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Items: 1 to 50 of 73

1.

Plant Genome DataBase Japan (PGDBj).

Nakaya A, Ichihara H, Asamizu E, Shirasawa S, Nakamura Y, Tabata S, Hirakawa H.

Methods Mol Biol. 2017;1533:45-77.

PMID:
27987164
2.

Genome sequence and analysis of the Japanese morning glory Ipomoea nil.

Hoshino A, Jayakumar V, Nitasaka E, Toyoda A, Noguchi H, Itoh T, Shin-I T, Minakuchi Y, Koda Y, Nagano AJ, Yasugi M, Honjo MN, Kudoh H, Seki M, Kamiya A, Shiraki T, Carninci P, Asamizu E, Nishide H, Tanaka S, Park KI, Morita Y, Yokoyama K, Uchiyama I, Tanaka Y, Tabata S, Shinozaki K, Hayashizaki Y, Kohara Y, Suzuki Y, Sugano S, Fujiyama A, Iida S, Sakakibara Y.

Nat Commun. 2016 Nov 8;7:13295. doi: 10.1038/ncomms13295.

3.

Pleurochrysome: A Web Database of Pleurochrysis Transcripts and Orthologs Among Heterogeneous Algae.

Yamamoto N, Kudo T, Fujiwara S, Takatsuka Y, Hirokawa Y, Tsuzuki M, Takano T, Kobayashi M, Suda K, Asamizu E, Yokoyama K, Shibata D, Tabata S, Yano K.

Plant Cell Physiol. 2016 Jan;57(1):e6. doi: 10.1093/pcp/pcv195. Epub 2016 Jan 7.

4.

The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.

Miyata K, Kozaki T, Kouzai Y, Ozawa K, Ishii K, Asamizu E, Okabe Y, Umehara Y, Miyamoto A, Kobae Y, Akiyama K, Kaku H, Nishizawa Y, Shibuya N, Nakagawa T.

Plant Cell Physiol. 2014 Nov;55(11):1864-72. doi: 10.1093/pcp/pcu129. Epub 2014 Sep 17.

PMID:
25231970
5.

Identification of the carotenoid modifying gene PALE YELLOW PETAL 1 as an essential factor in xanthophyll esterification and yellow flower pigmentation in tomato (Solanum lycopersicum).

Ariizumi T, Kishimoto S, Kakami R, Maoka T, Hirakawa H, Suzuki Y, Ozeki Y, Shirasawa K, Bernillon S, Okabe Y, Moing A, Asamizu E, Rothan C, Ohmiya A, Ezura H.

Plant J. 2014 Aug;79(3):453-65. doi: 10.1111/tpj.12570. Epub 2014 Jul 2.

6.

A novel tomato mutant, Solanum lycopersicum elongated fruit1 (Slelf1), exhibits an elongated fruit shape caused by increased cell layers in the proximal region of the ovary.

Chusreeaeom K, Ariizumi T, Asamizu E, Okabe Y, Shirasawa K, Ezura H.

Mol Genet Genomics. 2014 Jun;289(3):399-409. doi: 10.1007/s00438-014-0822-8. Epub 2014 Feb 12.

PMID:
24519535
7.

Plant Genome DataBase Japan (PGDBj): a portal website for the integration of plant genome-related databases.

Asamizu E, Ichihara H, Nakaya A, Nakamura Y, Hirakawa H, Ishii T, Tamura T, Fukami-Kobayashi K, Nakajima Y, Tabata S.

Plant Cell Physiol. 2014 Jan;55(1):e8. doi: 10.1093/pcp/pct189. Epub 2013 Dec 19.

8.

Suppression of γ-aminobutyric acid (GABA) transaminases induces prominent GABA accumulation, dwarfism and infertility in the tomato (Solanum lycopersicum L.).

Koike S, Matsukura C, Takayama M, Asamizu E, Ezura H.

Plant Cell Physiol. 2013 May;54(5):793-807. doi: 10.1093/pcp/pct035. Epub 2013 Feb 23.

PMID:
23435575
9.

Mapping of Micro-Tom BAC-End Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms.

Asamizu E, Shirasawa K, Hirakawa H, Sato S, Tabata S, Yano K, Ariizumi T, Shibata D, Ezura H.

Int J Plant Genomics. 2012;2012:437026. doi: 10.1155/2012/437026. Epub 2012 Nov 27.

10.

Availability of Micro-Tom mutant library combined with TILLING in molecular breeding of tomato fruit shelf-life.

Okabe Y, Asamizu E, Ariizumi T, Shirasawa K, Tabata S, Ezura H.

Breed Sci. 2012 Jun;62(2):202-8. doi: 10.1270/jsbbs.62.202. Epub 2012 Jun 19.

11.

A novel class of sticky peel and light green mutations causes cuticle deficiency in leaves and fruits of tomato (Solanum lycopersicum).

Kimbara J, Yoshida M, Ito H, Hosoi K, Kusano M, Kobayashi M, Ariizumi T, Asamizu E, Ezura H.

Planta. 2012 Nov;236(5):1559-70. doi: 10.1007/s00425-012-1719-6. Epub 2012 Jul 27.

PMID:
22837053
12.

Development of gene-based markers and construction of an integrated linkage map in eggplant by using Solanum orthologous (SOL) gene sets.

Fukuoka H, Miyatake K, Nunome T, Negoro S, Shirasawa K, Isobe S, Asamizu E, Yamaguchi H, Ohyama A.

Theor Appl Genet. 2012 Jun;125(1):47-56. doi: 10.1007/s00122-012-1815-9. Epub 2012 Feb 16.

PMID:
22350090
13.

Characterisation of 13 glutamate receptor-like genes encoded in the tomato genome by structure, phylogeny and expression profiles.

Aouini A, Matsukura C, Ezura H, Asamizu E.

Gene. 2012 Feb 1;493(1):36-43. doi: 10.1016/j.gene.2011.11.037. Epub 2011 Dec 1.

PMID:
22143033
14.

Tomato TILLING technology: development of a reverse genetics tool for the efficient isolation of mutants from Micro-Tom mutant libraries.

Okabe Y, Asamizu E, Saito T, Matsukura C, Ariizumi T, Brès C, Rothan C, Mizoguchi T, Ezura H.

Plant Cell Physiol. 2011 Nov;52(11):1994-2005. doi: 10.1093/pcp/pcr134. Epub 2011 Sep 30.

15.

Genetic suppression analysis in novel vacuolar processing enzymes reveals their roles in controlling sugar accumulation in tomato fruits.

Ariizumi T, Higuchi K, Arakaki S, Sano T, Asamizu E, Ezura H.

J Exp Bot. 2011 May;62(8):2773-86. doi: 10.1093/jxb/erq451. Epub 2011 Jan 31.

PMID:
21282322
16.

TOMATOMA: a novel tomato mutant database distributing Micro-Tom mutant collections.

Saito T, Ariizumi T, Okabe Y, Asamizu E, Hiwasa-Tanase K, Fukuda N, Mizoguchi T, Yamazaki Y, Aoki K, Ezura H.

Plant Cell Physiol. 2011 Feb;52(2):283-96. doi: 10.1093/pcp/pcr004. Epub 2011 Jan 21.

17.

SNP discovery and linkage map construction in cultivated tomato.

Shirasawa K, Isobe S, Hirakawa H, Asamizu E, Fukuoka H, Just D, Rothan C, Sasamoto S, Fujishiro T, Kishida Y, Kohara M, Tsuruoka H, Wada T, Nakamura Y, Sato S, Tabata S.

DNA Res. 2010 Dec;17(6):381-91. doi: 10.1093/dnares/dsq024. Epub 2010 Nov 2.

18.

Enhanced polyamine accumulation alters carotenoid metabolism at the transcriptional level in tomato fruit over-expressing spermidine synthase.

Neily MH, Matsukura C, Maucourt M, Bernillon S, Deborde C, Moing A, Yin YG, Saito T, Mori K, Asamizu E, Rolin D, Moriguchi T, Ezura H.

J Plant Physiol. 2011 Feb 15;168(3):242-52. doi: 10.1016/j.jplph.2010.07.003. Epub 2010 Aug 13.

PMID:
20708298
19.

An interspecific linkage map of SSR and intronic polymorphism markers in tomato.

Shirasawa K, Asamizu E, Fukuoka H, Ohyama A, Sato S, Nakamura Y, Tabata S, Sasamoto S, Wada T, Kishida Y, Tsuruoka H, Fujishiro T, Yamada M, Isobe S.

Theor Appl Genet. 2010 Aug;121(4):731-9. doi: 10.1007/s00122-010-1344-3. Epub 2010 Apr 30.

20.

Comprehensive resources for tomato functional genomics based on the miniature model tomato micro-tom.

Matsukura C, Aoki K, Fukuda N, Mizoguchi T, Asamizu E, Saito T, Shibata D, Ezura H.

Curr Genomics. 2008 Nov;9(7):436-43. doi: 10.2174/138920208786241225.

21.

Apoplastic plant subtilases support arbuscular mycorrhiza development in Lotus japonicus.

Takeda N, Sato S, Asamizu E, Tabata S, Parniske M.

Plant J. 2009 Jun;58(5):766-77. doi: 10.1111/j.1365-313X.2009.03824.x. Epub 2009 Feb 10.

22.

CYCLOPS, a mediator of symbiotic intracellular accommodation.

Yano K, Yoshida S, Müller J, Singh S, Banba M, Vickers K, Markmann K, White C, Schuller B, Sato S, Asamizu E, Tabata S, Murooka Y, Perry J, Wang TL, Kawaguchi M, Imaizumi-Anraku H, Hayashi M, Parniske M.

Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20540-5. doi: 10.1073/pnas.0806858105. Epub 2008 Dec 11.

23.

A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus.

Asamizu E, Shimoda Y, Kouchi H, Tabata S, Sato S.

Plant Physiol. 2008 Aug;147(4):2030-40. doi: 10.1104/pp.108.118141. Epub 2008 Jun 20.

24.

Genome structure of the legume, Lotus japonicus.

Sato S, Nakamura Y, Kaneko T, Asamizu E, Kato T, Nakao M, Sasamoto S, Watanabe A, Ono A, Kawashima K, Fujishiro T, Katoh M, Kohara M, Kishida Y, Minami C, Nakayama S, Nakazaki N, Shimizu Y, Shinpo S, Takahashi C, Wada T, Yamada M, Ohmido N, Hayashi M, Fukui K, Baba T, Nakamichi T, Mori H, Tabata S.

DNA Res. 2008 Aug;15(4):227-39. doi: 10.1093/dnares/dsn008. Epub 2008 May 28.

25.

IDENTIFICATION OF GENES PREFERENTIALLY EXPRESSED DURING ASEXUAL SPORULATION IN PORPHYRA YEZOENSIS GAMETOPHYTES (BANGIALES, RHODOPHYTA)(1).

Kitade Y, Asamizu E, Fukuda S, Nakajima M, Ootsuka S, Endo H, Tabata S, Saga N.

J Phycol. 2008 Feb;44(1):113-23. doi: 10.1111/j.1529-8817.2007.00456.x.

PMID:
27041048
26.

Gene expression profiling of coccolith-bearing cells and naked cells in haptophyte Pleurochrysis haptonemofera with a cDNA macroarray system.

Fujiwara S, Hirokawa Y, Takatsuka Y, Suda K, Asamizu E, Takayanagi T, Shibata D, Tabata S, Tsuzuki M.

Mar Biotechnol (NY). 2007 Sep-Oct;9(5):550-60. Epub 2007 Jul 24.

PMID:
17659451
27.

Genome sequencing and genome resources in model legumes.

Sato S, Nakamura Y, Asamizu E, Isobe S, Tabata S.

Plant Physiol. 2007 Jun;144(2):588-93. Review. No abstract available.

28.

NUCLEOPORIN85 is required for calcium spiking, fungal and bacterial symbioses, and seed production in Lotus japonicus.

Saito K, Yoshikawa M, Yano K, Miwa H, Uchida H, Asamizu E, Sato S, Tabata S, Imaizumi-Anraku H, Umehara Y, Kouchi H, Murooka Y, Szczyglowski K, Downie JA, Parniske M, Hayashi M, Kawaguchi M.

Plant Cell. 2007 Feb;19(2):610-24. Epub 2007 Feb 16.

29.

A gain-of-function mutation in a cytokinin receptor triggers spontaneous root nodule organogenesis.

Tirichine L, Sandal N, Madsen LH, Radutoiu S, Albrektsen AS, Sato S, Asamizu E, Tabata S, Stougaard J.

Science. 2007 Jan 5;315(5808):104-7. Epub 2006 Nov 16.

30.

Comprehensive structural analysis of the genome of red clover (Trifolium pratense L.).

Sato S, Isobe S, Asamizu E, Ohmido N, Kataoka R, Nakamura Y, Kaneko T, Sakurai N, Okumura K, Klimenko I, Sasamoto S, Wada T, Watanabe A, Kohara M, Fujishiro T, Tabata S.

DNA Res. 2005;12(5):301-64. Epub 2006 Jan 11.

PMID:
16769692
31.

Identification of a Sed5-like SNARE gene LjSYP32-1 that contributes to nodule tissue formation of Lotus japonicus.

Mai HT, Nomura M, Takegawa K, Asamizu E, Sato S, Kato T, Tabata S, Tajima S.

Plant Cell Physiol. 2006 Jul;47(7):829-38. Epub 2006 May 13.

PMID:
16699179
32.
33.

Plastid proteins crucial for symbiotic fungal and bacterial entry into plant roots.

Imaizumi-Anraku H, Takeda N, Charpentier M, Perry J, Miwa H, Umehara Y, Kouchi H, Murakami Y, Mulder L, Vickers K, Pike J, Downie JA, Wang T, Sato S, Asamizu E, Tabata S, Yoshikawa M, Murooka Y, Wu GJ, Kawaguchi M, Kawasaki S, Parniske M, Hayashi M.

Nature. 2005 Feb 3;433(7025):527-31. Epub 2004 Dec 22.

34.

Large-scale analysis of gene expression profiles during early stages of root nodule formation in a model legume, Lotus japonicus.

Kouchi H, Shimomura K, Hata S, Hirota A, Wu GJ, Kumagai H, Tajima S, Suganuma N, Suzuki A, Aoki T, Hayashi M, Yokoyama T, Ohyama T, Asamizu E, Kuwata C, Shibata D, Tabata S.

DNA Res. 2004 Aug 31;11(4):263-74.

PMID:
15500251
35.

[System for expressed sequence tags (EST) analysis].

Asamizu E, Nakamura Y.

Tanpakushitsu Kakusan Koso. 2004 Aug;49(11 Suppl):1847-52. Review. Japanese. No abstract available.

PMID:
15377027
36.

Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis.

Asamizu E, Nakamura Y, Sato S, Tabata S.

Plant Mol Biol. 2004 Feb;54(3):405-14.

PMID:
15284495
37.

Expression profiling-based identification of CO2-responsive genes regulated by CCM1 controlling a carbon-concentrating mechanism in Chlamydomonas reinhardtii.

Miura K, Yamano T, Yoshioka S, Kohinata T, Inoue Y, Taniguchi F, Asamizu E, Nakamura Y, Tabata S, Yamato KT, Ohyama K, Fukuzawa H.

Plant Physiol. 2004 Jul;135(3):1595-607. Epub 2004 Jul 2.

38.

Distinctive features of plant organs characterized by global analysis of gene expression in Arabidopsis.

Obayashi T, Okegawa T, Sasaki-Sekimoto Y, Shimada H, Masuda T, Asamizu E, Nakamura Y, Shibata D, Tabata S, Takamiya K, Ohta H.

DNA Res. 2004 Feb 29;11(1):11-25.

PMID:
15141942
39.

Biosynthesis of the nitrile glucosides rhodiocyanoside A and D and the cyanogenic glucosides lotaustralin and linamarin in Lotus japonicus.

Forslund K, Morant M, Jørgensen B, Olsen CE, Asamizu E, Sato S, Tabata S, Bak S.

Plant Physiol. 2004 May;135(1):71-84.

40.
41.

Molecular analysis of the pathway for the synthesis of thiol tripeptides in the model legume Lotus japonicus.

Matamoros MA, Clemente MR, Sato S, Asamizu E, Tabata S, Ramos J, Moran JF, Stiller J, Gresshoff PM, Becana M.

Mol Plant Microbe Interact. 2003 Nov;16(11):1039-46.

42.
43.
44.

Archaeal-type rhodopsins in Chlamydomonas: model structure and intracellular localization.

Suzuki T, Yamasaki K, Fujita S, Oda K, Iseki M, Yoshida K, Watanabe M, Daiyasu H, Toh H, Asamizu E, Tabata S, Miura K, Fukuzawa H, Nakamura S, Takahashi T.

Biochem Biophys Res Commun. 2003 Feb 14;301(3):711-7.

PMID:
12565839
45.

Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii.

Kasahara M, Swartz TE, Olney MA, Onodera A, Mochizuki N, Fukuzawa H, Asamizu E, Tabata S, Kanegae H, Takano M, Christie JM, Nagatani A, Briggs WR.

Plant Physiol. 2002 Jun;129(2):762-73.

46.
47.
48.

Monitoring of methyl jasmonate-responsive genes in Arabidopsis by cDNA macroarray: self-activation of jasmonic acid biosynthesis and crosstalk with other phytohormone signaling pathways.

Sasaki Y, Asamizu E, Shibata D, Nakamura Y, Kaneko T, Awai K, Amagai M, Kuwata C, Tsugane T, Masuda T, Shimada H, Takamiya K, Ohta H, Tabata S.

DNA Res. 2001 Aug 31;8(4):153-61.

PMID:
11572481
49.

Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti (supplement).

Kaneko T, Nakamura Y, Sato S, Asamizu E, Kato T, Sasamoto S, Watanabe A, Idesawa K, Ishikawa A, Kawashima K, Kimura T, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Mochizuki Y, Nakayama S, Nakazaki N, Shimpo S, Sugimoto M, Takeuchi C, Yamada M, Tabata S.

DNA Res. 2000 Dec 31;7(6):381-406. No abstract available.

PMID:
11214974
50.

Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti.

Kaneko T, Nakamura Y, Sato S, Asamizu E, Kato T, Sasamoto S, Watanabe A, Idesawa K, Ishikawa A, Kawashima K, Kimura T, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Mochizuki Y, Nakayama S, Nakazaki N, Shimpo S, Sugimoto M, Takeuchi C, Yamada M, Tabata S.

DNA Res. 2000 Dec 31;7(6):331-8.

PMID:
11214968

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