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Large Scale Screening of Epichloë Endophytes Infecting Schedonorus pratensis and Other Forage Grasses Reveals a Relation Between Microsatellite-Based Haplotypes and Loline Alkaloid Levels.

Cagnano G, Roulund N, Jensen CS, Forte FP, Asp T, Leuchtmann A.

Front Plant Sci. 2019 Jun 12;10:765. doi: 10.3389/fpls.2019.00765. eCollection 2019.


Breaking Free: The Genomics of Allopolyploidy-Facilitated Niche Expansion in White Clover.

Griffiths AG, Moraga R, Tausen M, Gupta V, Bilton TP, Campbell MA, Ashby R, Nagy I, Khan A, Larking A, Anderson C, Franzmayr B, Hancock K, Scott A, Ellison NW, Cox MP, Asp T, Mailund T, Schierup MH, Andersen SU.

Plant Cell. 2019 Jul;31(7):1466-1487. doi: 10.1105/tpc.18.00606. Epub 2019 Apr 25.


Integrating a newly developed BAC-based physical mapping resource for Lolium perenne with a genome-wide association study across a L. perenne European ecotype collection identifies genomic contexts associated with agriculturally important traits.

Harper J, De Vega J, Swain S, Heavens D, Gasior D, Thomas A, Evans C, Lovatt A, Lister S, Thorogood D, Skøt L, Hegarty M, Blackmore T, Kudrna D, Byrne S, Asp T, Powell W, Fernandez-Fuentes N, Armstead I.

Ann Bot. 2019 Jun 24;123(6):977-992. doi: 10.1093/aob/mcy230.


De novo assembly of Agave sisalana transcriptome in response to drought stress provides insight into the tolerance mechanisms.

Sarwar MB, Ahmad Z, Rashid B, Hassan S, Gregersen PL, Leyva MO, Nagy I, Asp T, Husnain T.

Sci Rep. 2019 Jan 23;9(1):396. doi: 10.1038/s41598-018-35891-6.


Pooled DNA sequencing to identify SNPs associated with a major QTL for bacterial wilt resistance in Italian ryegrass (Lolium multiflorum Lam.).

Knorst V, Byrne S, Yates S, Asp T, Widmer F, Studer B, Kölliker R.

Theor Appl Genet. 2019 Apr;132(4):947-958. doi: 10.1007/s00122-018-3250-z. Epub 2018 Nov 30.


SNP markers associated with body size and pelt length in American mink (Neovison vison).

Cai Z, Villumsen TM, Asp T, Guldbrandtsen B, Sahana G, Lund MS.

BMC Genet. 2018 Nov 12;19(1):103. doi: 10.1186/s12863-018-0688-6.


Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne).

Veeckman E, Van Glabeke S, Haegeman A, Muylle H, van Parijs FRD, Byrne SL, Asp T, Studer B, Rohde A, Roldán-Ruiz I, Vandepoele K, Ruttink T.

DNA Res. 2019 Feb 1;26(1):1-12. doi: 10.1093/dnares/dsy033.


The Value of Expanding the Training Population to Improve Genomic Selection Models in Tetraploid Potato.

Sverrisdóttir E, Sundmark EHR, Johnsen HØ, Kirk HG, Asp T, Janss L, Bryan G, Nielsen KL.

Front Plant Sci. 2018 Aug 6;9:1118. doi: 10.3389/fpls.2018.01118. eCollection 2018.


Optimized Use of Low-Depth Genotyping-by-Sequencing for Genomic Prediction Among Multi-Parental Family Pools and Single Plants in Perennial Ryegrass (Lolium perenne L.).

Cericola F, Lenk I, Fè D, Byrne S, Jensen CS, Pedersen MG, Asp T, Jensen J, Janss L.

Front Plant Sci. 2018 Mar 21;9:369. doi: 10.3389/fpls.2018.00369. eCollection 2018.


DArT, SNP, and SSR analyses of genetic diversity in Lolium perenne L. using bulk sampling.

Liu S, Feuerstein U, Luesink W, Schulze S, Asp T, Studer B, Becker HC, Dehmer KJ.

BMC Genet. 2018 Jan 22;19(1):10. doi: 10.1186/s12863-017-0589-0.


Transcript profiling of a bitter variety of narrow-leafed lupin to discover alkaloid biosynthetic genes.

Yang T, Nagy I, Mancinotti D, Otterbach SL, Andersen TB, Motawia MS, Asp T, Geu-Flores F.

J Exp Bot. 2017 Nov 28;68(20):5527-5537. doi: 10.1093/jxb/erx362.


Auxin Binding Protein 1 Reinforces Resistance to Sugarcane Mosaic Virus in Maize.

Leng P, Ji Q, Asp T, Frei UK, Ingvardsen CR, Xing Y, Studer B, Redinbaugh M, Jones M, Gajjar P, Liu S, Li F, Pan G, Xu M, Lübberstedt T.

Mol Plant. 2017 Oct 9;10(10):1357-1360. doi: 10.1016/j.molp.2017.07.013. Epub 2017 Aug 5. No abstract available.


Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing.

Sverrisdóttir E, Byrne S, Sundmark EHR, Johnsen HØ, Kirk HG, Asp T, Janss L, Nielsen KL.

Theor Appl Genet. 2017 Oct;130(10):2091-2108. doi: 10.1007/s00122-017-2944-y. Epub 2017 Jul 13.


The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry.

Byrne SL, Erthmann PØ, Agerbirk N, Bak S, Hauser TP, Nagy I, Paina C, Asp T.

Sci Rep. 2017 Jan 17;7:40728. doi: 10.1038/srep40728.


Accuracy of Genomic Prediction in a Commercial Perennial Ryegrass Breeding Program.

Fè D, Ashraf BH, Pedersen MG, Janss L, Byrne S, Roulund N, Lenk I, Didion T, Asp T, Jensen CS, Jensen J.

Plant Genome. 2016 Nov;9(3). doi: 10.3835/plantgenome2015.11.0110.


Global transcriptome changes in perennial ryegrass during early infection by pink snow mould.

Kovi MR, Abdelhalim M, Kunapareddy A, Ergon Å, Tronsmo AM, Brurberg MB, Hofgaard IS, Asp T, Rognli OA.

Sci Rep. 2016 Jun 27;6:28702. doi: 10.1038/srep28702.


On the Accuracy of Genomic Selection.

Rabier CE, Barre P, Asp T, Charmet G, Mangin B.

PLoS One. 2016 Jun 20;11(6):e0156086. doi: 10.1371/journal.pone.0156086. eCollection 2016.


Transcriptome Analysis of an Insecticide Resistant Housefly Strain: Insights about SNPs and Regulatory Elements in Cytochrome P450 Genes.

Mahmood K, Højland DH, Asp T, Kristensen M.

PLoS One. 2016 Mar 28;11(3):e0151434. doi: 10.1371/journal.pone.0151434. eCollection 2016.


Using a Candidate Gene-Based Genetic Linkage Map to Identify QTL for Winter Survival in Perennial Ryegrass.

Paina C, Byrne SL, Studer B, Rognli OA, Asp T.

PLoS One. 2016 Mar 24;11(3):e0152004. doi: 10.1371/journal.pone.0152004. eCollection 2016.


In Silico Identification of Candidate Genes for Fertility Restoration in Cytoplasmic Male Sterile Perennial Ryegrass (Lolium perenne L.).

Sykes T, Yates S, Nagy I, Asp T, Small I, Studer B.

Genome Biol Evol. 2017 Feb 1;9(2):351-362. doi: 10.1093/gbe/evw047.


A Gene Encoding a DUF247 Domain Protein Cosegregates with the S Self-Incompatibility Locus in Perennial Ryegrass.

Manzanares C, Barth S, Thorogood D, Byrne SL, Yates S, Czaban A, Asp T, Yang B, Studer B.

Mol Biol Evol. 2016 Apr;33(4):870-84. doi: 10.1093/molbev/msv335. Epub 2015 Dec 10.


Population Structure, Genetic Variation, and Linkage Disequilibrium in Perennial Ryegrass Populations Divergently Selected for Freezing Tolerance.

Kovi MR, Fjellheim S, Sandve SR, Larsen A, Rudi H, Asp T, Kent MP, Rognli OA.

Front Plant Sci. 2015 Nov 12;6:929. doi: 10.3389/fpls.2015.00929. eCollection 2015.


Genomic dissection and prediction of heading date in perennial ryegrass.

Fè D, Cericola F, Byrne S, Lenk I, Ashraf BH, Pedersen MG, Roulund N, Asp T, Janss L, Jensen CS, Jensen J.

BMC Genomics. 2015 Nov 11;16:921. doi: 10.1186/s12864-015-2163-3.


Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions.

Abeynayake SW, Byrne S, Nagy I, Jonavičienė K, Etzerodt TP, Boelt B, Asp T.

BMC Plant Biol. 2015 Oct 17;15:250. doi: 10.1186/s12870-015-0643-x.


Identification and quantification of lichenysin - a possible source of food poisoning.

Rønning HT, Madslien EH, Asp TN, Granum PE.

Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2015;32(12):2120-30. doi: 10.1080/19440049.2015.1096967. Epub 2015 Oct 20.


A synteny-based draft genome sequence of the forage grass Lolium perenne.

Byrne SL, Nagy I, Pfeifer M, Armstead I, Swain S, Studer B, Mayer K, Campbell JD, Czaban A, Hentrup S, Panitz F, Bendixen C, Hedegaard J, Caccamo M, Asp T.

Plant J. 2015 Nov;84(4):816-26. doi: 10.1111/tpj.13037.


Estimating genomic heritabilities at the level of family-pool samples of perennial ryegrass using genotyping-by-sequencing.

Ashraf BH, Byrne S, Fé D, Czaban A, Asp T, Pedersen MG, Lenk I, Roulund N, Didion T, Jensen CS, Jensen J, Janss LL.

Theor Appl Genet. 2016 Jan;129(1):45-52. doi: 10.1007/s00122-015-2607-9. Epub 2015 Sep 25.


Fructan metabolism and changes in fructan composition during cold acclimation in perennial ryegrass.

Abeynayake SW, Etzerodt TP, Jonavičienė K, Byrne S, Asp T, Boelt B.

Front Plant Sci. 2015 May 12;6:329. doi: 10.3389/fpls.2015.00329. eCollection 2015.


Candidate gene association mapping for winter survival and spring regrowth in perennial ryegrass.

Yu X, Pijut PM, Byrne S, Asp T, Bai G, Jiang Y.

Plant Sci. 2015 Jun;235:37-45. doi: 10.1016/j.plantsci.2015.03.003. Epub 2015 Mar 11.


Comparative transcriptome analysis within the Lolium/Festuca species complex reveals high sequence conservation.

Czaban A, Sharma S, Byrne SL, Spannagl M, Mayer KF, Asp T.

BMC Genomics. 2015 Mar 28;16:249. doi: 10.1186/s12864-015-1447-y.


Determination and quantification of the emetic toxin cereulide from Bacillus cereus in pasta, rice and cream with liquid chromatography-tandem mass spectrometry.

Rønning HT, Asp TN, Granum PE.

Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2015;32(6):911-21. doi: 10.1080/19440049.2015.1022886. Epub 2015 Mar 20.


Clade classification of monolignol biosynthesis gene family members reveals target genes to decrease lignin in Lolium perenne.

van Parijs FR, Ruttink T, Boerjan W, Haesaert G, Byrne SL, Asp T, Roldán-Ruiz I, Muylle H.

Plant Biol (Stuttg). 2015 Jul;17(4):877-92. doi: 10.1111/plb.12316. Epub 2015 Mar 13.


Vernalization mediated changes in the Lolium perenne transcriptome.

Paina C, Byrne SL, Domnisoru C, Asp T.

PLoS One. 2014 Sep 16;9(9):e107365. doi: 10.1371/journal.pone.0107365. eCollection 2014.


De novo assembly of the perennial ryegrass transcriptome using an RNA-Seq strategy.

Farrell JD, Byrne S, Paina C, Asp T.

PLoS One. 2014 Aug 15;9(8):e103567. doi: 10.1371/journal.pone.0103567. eCollection 2014.


Association studies using family pools of outcrossing crops based on allele-frequency estimates from DNA sequencing.

Ashraf BH, Jensen J, Asp T, Janss LL.

Theor Appl Genet. 2014 Jun;127(6):1331-41. doi: 10.1007/s00122-014-2300-4. Epub 2014 Mar 26.


Flow sorting and sequencing meadow fescue chromosome 4F.

Kopecký D, Martis M, Číhalíková J, Hřibová E, Vrána J, Bartoš J, Kopecká J, Cattonaro F, Stočes Š, Novák P, Neumann P, Macas J, Šimková H, Studer B, Asp T, Baird JH, Navrátil P, Karafiátová M, Kubaláková M, Šafář J, Mayer K, Doležel J.

Plant Physiol. 2013 Nov;163(3):1323-37. doi: 10.1104/pp.113.224105. Epub 2013 Oct 4.


Evidence for adaptive evolution of low-temperature stress response genes in a Pooideae grass ancestor.

Vigeland MD, Spannagl M, Asp T, Paina C, Rudi H, Rognli OA, Fjellheim S, Sandve SR.

New Phytol. 2013 Sep;199(4):1060-8. doi: 10.1111/nph.12337. Epub 2013 May 23.


Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat.

Belova T, Zhan B, Wright J, Caccamo M, Asp T, Simková H, Kent M, Bendixen C, Panitz F, Lien S, Doležel J, Olsen OA, Sandve SR.

BMC Genomics. 2013 Apr 4;14:222. doi: 10.1186/1471-2164-14-222.


The genome and transcriptome of perennial ryegrass mitochondria.

Islam MS, Studer B, Byrne SL, Farrell JD, Panitz F, Bendixen C, Møller IM, Asp T.

BMC Genomics. 2013 Mar 23;14:202. doi: 10.1186/1471-2164-14-202.


Genome wide allele frequency fingerprints (GWAFFs) of populations via genotyping by sequencing.

Byrne S, Czaban A, Studer B, Panitz F, Bendixen C, Asp T.

PLoS One. 2013;8(3):e57438. doi: 10.1371/journal.pone.0057438. Epub 2013 Mar 4.


Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne.

Ruttink T, Sterck L, Rohde A, Bendixen C, Rouzé P, Asp T, Van de Peer Y, Roldan-Ruiz I.

Plant Biotechnol J. 2013 Jun;11(5):605-17. doi: 10.1111/pbi.12051. Epub 2013 Feb 21.


The perennial ryegrass GenomeZipper: targeted use of genome resources for comparative grass genomics.

Pfeifer M, Martis M, Asp T, Mayer KF, Lübberstedt T, Byrne S, Frei U, Studer B.

Plant Physiol. 2013 Feb;161(2):571-82. doi: 10.1104/pp.112.207282. Epub 2012 Nov 26.


The Tr-cp 14 cysteine protease in white clover (Trifolium repens) is localized to the endoplasmic reticulum and is associated with programmed cell death during development of tracheary elements.

Mulisch M, Asp T, Krupinska K, Hollmann J, Holm PB.

Protoplasma. 2013 Apr;250(2):623-9. doi: 10.1007/s00709-012-0427-1. Epub 2012 Jun 17.


A transcriptome map of perennial ryegrass (Lolium perenne L.).

Studer B, Byrne S, Nielsen RO, Panitz F, Bendixen C, Islam MS, Pfeifer M, Lübberstedt T, Asp T.

BMC Genomics. 2012 Apr 18;13:140. doi: 10.1186/1471-2164-13-140.


Comparative sequence analysis of VRN1 alleles of Lolium perenne with the co-linear regions in barley, wheat, and rice.

Asp T, Byrne S, Gundlach H, Bruggmann R, Mayer KF, Andersen JR, Xu M, Greve M, Lenk I, Lübberstedt T.

Mol Genet Genomics. 2011 Dec;286(5-6):433-47. doi: 10.1007/s00438-011-0654-8. Epub 2011 Nov 12.


Uptake and translocation of metformin, ciprofloxacin and narasin in forage- and crop plants.

Eggen T, Asp TN, Grave K, Hormazabal V.

Chemosphere. 2011 Sep;85(1):26-33. doi: 10.1016/j.chemosphere.2011.06.041. Epub 2011 Jul 14.


Allelic variation in the perennial ryegrass FLOWERING LOCUS T gene is associated with changes in flowering time across a range of populations.

Skøt L, Sanderson R, Thomas A, Skøt K, Thorogood D, Latypova G, Asp T, Armstead I.

Plant Physiol. 2011 Feb;155(2):1013-22. doi: 10.1104/pp.110.169870. Epub 2010 Nov 29.


Transcriptional responses of Italian ryegrass during interaction with Xanthomonas translucens pv. graminis reveal novel candidate genes for bacterial wilt resistance.

Wichmann F, Asp T, Widmer F, Kölliker R.

Theor Appl Genet. 2011 Feb;122(3):567-79. doi: 10.1007/s00122-010-1470-y. Epub 2010 Oct 26.


EST-derived SSR markers used as anchor loci for the construction of a consensus linkage map in ryegrass (Lolium spp.).

Studer B, Kölliker R, Muylle H, Asp T, Frei U, Roldán-Ruiz I, Barre P, Tomaszewski C, Meally H, Barth S, Skøt L, Armstead IP, Dolstra O, Lübberstedt T.

BMC Plant Biol. 2010 Aug 16;10:177. doi: 10.1186/1471-2229-10-177.


Determination of cyclopiazonic acid in food and feeds by liquid chromatography-tandem mass spectrometry.

Moldes-Anaya AS, Asp TN, Eriksen GS, Skaar I, Rundberget T.

J Chromatogr A. 2009 May 1;1216(18):3812-8. doi: 10.1016/j.chroma.2009.02.061. Epub 2009 Feb 26.


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