RMS, Fialho AM, Araújo IT, Silva MF, Gómez MM, Andrade JS, Rose TL, Fumian TM, Volotão EM, Miagostovich MP, Leite JPG.

BMC Pediatr. 2019 Jan 31;19(1):42. doi: 10.1186/s12887-019-1415-9.


Curcumin improves the effect of a reduced insulin dose on glycemic control and oxidative stress in streptozotocin-diabetic rats.

Gutierres VO, Assis RP, Arcaro CA, Oliveira JO, Lima TFO, Beretta ALRZ, Costa PI, Baviera AM, Brunetti IL.

Phytother Res. 2019 Apr;33(4):976-988. doi: 10.1002/ptr.6291. Epub 2019 Jan 18.


Vitamin and bioactive compound diversity of seven fruit species from south Brazil.

Schmidt HO, Rockett FC, Pagno CH, Possa J, Assis RQ, de Oliveira VR, da Silva VL, Flôres SH, Rios AO.

J Sci Food Agric. 2019 May;99(7):3307-3317. doi: 10.1002/jsfa.9544. Epub 2019 Feb 4.


RG108 increases NANOG and OCT4 in bone marrow-derived mesenchymal cells through global changes in DNA modifications and epigenetic activation.

Assis RIF, Wiench M, Silvério KG, da Silva RA, Feltran GDS, Sallum EA, Casati MZ, Nociti FH Jr, Andia DC.

PLoS One. 2018 Dec 3;13(12):e0207873. doi: 10.1371/journal.pone.0207873. eCollection 2018.


Monitoring the morphological integrity of neotropical anurans.

Borges RE, de Souza Santos LR, Assis RA, Benvindo-Souza M, Franco-Belussi L, de Oliveira C.

Environ Sci Pollut Res Int. 2019 Jan;26(3):2623-2634. doi: 10.1007/s11356-018-3779-z. Epub 2018 Nov 24.


Biotechnological potential of plant growth-promoting bacteria from the roots and rhizospheres of endemic plants in ironstone vegetation in southeastern Brazil.

Felestrino ÉB, Vieira IT, Caneschi WL, Cordeiro IF, Assis RAB, Lemes CGC, Fonseca NP, Sanchez AB, Cepeda JCC, Ferro JA, Garcia CCM, do Carmo FF, Kamino LHY, Moreira LM.

World J Microbiol Biotechnol. 2018 Oct 4;34(10):156. doi: 10.1007/s11274-018-2538-0.


The role of triiodothyronine hormone and mechanically-stressed endothelial cell paracrine signalling synergism in gene reprogramming during hBMSC-stimulated osteogenic phenotype in vitro.

da Silva RA, de Camargo Andrade AF, da Silva Feltran G, Fernandes CJDC, de Assis RIF, Ferreira MR, Andia DC, Zambuzzi WF.

Mol Cell Endocrinol. 2018 Dec 15;478:151-167. doi: 10.1016/j.mce.2018.08.008. Epub 2018 Aug 22.


Effects of Host Interspecific Interaction in the Maculinea-Myrmica Parasite-Host System.

de Assis RA, Casacci LP, Bonelli S, Barbero F, de Assis LME, Venturino E.

Bull Math Biol. 2018 Sep;80(9):2378-2407. doi: 10.1007/s11538-018-0466-7. Epub 2018 Aug 6.


Brazilian Ironstone Plant Communities as Reservoirs of Culturable Bacteria With Diverse Biotechnological Potential.

Caneschi WL, Felestrino ÉB, Fonseca NP, Villa MM, Lemes CGC, Cordeiro IF, Assis RAB, Sanchez AB, Vieira IT, Kamino LHY, do Carmo FF, Garcia CCM, Moreira LM.

Front Microbiol. 2018 Jul 23;9:1638. doi: 10.3389/fmicb.2018.01638. eCollection 2018.


Comparison of humoral neutralizing antibody response in rabbits, guinea pigs, and cattle vaccinated with epsilon and beta toxoids from Clostridium perfringens and C. botulinum types C and D toxoids.

Silva ROS, Duarte MC, Oliveira Junior CA, de Assis RA, Lana AMQ, Lobato FCF.

Anaerobe. 2018 Dec;54:19-22. doi: 10.1016/j.anaerobe.2018.07.014. Epub 2018 Aug 1.


Emodin, Physcion, and Crude Extract of Rhamnus sphaerosperma var. pubescens Induce Mixed Cell Death, Increase in Oxidative Stress, DNA Damage, and Inhibition of AKT in Cervical and Oral Squamous Carcinoma Cell Lines.

Moreira TF, Sorbo JM, Souza FO, Fernandes BC, Ocampos FMM, de Oliveira DMS, Arcaro CA, Assis RP, Barison A, Miguel OG, Baviera AM, Soares CP, Brunetti IL.

Oxid Med Cell Longev. 2018 Jul 3;2018:2390234. doi: 10.1155/2018/2390234. eCollection 2018.


Coadministration of Nematophagous Fungi for Biological Control over Nematodes in Bovine in the South-Eastern Brazil.

Luns FD, Assis RCL, Silva LPC, Ferraz CM, Braga FR, de Araújo JV.

Biomed Res Int. 2018 Mar 26;2018:2934674. doi: 10.1155/2018/2934674. eCollection 2018.


Type C botulism in domestic chickens, dogs and black-pencilled marmoset (Callithrix penicillata) in Minas Gerais, Brazil.

Silva ROS, Martins RA, Assis RA, Oliveira Junior CA, Lobato FCF.

Anaerobe. 2018 Jun;51:47-49. doi: 10.1016/j.anaerobe.2018.03.013. Epub 2018 Apr 3.


Insulin treatment reverses the increase in atrogin-1 expression in atrophied skeletal muscles of diabetic rats with acute joint inflammation.

Pinheiro-Dardis CM, Gutierres VO, Assis RP, Peviani SM, Delfino GB, Durigan JLQ, Salvini TF, Baviera AM, Brunetti IL.

Ther Clin Risk Manag. 2018 Feb 14;14:275-286. doi: 10.2147/TCRM.S142948. eCollection 2018.


Increased Levels of Txa₂ Induced by Dengue Virus Infection in IgM Positive Individuals Is Related to the Mild Symptoms of Dengue.

Oliveira ES, Colombarolli SG, Nascimento CS, Batista ICA, Ferreira JGG, Alvarenga DLR, de Sousa LOB, Assis RR, Rocha MN, Alves ÉAR, Calzavara-Silva CE.

Viruses. 2018 Feb 28;10(3). pii: E104. doi: 10.3390/v10030104.


Involvement of cAMP/EPAC/Akt signaling in the antiproteolytic effects of pentoxifylline on skeletal muscles of diabetic rats.

Arcaro CA, Assis RP, Zanon NM, Paula-Gomes S, Navegantes LCC, Kettelhut IC, Brunetti IL, Baviera AM.

J Appl Physiol (1985). 2018 Mar 1;124(3):704-716. doi: 10.1152/japplphysiol.00499.2017. Epub 2017 Dec 14.


Species Distribution Modelling: Contrasting presence-only models with plot abundance data.

Gomes VHF, IJff SD, Raes N, Amaral IL, Salomão RP, de Souza Coelho L, de Almeida Matos FD, Castilho CV, de Andrade Lima Filho D, López DC, Guevara JE, Magnusson WE, Phillips OL, Wittmann F, de Jesus Veiga Carim M, Martins MP, Irume MV, Sabatier D, Molino JF, Bánki OS, da Silva Guimarães JR, Pitman NCA, Piedade MTF, Mendoza AM, Luize BG, Venticinque EM, de Leão Novo EMM, Vargas PN, Silva TSF, Manzatto AG, Terborgh J, Reis NFC, Montero JC, Casula KR, Marimon BS, Marimon BH, Coronado ENH, Feldpausch TR, Duque A, Zartman CE, Arboleda NC, Killeen TJ, Mostacedo B, Vasquez R, Schöngart J, Assis RL, Medeiros MB, Simon MF, Andrade A, Laurance WF, Camargo JL, Demarchi LO, Laurance SGW, de Sousa Farias E, Nascimento HEM, Revilla JDC, Quaresma A, Costa FRC, Vieira ICG, Cintra BBL, Castellanos H, Brienen R, Stevenson PR, Feitosa Y, Duivenvoorden JF, Aymard C GA, Mogollón HF, Targhetta N, Comiskey JA, Vicentini A, Lopes A, Damasco G, Dávila N, García-Villacorta R, Levis C, Schietti J, Souza P, Emilio T, Alonso A, Neill D, Dallmeier F, Ferreira LV, Araujo-Murakami A, Praia D, do Amaral DD, Carvalho FA, de Souza FC, Feeley K, Arroyo L, Pansonato MP, Gribel R, Villa B, Licona JC, Fine PVA, Cerón C, Baraloto C, Jimenez EM, Stropp J, Engel J, Silveira M, Mora MCP, Petronelli P, Maas P, Thomas-Caesar R, Henkel TW, Daly D, Paredes MR, Baker TR, Fuentes A, Peres CA, Chave J, Pena JLM, Dexter KG, Silman MR, Jørgensen PM, Pennington T, Di Fiore A, Valverde FC, Phillips JF, Rivas-Torres G, von Hildebrand P, van Andel TR, Ruschel AR, Prieto A, Rudas A, Hoffman B, Vela CIA, Barbosa EM, Zent EL, Gonzales GPG, Doza HPD, de Andrade Miranda IP, Guillaumet JL, Pinto LFM, de Matos Bonates LC, Silva N, Gómez RZ, Zent S, Gonzales T, Vos VA, Malhi Y, Oliveira AA, Cano A, Albuquerque BW, Vriesendorp C, Correa DF, Torre EV, van der Heijden G, Ramirez-Angulo H, Ramos JF, Young KR, Rocha M, Nascimento MT, Medina MNU, Tirado M, Wang O, Sierra R, Torres-Lezama A, Mendoza C, Ferreira C, Baider C, Villarroel D, Balslev H, Mesones I, Giraldo LEU, Casas LF, Reategui MAA, Linares-Palomino R, Zagt R, Cárdenas S, Farfan-Rios W, Sampaio AF, Pauletto D, Sandoval EHV, Arevalo FR, Huamantupa-Chuquimaco I, Garcia-Cabrera K, Hernandez L, Gamarra LV, Alexiades MN, Pansini S, Cuenca WP, Milliken W, Ricardo J, Lopez-Gonzalez G, Pos E, Ter Steege H.

Sci Rep. 2018 Jan 17;8(1):1003. doi: 10.1038/s41598-017-18927-1.


Lipophosphoglycan polymorphisms do not affect Leishmania amazonensis development in the permissive vectors Lutzomyia migonei and Lutzomyia longipalpis.

Nogueira PM, Guimarães AC, Assis RR, Sadlova J, Myskova J, Pruzinova K, Hlavackova J, Turco SJ, Torrecilhas AC, Volf P, Soares RP.

Parasit Vectors. 2017 Dec 16;10(1):608. doi: 10.1186/s13071-017-2568-8.


Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae.

Assis RAB, Polloni LC, Patané JSL, Thakur S, Felestrino ÉB, Diaz-Caballero J, Digiampietri LA, Goulart LR, Almeida NF, Nascimento R, Dandekar AM, Zaini PA, Setubal JC, Guttman DS, Moreira LM.

Sci Rep. 2017 Nov 23;7(1):16133. doi: 10.1038/s41598-017-16325-1.


The micronucleus test for the oral mucosa: global trends and new questions.

Benvindo-Souza M, Assis RA, Oliveira EAS, Borges RE, Santos LRS.

Environ Sci Pollut Res Int. 2017 Dec;24(36):27724-27730. doi: 10.1007/s11356-017-0727-2. Epub 2017 Nov 19. Review.


TabPath: interactive tables for metabolic pathway analysis.

Moraes LÂG, Felestrino ÉB, Assis RAB, Matos D, Lima JC, Lima LA, Almeida NF, Setubal JC, Garcia CCM, Moreira LM.

Bioinformatics. 2018 Mar 15;34(6):1040-1042. doi: 10.1093/bioinformatics/btx714.


Factors associated with the burden of family caregivers of patients with mental disorders: a cross-sectional study.

Souza ALR, Guimarães RA, de Araújo Vilela D, de Assis RM, de Almeida Cavalcante Oliveira LM, Souza MR, Nogueira DJ, Barbosa MA.

BMC Psychiatry. 2017 Oct 25;17(1):353. doi: 10.1186/s12888-017-1501-1.


Natural Selection Drives Rapid Functional Evolution of Young Drosophila Duplicate Genes.

Jiang X, Assis R.

Mol Biol Evol. 2017 Dec 1;34(12):3089-3098. doi: 10.1093/molbev/msx230.


Enteric viruses in HIV-1 seropositive and HIV-1 seronegative children with diarrheal diseases in Brazil.

Portes SAR, Carvalho-Costa FA, Rocha MS, Fumian TM, Maranhão AG, de Assis RM, Xavier MDPTP, Rocha MS, Miagostovich MP, Leite JPG, Volotão EM.

PLoS One. 2017 Aug 30;12(8):e0183196. doi: 10.1371/journal.pone.0183196. eCollection 2017.


Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection.

Moreira LM, Soares MR, Facincani AP, Ferreira CB, Ferreira RM, Ferro MIT, Gozzo FC, Felestrino ÉB, Assis RAB, Garcia CCM, Setubal JC, Ferro JA, de Oliveira JCF.

BMC Microbiol. 2017 Jul 11;17(1):155. doi: 10.1186/s12866-017-1063-x.


Low-dose methotrexate in sickle-cell disease: a pilot study with rationale borrowed from rheumatoid arthritis.

Brandalise SR, Assis R, Laranjeira ABA, Yunes JA, de Campos-Lima PO.

Exp Hematol Oncol. 2017 Jun 19;6:18. doi: 10.1186/s40164-017-0078-1. eCollection 2017.


Efficacy of a Binuclear Cyclopalladated Compound Therapy for Cutaneous Leishmaniasis in the Murine Model of Infection with Leishmania amazonensis and Its Inhibitory Effect on Topoisomerase 1B.

Velásquez AMA, Ribeiro WC, Venn V, Castelli S, Camargo MS, de Assis RP, de Souza RA, Ribeiro AR, Passalacqua TG, da Rosa JA, Baviera AM, Mauro AE, Desideri A, Almeida-Amaral EE, Graminha MAS.

Antimicrob Agents Chemother. 2017 Jul 25;61(8). pii: e00688-17. doi: 10.1128/AAC.00688-17. Print 2017 Aug.


The Brazilian freshwater wetscape: Changes in tree community diversity and composition on climatic and geographic gradients.

Wittmann F, Marques MC, Damasceno Júnior G, Budke JC, Piedade MT, de Oliveira Wittmann A, Montero JC, de Assis RL, Targhetta N, Parolin P, Junk WJ, Householder JE.

PLoS One. 2017 Apr 10;12(4):e0175003. doi: 10.1371/journal.pone.0175003. eCollection 2017.


Combined Effects of Curcumin and Lycopene or Bixin in Yoghurt on Inhibition of LDL Oxidation and Increases in HDL and Paraoxonase Levels in Streptozotocin-Diabetic Rats.

Assis RP, Arcaro CA, Gutierres VO, Oliveira JO, Costa PI, Baviera AM, Brunetti IL.

Int J Mol Sci. 2017 Mar 23;18(4). pii: E332. doi: 10.3390/ijms18040332.


VP7 and VP8* genetic characterization of group A rotavirus genotype G12P[8]: Emergence and spreading in the Eastern Brazilian coast in 2014.

da Silva MF, Fumian TM, de Assis RM, Fialho AM, Carvalho-Costa FA, da Silva Ribeiro de Andrade J, Leite JP.

J Med Virol. 2017 Jan;89(1):64-70. doi: 10.1002/jmv.24605. Epub 2016 Jul 12.


Hepatic function and antioxidant activity in diabetic rats subjected to diet supplemented with multimixture.

Teixeira JM, Martins MD, Soares LF, Sales AL, Damasceno DC, Cunha FV, De Assis RC, Santos Júnior JC, Sousa NM.

Nutr Hosp. 2016 Sep 20;33(5):589. doi: 10.20960/nh.589.


Lipophosphoglycans from Leishmania amazonensis Strains Display Immunomodulatory Properties via TLR4 and Do Not Affect Sand Fly Infection.

Nogueira PM, Assis RR, Torrecilhas AC, Saraiva EM, Pessoa NL, Campos MA, Marialva EF, Ríos-Velasquez CM, Pessoa FA, Secundino NF, Rugani JN, Nieves E, Turco SJ, Melo MN, Soares RP.

PLoS Negl Trop Dis. 2016 Aug 10;10(8):e0004848. doi: 10.1371/journal.pntd.0004848. eCollection 2016 Aug.


Magnesium Status and Its Association with Oxidative Stress in Obese Women.

Morais JBS, Severo JS, de Oliveira ARS, Cruz KJC, da Silva Dias TM, de Assis RC, Colli C, do Nascimento Marreiro D.

Biol Trace Elem Res. 2017 Feb;175(2):306-311. doi: 10.1007/s12011-016-0797-x.


Acute Poisoning in Children in Bahia, Brazil.

Rodrigues Mendonça D, Menezes MS, Matos MA, Rebouças DS, Filho JN, de Assis RS, Carneiro L.

Glob Pediatr Health. 2016 Feb 17;3:2333794X15623243. doi: 10.1177/2333794X15623243. eCollection 2016.


A non-enteric adenovirus A12 gastroenteritis outbreak in Rio de Janeiro, Brazil.

Portes SA, Volotão Ede M, Rocha MS, Rebelo MC, Xavier Mda P, Assis RM, Rose TL, Miagostovich MP, Leite JP, Carvalho-Costa FA.

Mem Inst Oswaldo Cruz. 2016 May 24;111(6):403-6. doi: 10.1590/0074-02760160030.


A next-generation proteome array for Schistosoma mansoni.

de Assis RR, Ludolf F, Nakajima R, Jasinskas A, Oliveira GC, Felgner PL, Gaze ST, Loukas A, LoVerde PT, Bethony JM, Correa-Oliveira R, Calzavara-Silva CE.

Int J Parasitol. 2016 Jun;46(7):411-5. doi: 10.1016/j.ijpara.2016.04.001. Epub 2016 Apr 27.


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