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Items: 1 to 50 of 110

1.

Correction to: Sucrose affects the developmental transition of rhizomes in Oryza longistaminata.

Bessho-Uehara K, Nugroho JE, Kondo H, Angeles-Shim RB, Ashikari M.

J Plant Res. 2019 Apr 29. doi: 10.1007/s10265-019-01112-y. [Epub ahead of print]

PMID:
31037514
2.

Fundus autofluorescence and retinal sensitivity in fellow eyes of age-related macular degeneration in Japan.

Yasukawa T, Mori R, Sawa M, Shinojima A, Hara C, Sekiryu T, Oshima Y, Saito M, Sugano Y, Kato A, Ashikari M, Hirano Y, Asato H, Nakamura M, Matsuno K, Kuno N, Kimura E, Nishiyama T, Yuzawa M, Ishibashi T, Ogura Y, Iida T, Gomi F.

PLoS One. 2019 Feb 28;14(2):e0213161. doi: 10.1371/journal.pone.0213161. eCollection 2019.

3.

Diel O2 Dynamics in Partially and Completely Submerged Deepwater Rice: Leaf Gas Films Enhance Internodal O2 Status, Influence Gene Expression and Accelerate Stem Elongation for 'Snorkelling' during Submergence.

Mori Y, Kurokawa Y, Koike M, Malik AI, Colmer TD, Ashikari M, Pedersen O, Nagai K.

Plant Cell Physiol. 2019 May 1;60(5):973-985. doi: 10.1093/pcp/pcz009.

PMID:
30668838
4.

Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species.

Reuscher S, Furuta T, Bessho-Uehara K, Cosi M, Jena KK, Toyoda A, Fujiyama A, Kurata N, Ashikari M.

Commun Biol. 2018 Oct 5;1:162. doi: 10.1038/s42003-018-0171-y. eCollection 2018.

5.

Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.

Kuroha T, Nagai K, Gamuyao R, Wang DR, Furuta T, Nakamori M, Kitaoka T, Adachi K, Minami A, Mori Y, Mashiguchi K, Seto Y, Yamaguchi S, Kojima M, Sakakibara H, Wu J, Ebana K, Mitsuda N, Ohme-Takagi M, Yanagisawa S, Yamasaki M, Yokoyama R, Nishitani K, Mochizuki T, Tamiya G, McCouch SR, Ashikari M.

Science. 2018 Jul 13;361(6398):181-186. doi: 10.1126/science.aat1577.

PMID:
30002253
6.

Sucrose affects the developmental transition of rhizomes in Oryza longistaminata.

Bessho-Uehara K, Nugroho JE, Kondo H, Angeles-Shim RB, Ashikari M.

J Plant Res. 2018 Jul;131(4):693-707. doi: 10.1007/s10265-018-1033-x. Epub 2018 May 8. Erratum in: J Plant Res. 2019 Apr 29;:.

7.

Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.

Kurokawa Y, Nagai K, Huan PD, Shimazaki K, Qu H, Mori Y, Toda Y, Kuroha T, Hayashi N, Aiga S, Itoh JI, Yoshimura A, Sasaki-Sekimoto Y, Ohta H, Shimojima M, Malik AI, Pedersen O, Colmer TD, Ashikari M.

New Phytol. 2018 Jun;218(4):1558-1569. doi: 10.1111/nph.15070. Epub 2018 Mar 2.

8.

Introgression of a functional epigenetic OsSPL14WFP allele into elite indica rice genomes greatly improved panicle traits and grain yield.

Kim SR, Ramos JM, Hizon RJM, Ashikari M, Virk PS, Torres EA, Nissila E, Jena KK.

Sci Rep. 2018 Mar 1;8(1):3833. doi: 10.1038/s41598-018-21355-4.

9.

Time-Course Transcriptomics Analysis Reveals Key Responses of Submerged Deepwater Rice to Flooding.

Minami A, Yano K, Gamuyao R, Nagai K, Kuroha T, Ayano M, Nakamori M, Koike M, Kondo Y, Niimi Y, Kuwata K, Suzuki T, Higashiyama T, Takebayashi Y, Kojima M, Sakakibara H, Toyoda A, Fujiyama A, Kurata N, Ashikari M, Reuscher S.

Plant Physiol. 2018 Apr;176(4):3081-3102. doi: 10.1104/pp.17.00858. Epub 2018 Feb 23.

10.

Construction of rice chromosome segment substitution lines harboring Oryza barthii genome and evaluation of yield-related traits.

Bessho-Uehara K, Furuta T, Masuda K, Yamada S, Angeles-Shim RB, Ashikari M, Takashi T.

Breed Sci. 2017 Sep;67(4):408-415. doi: 10.1270/jsbbs.17022. Epub 2017 Aug 11.

11.

eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater Rice.

Kuroha T, Nagai K, Kurokawa Y, Nagamura Y, Kusano M, Yasui H, Ashikari M, Fukushima A.

Front Plant Sci. 2017 Oct 13;8:1753. doi: 10.3389/fpls.2017.01753. eCollection 2017.

12.

A new outlook on sporadic flowering of bamboo.

Gamuyao R, Nagai K, Ashikari M, Reuscher S.

Plant Signal Behav. 2017 Jul 3;12(7):e1343780. doi: 10.1080/15592324.2017.1343780. Epub 2017 Jun 26.

13.

Community recommendations on terminology and procedures used in flooding and low oxygen stress research.

Sasidharan R, Bailey-Serres J, Ashikari M, Atwell BJ, Colmer TD, Fagerstedt K, Fukao T, Geigenberger P, Hebelstrup KH, Hill RD, Holdsworth MJ, Ismail AM, Licausi F, Mustroph A, Nakazono M, Pedersen O, Perata P, Sauter M, Shih MC, Sorrell BK, Striker GG, van Dongen JT, Whelan J, Xiao S, Visser EJW, Voesenek LACJ.

New Phytol. 2017 Jun;214(4):1403-1407. doi: 10.1111/nph.14519. Epub 2017 Mar 9. No abstract available.

14.

Hormone Distribution and Transcriptome Profiles in Bamboo Shoots Provide Insights on Bamboo Stem Emergence and Growth.

Gamuyao R, Nagai K, Ayano M, Mori Y, Minami A, Kojima M, Suzuki T, Sakakibara H, Higashiyama T, Ashikari M, Reuscher S.

Plant Cell Physiol. 2017 Apr 1;58(4):702-716. doi: 10.1093/pcp/pcx023.

PMID:
28204696
15.

Development of chromosome segment substitution lines harboring Oryza nivara genomic segments in Koshihikari and evaluation of yield-related traits.

Furuta T, Uehara K, Angeles-Shim RB, Shim J, Nagai K, Ashikari M, Takashi T.

Breed Sci. 2016 Dec;66(5):845-850. doi: 10.1270/jsbbs.16131. Epub 2016 Dec 6.

16.

Adapting Genotyping-by-Sequencing for Rice F2 Populations.

Furuta T, Ashikari M, Jena KK, Doi K, Reuscher S.

G3 (Bethesda). 2017 Mar 10;7(3):881-893. doi: 10.1534/g3.116.038190.

17.

A single base change explains the independent origin of and selection for the nonshattering gene in African rice domestication.

Win KT, Yamagata Y, Doi K, Uyama K, Nagai Y, Toda Y, Kani T, Ashikari M, Yasui H, Yoshimura A.

New Phytol. 2017 Mar;213(4):1925-1935. doi: 10.1111/nph.14290. Epub 2016 Nov 12.

18.

Analysis of Rhizome Development in Oryza longistaminata, a Wild Rice Species.

Yoshida A, Terada Y, Toriba T, Kose K, Ashikari M, Kyozuka J.

Plant Cell Physiol. 2016 Oct;57(10):2213-2220. Epub 2016 Aug 11.

PMID:
27516415
19.

Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.

Bessho-Uehara K, Wang DR, Furuta T, Minami A, Nagai K, Gamuyao R, Asano K, Angeles-Shim RB, Shimizu Y, Ayano M, Komeda N, Doi K, Miura K, Toda Y, Kinoshita T, Okuda S, Higashiyama T, Nomoto M, Tada Y, Shinohara H, Matsubayashi Y, Greenberg A, Wu J, Yasui H, Yoshimura A, Mori H, McCouch SR, Ashikari M.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):8969-74. doi: 10.1073/pnas.1604849113. Epub 2016 Jul 27.

20.

Detection of Novel QTLs Regulating Grain Size in Extra-Large Grain Rice (Oryza sativa L.) Lines.

Segami S, Yamamoto T, Oki K, Noda T, Kanamori H, Sasaki H, Mori S, Ashikari M, Kitano H, Katayose Y, Iwasaki Y, Miura K.

Rice (N Y). 2016 Dec;9(1):34. doi: 10.1186/s12284-016-0109-2. Epub 2016 Jul 25.

21.

Oryza sativa H+-ATPase (OSA) is Involved in the Regulation of Dumbbell-Shaped Guard Cells of Rice.

Toda Y, Wang Y, Takahashi A, Kawai Y, Tada Y, Yamaji N, Feng Ma J, Ashikari M, Kinoshita T.

Plant Cell Physiol. 2016 Jun;57(6):1220-30. doi: 10.1093/pcp/pcw070. Epub 2016 Apr 5.

22.

Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.

Kim SR, Ramos J, Ashikari M, Virk PS, Torres EA, Nissila E, Hechanova SL, Mauleon R, Jena KK.

Rice (N Y). 2016 Dec;9(1):12. doi: 10.1186/s12284-016-0084-7. Epub 2016 Mar 18.

23.

Construction of a versatile SNP array for pyramiding useful genes of rice.

Kurokawa Y, Noda T, Yamagata Y, Angeles-Shim R, Sunohara H, Uehara K, Furuta T, Nagai K, Jena KK, Yasui H, Yoshimura A, Ashikari M, Doi K.

Plant Sci. 2016 Jan;242:131-139. doi: 10.1016/j.plantsci.2015.09.008. Epub 2015 Sep 10.

24.

Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.

Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.

Mol Plant. 2016 Feb 1;9(2):221-232. doi: 10.1016/j.molp.2015.09.014. Epub 2015 Oct 9.

25.

Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci.

Furuta T, Komeda N, Asano K, Uehara K, Gamuyao R, Angeles-Shim RB, Nagai K, Doi K, Wang DR, Yasui H, Yoshimura A, Wu J, McCouch SR, Ashikari M.

G3 (Bethesda). 2015 Sep 2;5(11):2267-74. doi: 10.1534/g3.115.020834.

26.

Exploring the power of plants to overcome environmental stresses.

Ashikari M, Ma JF.

Rice (N Y). 2015 Feb 12;8:10. doi: 10.1186/s12284-014-0037-y. eCollection 2015. No abstract available.

27.

Short pulse laser induces less inflammatory cytokines in the murine retina after laser photocoagulation.

Ito A, Hirano Y, Nozaki M, Ashikari M, Sugitani K, Ogura Y.

Ophthalmic Res. 2015;53(2):65-73. doi: 10.1159/000366520. Epub 2015 Jan 7.

PMID:
25572382
28.

Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice.

Song XJ, Kuroha T, Ayano M, Furuta T, Nagai K, Komeda N, Segami S, Miura K, Ogawa D, Kamura T, Suzuki T, Higashiyama T, Yamasaki M, Mori H, Inukai Y, Wu J, Kitano H, Sakakibara H, Jacobsen SE, Ashikari M.

Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):76-81. doi: 10.1073/pnas.1421127112. Epub 2014 Dec 22.

29.

A mathematical model of phloem sucrose transport as a new tool for designing rice panicle structure for high grain yield.

Seki M, Feugier FG, Song XJ, Ashikari M, Nakamura H, Ishiyama K, Yamaya T, Inari-Ikeda M, Kitano H, Satake A.

Plant Cell Physiol. 2015 Apr;56(4):605-19. doi: 10.1093/pcp/pcu191. Epub 2014 Dec 15.

PMID:
25516572
30.

QTL analysis of internode elongation in response to gibberellin in deepwater rice.

Nagai K, Kondo Y, Kitaoka T, Noda T, Kuroha T, Angeles-Shim RB, Yasui H, Yoshimura A, Ashikari M.

AoB Plants. 2014 Jun 19;6. pii: plu028. doi: 10.1093/aobpla/plu028.

31.

Gibberellin biosynthesis and signal transduction is essential for internode elongation in deepwater rice.

Ayano M, Kani T, Kojima M, Sakakibara H, Kitaoka T, Kuroha T, Angeles-Shim RB, Kitano H, Nagai K, Ashikari M.

Plant Cell Environ. 2014 Oct;37(10):2313-24. doi: 10.1111/pce.12377. Epub 2014 Jun 24.

32.

Development and evaluation of chromosome segment substitution lines (CSSLs) carrying chromosome segments derived from Oryza rufipogon in the genetic background of Oryza sativa L.

Furuta T, Uehara K, Angeles-Shim RB, Shim J, Ashikari M, Takashi T.

Breed Sci. 2014 Mar;63(5):468-75. doi: 10.1270/jsbbs.63.468. Epub 2014 Mar 1.

33.

Efficient delivery of siRNA by atelocollagen in a murine laser-induced choroidal neovascularization model.

Ito Y, Nozaki M, Sugitani K, Ashikari M, Hirano Y, Ogura Y.

Ophthalmologica. 2013;230(4):215-21. doi: 10.1159/000354092. Epub 2013 Sep 25.

PMID:
24080835
34.

OsLG1 regulates a closed panicle trait in domesticated rice.

Ishii T, Numaguchi K, Miura K, Yoshida K, Thanh PT, Htun TM, Yamasaki M, Komeda N, Matsumoto T, Terauchi R, Ishikawa R, Ashikari M.

Nat Genet. 2013 Apr;45(4):462-5, 465e1-2. doi: 10.1038/ng.2567. Epub 2013 Feb 24.

PMID:
23435087
35.

Suppression of laser-induced choroidal neovascularization by a CCR3 antagonist.

Mizutani T, Ashikari M, Tokoro M, Nozaki M, Ogura Y.

Invest Ophthalmol Vis Sci. 2013 Feb 28;54(2):1564-72. doi: 10.1167/iovs.11-9095.

PMID:
23404125
36.

A WUSCHEL-related homeobox 3B gene, depilous (dep), confers glabrousness of rice leaves and glumes.

Angeles-Shim RB, Asano K, Takashi T, Shim J, Kuroha T, Ayano M, Ashikari M.

Rice (N Y). 2012 Dec;5(1):28. doi: 10.1186/1939-8433-5-28. Epub 2012 Oct 2.

37.

Two novel QTLs regulate internode elongation in deepwater rice during the early vegetative stage.

Nagai K, Kuroha T, Ayano M, Kurokawa Y, Angeles-Shim RB, Shim JH, Yasui H, Yoshimura A, Ashikari M.

Breed Sci. 2012 Jun;62(2):178-85. doi: 10.1270/jsbbs.62.178. Epub 2012 Jun 19.

38.

Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways.

Luo L, Li W, Miura K, Ashikari M, Kyozuka J.

Plant Cell Physiol. 2012 Oct;53(10):1793-801. doi: 10.1093/pcp/pcs122. Epub 2012 Sep 7.

PMID:
22960246
39.

DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem.

Sato-Izawa K, Nakaba S, Tamura K, Yamagishi Y, Nakano Y, Nishikubo N, Kawai S, Kajita S, Ashikari M, Funada R, Katayama Y, Kitano H.

Plant Cell Environ. 2012 Nov;35(11):2031-44. doi: 10.1111/j.1365-3040.2012.02534.x. Epub 2012 Jun 7.

40.

Artificial selection for a green revolution gene during japonica rice domestication.

Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M.

Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):11034-9. doi: 10.1073/pnas.1019490108. Epub 2011 Jun 6.

41.

The role of QTLs in the breeding of high-yielding rice.

Miura K, Ashikari M, Matsuoka M.

Trends Plant Sci. 2011 Jun;16(6):319-26. doi: 10.1016/j.tplants.2011.02.009. Epub 2011 Mar 21. Review.

PMID:
21429786
42.

Vacuolar proton pumps and aquaporins involved in rapid internode elongation of deepwater rice.

Muto Y, Segami S, Hayashi H, Sakurai J, Murai-Hatano M, Hattori Y, Ashikari M, Maeshima M.

Biosci Biotechnol Biochem. 2011;75(1):114-22. Epub 2011 Jan 7.

43.

Rice growth adapting to deepwater.

Hattori Y, Nagai K, Ashikari M.

Curr Opin Plant Biol. 2011 Feb;14(1):100-5. doi: 10.1016/j.pbi.2010.09.008. Epub 2010 Oct 8.

PMID:
20934370
44.

OsSPL14 promotes panicle branching and higher grain productivity in rice.

Miura K, Ikeda M, Matsubara A, Song XJ, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M.

Nat Genet. 2010 Jun;42(6):545-9. doi: 10.1038/ng.592. Epub 2010 May 23.

PMID:
20495564
45.

Stunt or elongate? Two opposite strategies by which rice adapts to floods.

Nagai K, Hattori Y, Ashikari M.

J Plant Res. 2010 May;123(3):303-9. doi: 10.1007/s10265-010-0332-7. Epub 2010 Mar 31.

PMID:
20354754
46.

SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice.

Asano K, Miyao A, Hirochika H, Kitano H, Matsuoka M, Ashikari M.

Proc Jpn Acad Ser B Phys Biol Sci. 2010;86(3):265-73.

47.

Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice.

Yamamoto E, Takashi T, Morinaka Y, Lin S, Wu J, Matsumoto T, Kitano H, Matsuoka M, Ashikari M.

Mol Genet Genomics. 2010 Apr;283(4):305-15. doi: 10.1007/s00438-010-0514-y. Epub 2010 Feb 6.

PMID:
20140455
48.

Suppression of laser-induced choroidal neovascularization by nontargeted siRNA.

Ashikari M, Tokoro M, Itaya M, Nozaki M, Ogura Y.

Invest Ophthalmol Vis Sci. 2010 Jul;51(7):3820-4. doi: 10.1167/iovs.09-5121. Epub 2010 Feb 3.

PMID:
20130283
49.

Mitochondrial gene in the nuclear genome induces reproductive barrier in rice.

Yamagata Y, Yamamoto E, Aya K, Win KT, Doi K, Sobrizal, Ito T, Kanamori H, Wu J, Matsumoto T, Matsuoka M, Ashikari M, Yoshimura A.

Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1494-9. doi: 10.1073/pnas.0908283107. Epub 2010 Jan 4.

50.

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water.

Hattori Y, Nagai K, Furukawa S, Song XJ, Kawano R, Sakakibara H, Wu J, Matsumoto T, Yoshimura A, Kitano H, Matsuoka M, Mori H, Ashikari M.

Nature. 2009 Aug 20;460(7258):1026-30. doi: 10.1038/nature08258.

PMID:
19693083

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