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Items: 36

1.

Syndromic Surveillance of Emergency Department Visits for Acute Adverse Effects of Marijuana, Tri-County Health Department, Colorado, 2016-2017.

Marx GE, Chen Y, Askenazi M, Albanese BA.

Public Health Rep. 2019 Mar/Apr;134(2):132-140. doi: 10.1177/0033354919826562. Epub 2019 Feb 5.

PMID:
30721641
2.

Affinity purification mass spectrometry analysis of PD-1 uncovers SAP as a new checkpoint inhibitor.

Peled M, Tocheva AS, Sandigursky S, Nayak S, Philips EA, Nichols KE, Strazza M, Azoulay-Alfaguter I, Askenazi M, Neel BG, Pelzek AJ, Ueberheide B, Mor A.

Proc Natl Acad Sci U S A. 2018 Jan 16;115(3):E468-E477. doi: 10.1073/pnas.1710437115. Epub 2017 Dec 27.

3.

Public Health Economic Burden Associated with Two Single Measles Case Investigations - Colorado, 2016-2017.

Marx GE, Chase J, Jasperse J, Stinson K, McDonald CE, Runfola JK, Jaskunas J, Hite D, Barnes M, Askenazi M, Albanese B.

MMWR Morb Mortal Wkly Rep. 2017 Nov 24;66(46):1272-1275. doi: 10.15585/mmwr.mm6646a3.

4.

Validation of a Syndromic Case Definition for Detecting Emergency Department Visits Potentially Related to Marijuana.

DeYoung K, Chen Y, Beum R, Askenazi M, Zimmerman C, Davidson AJ.

Public Health Rep. 2017 Jul/Aug;132(4):471-479. doi: 10.1177/0033354917708987. Epub 2017 Jun 6.

5.

Proteomic differences in amyloid plaques in rapidly progressive and sporadic Alzheimer's disease.

Drummond E, Nayak S, Faustin A, Pires G, Hickman RA, Askenazi M, Cohen M, Haldiman T, Kim C, Han X, Shao Y, Safar JG, Ueberheide B, Wisniewski T.

Acta Neuropathol. 2017 Jun;133(6):933-954. doi: 10.1007/s00401-017-1691-0. Epub 2017 Mar 4.

6.

Using Quantitative Spectrometry to Understand the Influence of Genetics and Nutritional Perturbations On the Virulence Potential of Staphylococcus aureus.

Chapman JR, Balasubramanian D, Tam K, Askenazi M, Copin R, Shopsin B, Torres VJ, Ueberheide BM.

Mol Cell Proteomics. 2017 Apr;16(4 suppl 1):S15-S28. doi: 10.1074/mcp.O116.065581. Epub 2017 Feb 14.

7.

The arc of Mass Spectrometry Exchange Formats is long, but it bends toward HDF5.

Askenazi M, Ben Hamidane H, Graumann J.

Mass Spectrom Rev. 2017 Sep;36(5):668-673. doi: 10.1002/mas.21522. Epub 2016 Oct 14. Review.

8.

OpenSlice: Quantitative data sharing from HyperPeaks to global ion chromatograms (GICs).

Askenazi M, Fenyö D.

Proteomics. 2016 Sep;16(18):2495-501. doi: 10.1002/pmic.201600096.

PMID:
27436706
9.

PGx: Putting Peptides to BED.

Askenazi M, Ruggles KV, Fenyö D.

J Proteome Res. 2016 Mar 4;15(3):795-9. doi: 10.1021/acs.jproteome.5b00870. Epub 2015 Dec 18.

10.

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.

Ruggles KV, Tang Z, Wang X, Grover H, Askenazi M, Teubl J, Cao S, McLellan MD, Clauser KR, Tabb DL, Mertins P, Slebos R, Erdmann-Gilmore P, Li S, Gunawardena HP, Xie L, Liu T, Zhou JY, Sun S, Hoadley KA, Perou CM, Chen X, Davies SR, Maher CA, Kinsinger CR, Rodland KD, Zhang H, Zhang Z, Ding L, Townsend RR, Rodriguez H, Chan D, Smith RD, Liebler DC, Carr SA, Payne S, Ellis MJ, Fenyő D.

Mol Cell Proteomics. 2016 Mar;15(3):1060-71. doi: 10.1074/mcp.M115.056226. Epub 2015 Dec 2.

11.

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.

Villaveces JM, Jiménez RC, Porras P, Del-Toro N, Duesbury M, Dumousseau M, Orchard S, Choi H, Ping P, Zong NC, Askenazi M, Habermann BH, Hermjakob H.

Database (Oxford). 2015 Feb 4;2015. pii: bau131. doi: 10.1093/database/bau131. Print 2015.

12.

Protected amine labels: a versatile molecular scaffold for multiplexed nominal mass and sub-Da isotopologue quantitative proteomic reagents.

Ficarro SB, Biagi JM, Wang J, Scotcher J, Koleva RI, Card JD, Adelmant G, He H, Askenazi M, Marshall AG, Young NL, Gray NS, Marto JA.

J Am Soc Mass Spectrom. 2014 Apr;25(4):636-50. doi: 10.1007/s13361-013-0811-x. Epub 2014 Feb 5.

13.

Library dependent LC-MS/MS acquisition via mzAPI/Live.

Webber JT, Askenazi M, Ficarro SB, Iglehart MA, Marto JA.

Proteomics. 2013 May;13(9):1412-6. doi: 10.1002/pmic.201200583.

14.

Short toxin-like proteins abound in Cnidaria genomes.

Tirosh Y, Linial I, Askenazi M, Linial M.

Toxins (Basel). 2012 Nov 16;4(11):1367-84. doi: 10.3390/toxins4111367.

15.

Implicit biology in peptide spectral libraries.

Askenazi M, Linial M.

Anal Chem. 2012 Sep 18;84(18):7919-25. doi: 10.1021/ac301674y. Epub 2012 Aug 31.

PMID:
22909014
16.

Proteomic analysis demonstrates activator- and chromatin-specific recruitment to promoters.

Sikorski TW, Joo YJ, Ficarro SB, Askenazi M, Buratowski S, Marto JA.

J Biol Chem. 2012 Oct 12;287(42):35397-408. doi: 10.1074/jbc.M112.391581. Epub 2012 Aug 17.

17.

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins.

Rozenblatt-Rosen O, Deo RC, Padi M, Adelmant G, Calderwood MA, Rolland T, Grace M, Dricot A, Askenazi M, Tavares M, Pevzner SJ, Abderazzaq F, Byrdsong D, Carvunis AR, Chen AA, Cheng J, Correll M, Duarte M, Fan C, Feltkamp MC, Ficarro SB, Franchi R, Garg BK, Gulbahce N, Hao T, Holthaus AM, James R, Korkhin A, Litovchick L, Mar JC, Pak TR, Rabello S, Rubio R, Shen Y, Singh S, Spangle JM, Tasan M, Wanamaker S, Webber JT, Roecklein-Canfield J, Johannsen E, Barabási AL, Beroukhim R, Kieff E, Cusick ME, Hill DE, Münger K, Marto JA, Quackenbush J, Roth FP, DeCaprio JA, Vidal M.

Nature. 2012 Jul 26;487(7408):491-5. doi: 10.1038/nature11288.

18.

Quantitative assessment of whole-body tumor burden in adult patients with neurofibromatosis.

Plotkin SR, Bredella MA, Cai W, Kassarjian A, Harris GJ, Esparza S, Merker VL, Munn LL, Muzikansky A, Askenazi M, Nguyen R, Wenzel R, Mautner VF.

PLoS One. 2012;7(4):e35711. doi: 10.1371/journal.pone.0035711. Epub 2012 Apr 27.

19.

DNA ends alter the molecular composition and localization of Ku multicomponent complexes.

Adelmant G, Calkins AS, Garg BK, Card JD, Askenazi M, Miron A, Sobhian B, Zhang Y, Nakatani Y, Silver PA, Iglehart JD, Marto JA, Lazaro JB.

Mol Cell Proteomics. 2012 Aug;11(8):411-21. doi: 10.1074/mcp.M111.013581. Epub 2012 Apr 24.

20.

Delayed fragmentation and optimized isolation width settings for improvement of protein identification and accuracy of isobaric mass tag quantification on Orbitrap-type mass spectrometers.

Savitski MM, Sweetman G, Askenazi M, Marto JA, Lang M, Zinn N, Bantscheff M.

Anal Chem. 2011 Dec 1;83(23):8959-67. doi: 10.1021/ac201760x. Epub 2011 Nov 4.

PMID:
22017476
21.

ARISTO: ontological classification of small molecules by electron ionization-mass spectrometry.

Askenazi M, Linial M.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W505-10. doi: 10.1093/nar/gkr403. Epub 2011 May 27.

22.

mzServer: web-based programmatic access for mass spectrometry data analysis.

Askenazi M, Webber JT, Marto JA.

Mol Cell Proteomics. 2011 May;10(5):M110.003988. doi: 10.1074/mcp.M110.003988. Epub 2011 Jan 25.

23.

mzResults: an interactive viewer for interrogation and distribution of proteomics results.

Webber JT, Askenazi M, Marto JA.

Mol Cell Proteomics. 2011 May;10(5):M110.003970. doi: 10.1074/mcp.M110.003970. Epub 2011 Jan 25.

24.

The complete peptide dictionary--a meta-proteomics resource.

Askenazi M, Marto JA, Linial M.

Proteomics. 2010 Dec;10(23):4306-10. doi: 10.1002/pmic.201000270.

PMID:
21082763
25.

A QUICK screen for Lrrk2 interaction partners--leucine-rich repeat kinase 2 is involved in actin cytoskeleton dynamics.

Meixner A, Boldt K, Van Troys M, Askenazi M, Gloeckner CJ, Bauer M, Marto JA, Ampe C, Kinkl N, Ueffing M.

Mol Cell Proteomics. 2011 Jan;10(1):M110.001172. doi: 10.1074/mcp.M110.001172. Epub 2010 Sep 27.

26.

A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes.

Naamati G, Askenazi M, Linial M.

Bioinformatics. 2010 Sep 15;26(18):i482-8. doi: 10.1093/bioinformatics/btq375.

27.

Pathway Palette: a rich internet application for peptide-, protein- and network-oriented analysis of MS data.

Askenazi M, Li S, Singh S, Marto JA.

Proteomics. 2010 May;10(9):1880-5. doi: 10.1002/pmic.200900723.

28.

A robust error model for iTRAQ quantification reveals divergent signaling between oncogenic FLT3 mutants in acute myeloid leukemia.

Zhang Y, Askenazi M, Jiang J, Luckey CJ, Griffin JD, Marto JA.

Mol Cell Proteomics. 2010 May;9(5):780-90. doi: 10.1074/mcp.M900452-MCP200. Epub 2009 Dec 17.

29.

multiplierz: an extensible API based desktop environment for proteomics data analysis.

Parikh JR, Askenazi M, Ficarro SB, Cashorali T, Webber JT, Blank NC, Zhang Y, Marto JA.

BMC Bioinformatics. 2009 Oct 29;10:364. doi: 10.1186/1471-2105-10-364.

30.

ClanTox: a classifier of short animal toxins.

Naamati G, Askenazi M, Linial M.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W363-8. doi: 10.1093/nar/gkp299. Epub 2009 May 8.

31.

mzAPI: a new strategy for efficiently sharing mass spectrometry data.

Askenazi M, Parikh JR, Marto JA.

Nat Methods. 2009 Apr;6(4):240-1. doi: 10.1038/nmeth0409-240. No abstract available.

32.

Improved electrospray ionization efficiency compensates for diminished chromatographic resolution and enables proteomics analysis of tyrosine signaling in embryonic stem cells.

Ficarro SB, Zhang Y, Lu Y, Moghimi AR, Askenazi M, Hyatt E, Smith ED, Boyer L, Schlaeger TM, Luckey CJ, Marto JA.

Anal Chem. 2009 May 1;81(9):3440-7. doi: 10.1021/ac802720e.

PMID:
19331382
33.

Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains.

Askenazi M, Driggers EM, Holtzman DA, Norman TC, Iverson S, Zimmer DP, Boers ME, Blomquist PR, Martinez EJ, Monreal AW, Feibelman TP, Mayorga ME, Maxon ME, Sykes K, Tobin JV, Cordero E, Salama SR, Trueheart J, Royer JC, Madden KT.

Nat Biotechnol. 2003 Feb;21(2):150-6. Epub 2003 Jan 21.

PMID:
12536215
34.

Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.

Goodner B, Hinkle G, Gattung S, Miller N, Blanchard M, Qurollo B, Goldman BS, Cao Y, Askenazi M, Halling C, Mullin L, Houmiel K, Gordon J, Vaudin M, Iartchouk O, Epp A, Liu F, Wollam C, Allinger M, Doughty D, Scott C, Lappas C, Markelz B, Flanagan C, Crowell C, Gurson J, Lomo C, Sear C, Strub G, Cielo C, Slater S.

Science. 2001 Dec 14;294(5550):2323-8.

35.

Community dynamics: what happens when we rerun the tape?

Savage M, Sawhill B, Askenazi M.

J Theor Biol. 2000 Aug 21;205(4):515-26.

PMID:
10931749
36.

Cluster analysis and data visualization of large-scale gene expression data.

Michaels GS, Carr DB, Askenazi M, Fuhrman S, Wen X, Somogyi R.

Pac Symp Biocomput. 1998:42-53.

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