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Items: 29

1.

Temporal analysis of vaginal proteome reveals developmental changes in lower reproductive tract of gilts across the first two weeks postnatal.

Harlow K, Suarez-Trujillo A, Hedrick V, Sobreira T, Aryal UK, Stewart K, Casey T.

Sci Rep. 2019 Sep 13;9(1):13241. doi: 10.1038/s41598-019-49597-w.

2.

Effective electrochemotherapy with curcumin in MDA-MB-231-human, triple negative breast cancer cells: A global proteomics study.

Mittal L, Aryal UK, Camarillo IG, Raman V, Sundararajan R.

Bioelectrochemistry. 2019 Aug 22;131:107350. doi: 10.1016/j.bioelechem.2019.107350. [Epub ahead of print]

PMID:
31518962
3.

Biochemical and cellular characterization of a cyanopyrrolidine covalent Ubiquitin C-terminal hydrolase L1 inhibitor.

Krabill AD, Chen H, Hussain S, Feng C, Abdullah A, Das C, Aryal UK, Post CB, Wendt MK, Galardy PJ, Flaherty DP.

Chembiochem. 2019 Aug 26. doi: 10.1002/cbic.201900434. [Epub ahead of print]

PMID:
31449350
4.

A Label-free Mass Spectrometry Method to Predict Endogenous Protein Complex Composition.

McBride Z, Chen D, Lee Y, Aryal UK, Xie J, Szymanski DB.

Mol Cell Proteomics. 2019 Aug;18(8):1588-1606. doi: 10.1074/mcp.RA119.001400. Epub 2019 Jun 11.

5.

Maternal high-fat diet exposure during gestation, lactation, or gestation and lactation differentially affects intestinal morphology and proteome of neonatal mice.

Suarez-Trujillo A, Chen Y, Aduwari C, Cummings S, Kuang S, Buhman KK, Hedrick V, Sobreira TJP, Aryal UK, Plaut K, Casey T.

Nutr Res. 2019 Jun;66:48-60. doi: 10.1016/j.nutres.2019.03.014. Epub 2019 Mar 27.

PMID:
31051321
6.

Proteomic analysis of bacterial response to a 4-hydroxybenzylidene indolinone compound, which re-sensitizes bacteria to traditional antibiotics.

Opoku-Temeng C, Onyedibe KI, Aryal UK, Sintim HO.

J Proteomics. 2019 Jun 30;202:103368. doi: 10.1016/j.jprot.2019.04.018. Epub 2019 Apr 25.

PMID:
31028946
7.

Glycome and Proteome Components of Golgi Membranes Are Common between Two Angiosperms with Distinct Cell-Wall Structures.

Okekeogbu IO, Pattathil S, González Fernández-Niño SM, Aryal UK, Penning BW, Lao J, Heazlewood JL, Hahn MG, McCann MC, Carpita NC.

Plant Cell. 2019 May;31(5):1094-1112. doi: 10.1105/tpc.18.00755. Epub 2019 Mar 26.

PMID:
30914498
8.

Analysis of Protein Complexes in the Unicellular Cyanobacterium Cyanothece ATCC 51142.

Aryal UK, Ding Z, Hedrick V, Sobreira TJP, Kihara D, Sherman LA.

J Proteome Res. 2018 Nov 2;17(11):3628-3643. doi: 10.1021/acs.jproteome.8b00170. Epub 2018 Oct 3.

PMID:
30216071
9.

Proteomic Analysis Reveals That an Extract of the Plant Lippia origanoides Suppresses Mitochondrial Metabolism in Triple-Negative Breast Cancer Cells.

Raman V, Aryal UK, Hedrick V, Ferreira RM, Fuentes Lorenzo JL, Stashenko EE, Levy M, Levy MM, Camarillo IG.

J Proteome Res. 2018 Oct 5;17(10):3370-3383. doi: 10.1021/acs.jproteome.8b00255. Epub 2018 Sep 18.

PMID:
30185032
10.

Diet Impacts Pre-implantation Histotroph Proteomes in Beef Cattle.

Harlow K, Taylor E, Casey T, Hedrick V, Sobreira T, Aryal UK, Lemenager RP, Funnell B, Stewart K.

J Proteome Res. 2018 Jun 1;17(6):2144-2155. doi: 10.1021/acs.jproteome.8b00077. Epub 2018 May 18.

PMID:
29722258
11.

Analysis of Human Nuclear Protein Complexes by Quantitative Mass Spectrometry Profiling.

Connelly KE, Hedrick V, Paschoal Sobreira TJ, Dykhuizen EC, Aryal UK.

Proteomics. 2018 Jun;18(11):e1700427. doi: 10.1002/pmic.201700427. Epub 2018 May 4.

12.

Efficient Approach for Improving the Performance of Nonhalogenated Green Solvent-Processed Polymer Solar Cells via Ternary-Blend Strategy.

Kranthiraja K, Aryal UK, Sree VG, Gunasekar K, Lee C, Kim M, Kim BJ, Song M, Jin SH.

ACS Appl Mater Interfaces. 2018 Apr 25;10(16):13748-13756. doi: 10.1021/acsami.7b19548. Epub 2018 Apr 10.

PMID:
29536724
13.

Triazine-based Polyelectrolyte as an Efficient Cathode Interfacial Material for Polymer Solar Cells.

Chakravarthi N, Aryal UK, Gunasekar K, Park HY, Gal YS, Cho YR, Yoo SI, Song M, Jin SH.

ACS Appl Mater Interfaces. 2017 Jul 26;9(29):24753-24762. doi: 10.1021/acsami.7b03187. Epub 2017 Jul 11.

PMID:
28658571
14.

Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.

Aryal UK, McBride Z, Chen D, Xie J, Szymanski DB.

J Proteomics. 2017 Aug 23;166:8-18. doi: 10.1016/j.jprot.2017.06.004. Epub 2017 Jun 13.

PMID:
28627464
15.

Enrichment and Analysis of Intact Phosphoproteins in Arabidopsis Seedlings.

Aryal UK, Ross AR, Krochko JE.

PLoS One. 2015 Jul 9;10(7):e0130763. doi: 10.1371/journal.pone.0130763. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0134535.

16.

A proteomic strategy for global analysis of plant protein complexes.

Aryal UK, Xiong Y, McBride Z, Kihara D, Xie J, Hall MC, Szymanski DB.

Plant Cell. 2014 Oct;26(10):3867-82. doi: 10.1105/tpc.114.127563. Epub 2014 Oct 7.

17.

Structural and functional characterization of DUF1471 domains of Salmonella proteins SrfN, YdgH/SssB, and YahO.

Eletsky A, Michalska K, Houliston S, Zhang Q, Daily MD, Xu X, Cui H, Yee A, Lemak A, Wu B, Garcia M, Burnet MC, Meyer KM, Aryal UK, Sanchez O, Ansong C, Xiao R, Acton TB, Adkins JN, Montelione GT, Joachimiak A, Arrowsmith CH, Savchenko A, Szyperski T, Cort JR.

PLoS One. 2014 Jul 10;9(7):e101787. doi: 10.1371/journal.pone.0101787. eCollection 2014.

18.

Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece.

Aryal UK, Callister SJ, McMahon BH, McCue LA, Brown J, Stöckel J, Liberton M, Mishra S, Zhang X, Nicora CD, Angel TE, Koppenaal DW, Smith RD, Pakrasi HB, Sherman LA.

J Proteome Res. 2014 Jul 3;13(7):3262-76. doi: 10.1021/pr5000889. Epub 2014 Jun 4.

PMID:
24846609
19.

Impact of alg3 gene deletion on growth, development, pigment production, protein secretion, and functions of recombinant Trichoderma reesei cellobiohydrolases in Aspergillus niger.

Dai Z, Aryal UK, Shukla A, Qian WJ, Smith RD, Magnuson JK, Adney WS, Beckham GT, Brunecky R, Himmel ME, Decker SR, Ju X, Zhang X, Baker SE.

Fungal Genet Biol. 2013 Dec;61:120-32. doi: 10.1016/j.fgb.2013.09.004. Epub 2013 Sep 25.

PMID:
24076077
20.

Resin-assisted enrichment of N-terminal peptides for characterizing proteolytic processing.

Kim JS, Dai Z, Aryal UK, Moore RJ, Camp DG 2nd, Baker SE, Smith RD, Qian WJ.

Anal Chem. 2013 Jul 16;85(14):6826-32. doi: 10.1021/ac401000q. Epub 2013 Jun 27.

21.

Proteome analyses of strains ATCC 51142 and PCC 7822 of the diazotrophic cyanobacterium Cyanothece sp. under culture conditions resulting in enhanced H₂ production.

Aryal UK, Callister SJ, Mishra S, Zhang X, Shutthanandan JI, Angel TE, Shukla AK, Monroe ME, Moore RJ, Koppenaal DW, Smith RD, Sherman L.

Appl Environ Microbiol. 2013 Feb;79(4):1070-7. doi: 10.1128/AEM.02864-12. Epub 2012 Nov 30.

22.

Mass spectrometry-based proteomics: existing capabilities and future directions.

Angel TE, Aryal UK, Hengel SM, Baker ES, Kelly RT, Robinson EW, Smith RD.

Chem Soc Rev. 2012 May 21;41(10):3912-28. doi: 10.1039/c2cs15331a. Epub 2012 Apr 13. Review.

23.

Identification of phosphorylated butyrylcholinesterase in human plasma using immunoaffinity purification and mass spectrometry.

Aryal UK, Lin CT, Kim JS, Heibeck TH, Wang J, Qian WJ, Lin Y.

Anal Chim Acta. 2012 Apr 20;723:68-75. doi: 10.1016/j.aca.2012.02.023. Epub 2012 Feb 19.

24.

Mapping N-linked glycosylation sites in the secretome and whole cells of Aspergillus niger using hydrazide chemistry and mass spectrometry.

Wang L, Aryal UK, Dai Z, Mason AC, Monroe ME, Tian ZX, Zhou JY, Su D, Weitz KK, Liu T, Camp DG 2nd, Smith RD, Baker SE, Qian WJ.

J Proteome Res. 2012 Jan 1;11(1):143-56. doi: 10.1021/pr200916k. Epub 2011 Dec 2.

PMID:
22136231
25.

Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles.

Aryal UK, Stöckel J, Krovvidi RK, Gritsenko MA, Monroe ME, Moore RJ, Koppenaal DW, Smith RD, Pakrasi HB, Jacobs JM.

BMC Syst Biol. 2011 Dec 1;5:194. doi: 10.1186/1752-0509-5-194.

27.

Dynamic proteome analysis of Cyanothece sp. ATCC 51142 under constant light.

Aryal UK, Stöckel J, Welsh EA, Gritsenko MA, Nicora CD, Koppenaal DW, Smith RD, Pakrasi HB, Jacobs JM.

J Proteome Res. 2012 Feb 3;11(2):609-19. doi: 10.1021/pr200959x. Epub 2011 Dec 1.

PMID:
22060561
28.

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