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Items: 1 to 50 of 138


A comprehensive knowledge base of synaptic electrophysiology in the rodent hippocampal formation.

Moradi K, Ascoli GA.

Hippocampus. 2019 Aug 31. doi: 10.1002/hipo.23148. [Epub ahead of print]


Cell numbers, distribution, shape, and regional variation throughout the murine hippocampal formation from the adult brain Allen Reference Atlas.

Attili SM, Silva MFM, Nguyen TV, Ascoli GA.

Brain Struct Funct. 2019 Aug 23. doi: 10.1007/s00429-019-01940-7. [Epub ahead of print]


Neuron Names: A Gene- and Property-Based Name Format, With Special Reference to Cortical Neurons.

Shepherd GM, Marenco L, Hines ML, Migliore M, McDougal RA, Carnevale NT, Newton AJH, Surles-Zeigler M, Ascoli GA.

Front Neuroanat. 2019 Mar 21;13:25. doi: 10.3389/fnana.2019.00025. eCollection 2019.


Genetic Single Neuron Anatomy Reveals Fine Granularity of Cortical Axo-Axonic Cells.

Wang X, Tucciarone J, Jiang S, Yin F, Wang BS, Wang D, Jia Y, Jia X, Li Y, Yang T, Xu Z, Akram MA, Wang Y, Zeng S, Ascoli GA, Mitra P, Gong H, Luo Q, Huang ZJ.

Cell Rep. 2019 Mar 12;26(11):3145-3159.e5. doi: 10.1016/j.celrep.2019.02.040.


PaperBot: open-source web-based search and metadata organization of scientific literature.

Maraver P, Armañanzas R, Gillette TA, Ascoli GA.

BMC Bioinformatics. 2019 Jan 24;20(1):50. doi: 10.1186/s12859-019-2613-z.


Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types.

Venkadesh S, Komendantov AO, Listopad S, Scott EO, De Jong K, Krichmar JL, Ascoli GA.

Front Neuroinform. 2018 Mar 13;12:8. doi: 10.3389/fninf.2018.00008. eCollection 2018.


An open repository for single-cell reconstructions of the brain forest.

Akram MA, Nanda S, Maraver P, Armañanzas R, Ascoli GA.

Sci Data. 2018 Feb 27;5:180006. doi: 10.1038/sdata.2018.6.


Design and implementation of multi-signal and time-varying neural reconstructions.

Nanda S, Chen H, Das R, Bhattacharjee S, Cuntz H, Torben-Nielsen B, Peng H, Cox DN, De Schutter E, Ascoli GA.

Sci Data. 2018 Jan 23;5:170207. doi: 10.1038/sdata.2017.207.


A Commitment to Open Source in Neuroscience.

Gleeson P, Davison AP, Silver RA, Ascoli GA.

Neuron. 2017 Dec 6;96(5):964-965. doi: 10.1016/j.neuron.2017.10.013.


Morphological determinants of dendritic arborization neurons in Drosophila larva.

Nanda S, Das R, Bhattacharjee S, Cox DN, Ascoli GA.

Brain Struct Funct. 2018 Apr;223(3):1107-1120. doi: 10.1007/s00429-017-1541-9. Epub 2017 Nov 1.


Training for Data Science: Imagine There's no Countries.

Ascoli GA.

Neuroinformatics. 2017 Oct;15(4):301-302. doi: 10.1007/s12021-017-9345-x. No abstract available.


Dendritic Cytoskeletal Architecture Is Modulated by Combinatorial Transcriptional Regulation in Drosophila melanogaster.

Das R, Bhattacharjee S, Patel AA, Harris JM, Bhattacharya S, Letcher JM, Clark SG, Nanda S, Iyer EPR, Ascoli GA, Cox DN.

Genetics. 2017 Dec;207(4):1401-1421. doi: 10.1534/genetics.117.300393. Epub 2017 Oct 12.


Metrics for comparing neuronal tree shapes based on persistent homology.

Li Y, Wang D, Ascoli GA, Mitra P, Wang Y.

PLoS One. 2017 Aug 15;12(8):e0182184. doi: 10.1371/journal.pone.0182184. eCollection 2017.


Molecular fingerprinting of principal neurons in the rodent hippocampus: A neuroinformatics approach.

Hamilton DJ, White CM, Rees CL, Wheeler DW, Ascoli GA.

J Pharm Biomed Anal. 2017 Sep 10;144:269-278. doi: 10.1016/j.jpba.2017.03.062. Epub 2017 Apr 29.


Neurochemical Markers in the Mammalian Brain: Structure, Roles in Synaptic Communication, and Pharmacological Relevance.

Rees CL, White CM, Ascoli GA.

Curr Med Chem. 2017;24(28):3077-3103. doi: 10.2174/0929867324666170414163506. Review.


Automatic tracing of ultra-volumes of neuronal images.

Peng H, Zhou Z, Meijering E, Zhao T, Ascoli GA, Hawrylycz M.

Nat Methods. 2017 Mar 31;14(4):332-333. doi: 10.1038/nmeth.4233. No abstract available.


An ontology-based search engine for digital reconstructions of neuronal morphology.

Polavaram S, Ascoli GA.

Brain Inform. 2017 Jun;4(2):123-134. doi: 10.1007/s40708-017-0062-x. Epub 2017 Mar 23.


Win-win data sharing in neuroscience.

Ascoli GA, Maraver P, Nanda S, Polavaram S, Armañanzas R.

Nat Methods. 2017 Jan 31;14(2):112-116. doi: 10.1038/nmeth.4152.


Weighing the Evidence in Peters' Rule: Does Neuronal Morphology Predict Connectivity?

Rees CL, Moradi K, Ascoli GA.

Trends Neurosci. 2017 Feb;40(2):63-71. doi: 10.1016/j.tins.2016.11.007. Epub 2016 Dec 29. Review.


Graph Theoretic and Motif Analyses of the Hippocampal Neuron Type Potential Connectome.

Rees CL, Wheeler DW, Hamilton DJ, White CM, Komendantov AO, Ascoli GA.

eNeuro. 2016 Nov 18;3(6). pii: ENEURO.0205-16.2016. eCollection 2016 Nov-Dec.


Name-calling in the hippocampus (and beyond): coming to terms with neuron types and properties.

Hamilton DJ, Wheeler DW, White CM, Rees CL, Komendantov AO, Bergamino M, Ascoli GA.

Brain Inform. 2017 Mar;4(1):1-12. doi: 10.1007/s40708-016-0053-3. Epub 2016 Jun 9.


Corrigendum to "Differential Arc expression in the hippocampus and striatum during the transition from attentive to automatic navigation on a plus maze" [Neurobiol. Learn. Mem. 131 (2016) 36-45].

Gardner RS, Suarez DF, Robinson-Burton NK, Rudnicky CJ, Gulati A, Ascoli GA, Dumas TC.

Neurobiol Learn Mem. 2016 Jul;132:67. doi: 10.1016/j.nlm.2016.05.013. Epub 2016 Jun 4. No abstract available.


On the Data-Driven Road from Neurology to Neuronomy.

Ascoli GA.

Neuroinformatics. 2016 Jul;14(3):251-2. doi: 10.1007/s12021-016-9305-x. No abstract available.


Differential Arc expression in the hippocampus and striatum during the transition from attentive to automatic navigation on a plus maze.

Gardner RS, Suarez DF, Robinson-Burton NK, Rudnicky CJ, Gulati A, Ascoli GA, Dumas TC.

Neurobiol Learn Mem. 2016 May;131:36-45. doi: 10.1016/j.nlm.2016.03.008. Epub 2016 Mar 11. Erratum in: Neurobiol Learn Mem. 2016 Jul;132:67.


Distinct and synergistic feedforward inhibition of pyramidal cells by basket and bistratified interneurons.

Ferrante M, Ascoli GA.

Front Cell Neurosci. 2015 Nov 5;9:439. doi: 10.3389/fncel.2015.00439. eCollection 2015.


Sharing Neuron Data: Carrots, Sticks, and Digital Records.

Ascoli GA.

PLoS Biol. 2015 Oct 8;13(10):e1002275. doi: 10.1371/journal.pbio.1002275. eCollection 2015 Oct.

28. a knowledge base of neuron types in the rodent hippocampus.

Wheeler DW, White CM, Rees CL, Komendantov AO, Hamilton DJ, Ascoli GA.

Elife. 2015 Sep 24;4. pii: e09960. doi: 10.7554/eLife.09960.


On Synaptic Circuits, Memory, and Kumquats.

Ascoli GA.

N Engl J Med. 2015 Sep 17;373(12):1170-2. doi: 10.1056/NEJMcibr1509692. No abstract available.


BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images.

Peng H, Hawrylycz M, Roskams J, Hill S, Spruston N, Meijering E, Ascoli GA.

Neuron. 2015 Jul 15;87(2):252-6. doi: 10.1016/j.neuron.2015.06.036.


Topological characterization of neuronal arbor morphology via sequence representation: I--motif analysis.

Gillette TA, Ascoli GA.

BMC Bioinformatics. 2015 Jul 10;16:216. doi: 10.1186/s12859-015-0604-2.


Topological characterization of neuronal arbor morphology via sequence representation: II--global alignment.

Gillette TA, Hosseini P, Ascoli GA.

BMC Bioinformatics. 2015 Jul 4;16:209. doi: 10.1186/s12859-015-0605-1.


Older adults report moderately more detailed autobiographical memories.

Gardner RS, Mainetti M, Ascoli GA.

Front Psychol. 2015 May 19;6:631. doi: 10.3389/fpsyg.2015.00631. eCollection 2015.


From DIADEM to BigNeuron.

Peng H, Meijering E, Ascoli GA.

Neuroinformatics. 2015 Jul;13(3):259-60. doi: 10.1007/s12021-015-9270-9. No abstract available.


The natural frequency of human prospective memory increases with age.

Gardner RS, Ascoli GA.

Psychol Aging. 2015 Jun;30(2):209-19. doi: 10.1037/a0038876. Epub 2015 Mar 23.


A neural mechanism for background information-gated learning based on axonal-dendritic overlaps.

Mainetti M, Ascoli GA.

PLoS Comput Biol. 2015 Mar 13;11(3):e1004155. doi: 10.1371/journal.pcbi.1004155. eCollection 2015 Mar.


Towards the automatic classification of neurons.

Armañanzas R, Ascoli GA.

Trends Neurosci. 2015 May;38(5):307-18. doi: 10.1016/j.tins.2015.02.004. Epub 2015 Mar 9. Review.


The importance of metadata to assess information content in digital reconstructions of neuronal morphology.

Parekh R, Armañanzas R, Ascoli GA.

Cell Tissue Res. 2015 Apr;360(1):121-7. doi: 10.1007/s00441-014-2103-6. Epub 2015 Feb 5.


Doubling up on the fly: NeuroMorpho.Org Meets Big Data.

Nanda S, Allaham MM, Bergamino M, Polavaram S, Armañanzas R, Ascoli GA, Parekh R.

Neuroinformatics. 2015 Jan;13(1):127-9. doi: 10.1007/s12021-014-9257-y. No abstract available.


Statistical analysis and data mining of digital reconstructions of dendritic morphologies.

Polavaram S, Gillette TA, Parekh R, Ascoli GA.

Front Neuroanat. 2014 Dec 4;8:138. doi: 10.3389/fnana.2014.00138. eCollection 2014.


A community spring for neuroscience data sharing.

Ascoli GA.

Neuroinformatics. 2014 Oct;12(4):509-11. doi: 10.1007/s12021-014-9246-1. No abstract available.


Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis.

Peng H, Tang J, Xiao H, Bria A, Zhou J, Butler V, Zhou Z, Gonzalez-Bellido PT, Oh SW, Chen J, Mitra A, Tsien RW, Zeng H, Ascoli GA, Iannello G, Hawrylycz M, Myers E, Long F.

Nat Commun. 2014 Jul 11;5:4342. doi: 10.1038/ncomms5342.


Quantitative investigations of axonal and dendritic arbors: development, structure, function, and pathology.

Parekh R, Ascoli GA.

Neuroscientist. 2015 Jun;21(3):241-54. doi: 10.1177/1073858414540216. Epub 2014 Jun 27. Review.


Morphometric, geographic, and territorial characterization of brain arterial trees.

Mut F, Wright S, Ascoli GA, Cebral JR.

Int J Numer Method Biomed Eng. 2014 Jul;30(7):755-66. doi: 10.1002/cnm.2627. Epub 2014 Jan 27.


A secondary working memory challenge preserves primary place strategies despite overtraining.

Gardner RS, Uttaro MR, Fleming SE, Suarez DF, Ascoli GA, Dumas TC.

Learn Mem. 2013 Oct 17;20(11):648-56. doi: 10.1101/lm.031336.113.


Connecting connectomes.

Martone ME, Ascoli GA.

Neuroinformatics. 2013 Oct;11(4):389-92. doi: 10.1007/s12021-013-9207-0. No abstract available.


Automated image computing reshapes computational neuroscience.

Peng H, Roysam B, Ascoli GA.

BMC Bioinformatics. 2013 Oct 4;14:293. doi: 10.1186/1471-2105-14-293.


Augmenting weak semantic cognitive maps with an "abstractness" dimension.

Samsonovich AV, Ascoli GA.

Comput Intell Neurosci. 2013;2013:308176. doi: 10.1155/2013/308176. Epub 2013 Jun 12.


New insights on vertebrate olivo-cerebellar climbing fibers from computerized morphological reconstructions.

Sugihara I, Brown KM, Ascoli GA.

Bioarchitecture. 2013 Mar-Apr;3(2):38-41. doi: 10.4161/bioa.24062. Epub 2013 Mar 1.


Digital reconstruction and morphometric analysis of human brain arterial vasculature from magnetic resonance angiography.

Wright SN, Kochunov P, Mut F, Bergamino M, Brown KM, Mazziotta JC, Toga AW, Cebral JR, Ascoli GA.

Neuroimage. 2013 Nov 15;82:170-81. doi: 10.1016/j.neuroimage.2013.05.089. Epub 2013 May 28.

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