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Items: 37

1.

Global Proteomic Analyses of STING-Positive and -Negative Macrophages Reveal STING and Non-STING Differentially Regulated Cellular and Molecular Pathways.

Aryal UK, Hedrick V, Onyedibe KI, Sobreira TJP, Sooreshjani MA, Wang M, Gürsoy UK, Sintim HO.

Proteomics Clin Appl. 2020 Feb 17:e1900109. doi: 10.1002/prca.201900109. [Epub ahead of print]

PMID:
32065729
2.

Stoichiometry of protein complexes in plant photosynthetic membranes.

McKenzie SD, Ibrahim IM, Aryal UK, Puthiyaveetil S.

Biochim Biophys Acta Bioenerg. 2020 Feb 1;1861(2):148141. doi: 10.1016/j.bbabio.2019.148141. Epub 2019 Dec 9.

PMID:
31825808
3.

Author Correction: Quantitative proteomic analysis of enhanced cellular effects of electrochemotherapy with Cisplatin in triple-negative breast cancer cells.

Mittal L, Aryal UK, Camarillo IG, Ferreira RM, Sundararajan R.

Sci Rep. 2019 Dec 10;9(1):19124. doi: 10.1038/s41598-019-55880-7.

4.

Proteome characterization of used nesting material and potential protein sources from group housed male mice, Mus musculus.

Barabas AJ, Aryal UK, Gaskill BN.

Sci Rep. 2019 Nov 26;9(1):17524. doi: 10.1038/s41598-019-53903-x.

5.

Gas-Phase Sequencing of Cyclotides: Introduction of Selective Ring Opening at Dehydroalanine via Ion/Ion Reaction.

Foreman DJ, Parsley NC, Lawler JT, Aryal UK, Hicks LM, McLuckey SA.

Anal Chem. 2019 Dec 17;91(24):15608-15616. doi: 10.1021/acs.analchem.9b03671. Epub 2019 Dec 3.

PMID:
31746593
6.

Proteomic Analysis of 3T3-L1 Adipocytes Treated with Insulin and TNF-α.

Chan H, Bhide KP, Vaidyam A, Hedrick V, Sobreira TJP, Sors TG, Grant RW, Aryal UK.

Proteomes. 2019 Oct 20;7(4). pii: E35. doi: 10.3390/proteomes7040035.

7.

Differential distributions of trafficking and signaling proteins of the maize ER-Golgi apparatus.

Okekeogbu IO, Aryal UK, Fernández-Niño SMG, Penning BW, Heazlewood JL, McCann MC, Carpita NC.

Plant Signal Behav. 2019;14(12):1672513. doi: 10.1080/15592324.2019.1672513. Epub 2019 Sep 28.

PMID:
31564200
8.

Quantitative proteomic analysis of enhanced cellular effects of electrochemotherapy with Cisplatin in triple-negative breast cancer cells.

Mittal L, Aryal UK, Camarillo IG, Ferreira RM, Sundararajan R.

Sci Rep. 2019 Sep 26;9(1):13916. doi: 10.1038/s41598-019-50048-9. Erratum in: Sci Rep. 2019 Dec 10;9(1):19124.

9.

Temporal analysis of vaginal proteome reveals developmental changes in lower reproductive tract of gilts across the first two weeks postnatal.

Harlow K, Suarez-Trujillo A, Hedrick V, Sobreira T, Aryal UK, Stewart K, Casey T.

Sci Rep. 2019 Sep 13;9(1):13241. doi: 10.1038/s41598-019-49597-w.

10.

Effective electrochemotherapy with curcumin in MDA-MB-231-human, triple negative breast cancer cells: A global proteomics study.

Mittal L, Aryal UK, Camarillo IG, Raman V, Sundararajan R.

Bioelectrochemistry. 2020 Feb;131:107350. doi: 10.1016/j.bioelechem.2019.107350. Epub 2019 Aug 22.

PMID:
31518962
11.

Ubiquitin C-Terminal Hydrolase L1: Biochemical and Cellular Characterization of a Covalent Cyanopyrrolidine-Based Inhibitor.

Krabill AD, Chen H, Hussain S, Feng C, Abdullah A, Das C, Aryal UK, Post CB, Wendt MK, Galardy PJ, Flaherty DP.

Chembiochem. 2020 Mar 2;21(5):712-722. doi: 10.1002/cbic.201900434. Epub 2019 Nov 7.

PMID:
31449350
12.

A Label-free Mass Spectrometry Method to Predict Endogenous Protein Complex Composition.

McBride Z, Chen D, Lee Y, Aryal UK, Xie J, Szymanski DB.

Mol Cell Proteomics. 2019 Aug;18(8):1588-1606. doi: 10.1074/mcp.RA119.001400. Epub 2019 Jun 11.

13.

Maternal high-fat diet exposure during gestation, lactation, or gestation and lactation differentially affects intestinal morphology and proteome of neonatal mice.

Suarez-Trujillo A, Chen Y, Aduwari C, Cummings S, Kuang S, Buhman KK, Hedrick V, Sobreira TJP, Aryal UK, Plaut K, Casey T.

Nutr Res. 2019 Jun;66:48-60. doi: 10.1016/j.nutres.2019.03.014. Epub 2019 Mar 27.

14.

Proteomic analysis of bacterial response to a 4-hydroxybenzylidene indolinone compound, which re-sensitizes bacteria to traditional antibiotics.

Opoku-Temeng C, Onyedibe KI, Aryal UK, Sintim HO.

J Proteomics. 2019 Jun 30;202:103368. doi: 10.1016/j.jprot.2019.04.018. Epub 2019 Apr 25.

PMID:
31028946
15.

Glycome and Proteome Components of Golgi Membranes Are Common between Two Angiosperms with Distinct Cell-Wall Structures.

Okekeogbu IO, Pattathil S, González Fernández-Niño SM, Aryal UK, Penning BW, Lao J, Heazlewood JL, Hahn MG, McCann MC, Carpita NC.

Plant Cell. 2019 May;31(5):1094-1112. doi: 10.1105/tpc.18.00755. Epub 2019 Mar 26.

PMID:
30914498
16.

Analysis of Protein Complexes in the Unicellular Cyanobacterium Cyanothece ATCC 51142.

Aryal UK, Ding Z, Hedrick V, Sobreira TJP, Kihara D, Sherman LA.

J Proteome Res. 2018 Nov 2;17(11):3628-3643. doi: 10.1021/acs.jproteome.8b00170. Epub 2018 Oct 3.

17.

Proteomic Analysis Reveals That an Extract of the Plant Lippia origanoides Suppresses Mitochondrial Metabolism in Triple-Negative Breast Cancer Cells.

Raman V, Aryal UK, Hedrick V, Ferreira RM, Fuentes Lorenzo JL, Stashenko EE, Levy M, Levy MM, Camarillo IG.

J Proteome Res. 2018 Oct 5;17(10):3370-3383. doi: 10.1021/acs.jproteome.8b00255. Epub 2018 Sep 18.

PMID:
30185032
18.

Diet Impacts Pre-implantation Histotroph Proteomes in Beef Cattle.

Harlow K, Taylor E, Casey T, Hedrick V, Sobreira T, Aryal UK, Lemenager RP, Funnell B, Stewart K.

J Proteome Res. 2018 Jun 1;17(6):2144-2155. doi: 10.1021/acs.jproteome.8b00077. Epub 2018 May 18.

PMID:
29722258
19.

Analysis of Human Nuclear Protein Complexes by Quantitative Mass Spectrometry Profiling.

Connelly KE, Hedrick V, Paschoal Sobreira TJ, Dykhuizen EC, Aryal UK.

Proteomics. 2018 Jun;18(11):e1700427. doi: 10.1002/pmic.201700427. Epub 2018 May 4.

20.

Efficient Approach for Improving the Performance of Nonhalogenated Green Solvent-Processed Polymer Solar Cells via Ternary-Blend Strategy.

Kranthiraja K, Aryal UK, Sree VG, Gunasekar K, Lee C, Kim M, Kim BJ, Song M, Jin SH.

ACS Appl Mater Interfaces. 2018 Apr 25;10(16):13748-13756. doi: 10.1021/acsami.7b19548. Epub 2018 Apr 10.

PMID:
29536724
21.

Triazine-based Polyelectrolyte as an Efficient Cathode Interfacial Material for Polymer Solar Cells.

Chakravarthi N, Aryal UK, Gunasekar K, Park HY, Gal YS, Cho YR, Yoo SI, Song M, Jin SH.

ACS Appl Mater Interfaces. 2017 Jul 26;9(29):24753-24762. doi: 10.1021/acsami.7b03187. Epub 2017 Jul 11.

PMID:
28658571
22.

Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.

Aryal UK, McBride Z, Chen D, Xie J, Szymanski DB.

J Proteomics. 2017 Aug 23;166:8-18. doi: 10.1016/j.jprot.2017.06.004. Epub 2017 Jun 13.

PMID:
28627464
23.

Enrichment and Analysis of Intact Phosphoproteins in Arabidopsis Seedlings.

Aryal UK, Ross AR, Krochko JE.

PLoS One. 2015 Jul 9;10(7):e0130763. doi: 10.1371/journal.pone.0130763. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0134535.

24.

A proteomic strategy for global analysis of plant protein complexes.

Aryal UK, Xiong Y, McBride Z, Kihara D, Xie J, Hall MC, Szymanski DB.

Plant Cell. 2014 Oct;26(10):3867-82. doi: 10.1105/tpc.114.127563. Epub 2014 Oct 7.

25.

Structural and functional characterization of DUF1471 domains of Salmonella proteins SrfN, YdgH/SssB, and YahO.

Eletsky A, Michalska K, Houliston S, Zhang Q, Daily MD, Xu X, Cui H, Yee A, Lemak A, Wu B, Garcia M, Burnet MC, Meyer KM, Aryal UK, Sanchez O, Ansong C, Xiao R, Acton TB, Adkins JN, Montelione GT, Joachimiak A, Arrowsmith CH, Savchenko A, Szyperski T, Cort JR.

PLoS One. 2014 Jul 10;9(7):e101787. doi: 10.1371/journal.pone.0101787. eCollection 2014.

26.

Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece.

Aryal UK, Callister SJ, McMahon BH, McCue LA, Brown J, Stöckel J, Liberton M, Mishra S, Zhang X, Nicora CD, Angel TE, Koppenaal DW, Smith RD, Pakrasi HB, Sherman LA.

J Proteome Res. 2014 Jul 3;13(7):3262-76. doi: 10.1021/pr5000889. Epub 2014 Jun 4.

PMID:
24846609
27.

Impact of alg3 gene deletion on growth, development, pigment production, protein secretion, and functions of recombinant Trichoderma reesei cellobiohydrolases in Aspergillus niger.

Dai Z, Aryal UK, Shukla A, Qian WJ, Smith RD, Magnuson JK, Adney WS, Beckham GT, Brunecky R, Himmel ME, Decker SR, Ju X, Zhang X, Baker SE.

Fungal Genet Biol. 2013 Dec;61:120-32. doi: 10.1016/j.fgb.2013.09.004. Epub 2013 Sep 25.

PMID:
24076077
28.

Resin-assisted enrichment of N-terminal peptides for characterizing proteolytic processing.

Kim JS, Dai Z, Aryal UK, Moore RJ, Camp DG 2nd, Baker SE, Smith RD, Qian WJ.

Anal Chem. 2013 Jul 16;85(14):6826-32. doi: 10.1021/ac401000q. Epub 2013 Jun 27.

29.

Proteome analyses of strains ATCC 51142 and PCC 7822 of the diazotrophic cyanobacterium Cyanothece sp. under culture conditions resulting in enhanced H₂ production.

Aryal UK, Callister SJ, Mishra S, Zhang X, Shutthanandan JI, Angel TE, Shukla AK, Monroe ME, Moore RJ, Koppenaal DW, Smith RD, Sherman L.

Appl Environ Microbiol. 2013 Feb;79(4):1070-7. doi: 10.1128/AEM.02864-12. Epub 2012 Nov 30.

30.

Mass spectrometry-based proteomics: existing capabilities and future directions.

Angel TE, Aryal UK, Hengel SM, Baker ES, Kelly RT, Robinson EW, Smith RD.

Chem Soc Rev. 2012 May 21;41(10):3912-28. doi: 10.1039/c2cs15331a. Epub 2012 Apr 13. Review.

31.

Identification of phosphorylated butyrylcholinesterase in human plasma using immunoaffinity purification and mass spectrometry.

Aryal UK, Lin CT, Kim JS, Heibeck TH, Wang J, Qian WJ, Lin Y.

Anal Chim Acta. 2012 Apr 20;723:68-75. doi: 10.1016/j.aca.2012.02.023. Epub 2012 Feb 19.

32.

Mapping N-linked glycosylation sites in the secretome and whole cells of Aspergillus niger using hydrazide chemistry and mass spectrometry.

Wang L, Aryal UK, Dai Z, Mason AC, Monroe ME, Tian ZX, Zhou JY, Su D, Weitz KK, Liu T, Camp DG 2nd, Smith RD, Baker SE, Qian WJ.

J Proteome Res. 2012 Jan 1;11(1):143-56. doi: 10.1021/pr200916k. Epub 2011 Dec 2.

33.

Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles.

Aryal UK, Stöckel J, Krovvidi RK, Gritsenko MA, Monroe ME, Moore RJ, Koppenaal DW, Smith RD, Pakrasi HB, Jacobs JM.

BMC Syst Biol. 2011 Dec 1;5:194. doi: 10.1186/1752-0509-5-194.

35.

Dynamic proteome analysis of Cyanothece sp. ATCC 51142 under constant light.

Aryal UK, Stöckel J, Welsh EA, Gritsenko MA, Nicora CD, Koppenaal DW, Smith RD, Pakrasi HB, Jacobs JM.

J Proteome Res. 2012 Feb 3;11(2):609-19. doi: 10.1021/pr200959x. Epub 2011 Dec 1.

PMID:
22060561
36.

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