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Items: 32

1.

Shotgun proteomic analysis to study the decrease of xenograft tumor growth after rosemary extract treatment.

Valdés A, García-Cañas V, Pérez-Sánchez A, Barrajón-Catalán E, Ruiz-Torres V, Artemenko KA, Micol V, Bergquist J, Cifuentes A.

J Chromatogr A. 2017 May 26;1499:90-100. doi: 10.1016/j.chroma.2017.03.072. Epub 2017 Mar 27.

PMID:
28389096
2.

Differentiation of frogs from two populations belonging to the Pelophylax esculentus complex by LC-MS/MS comparison of their skin peptidomes.

Samgina TY, Artemenko KA, Bergquist J, Trebse P, Torkar G, Tolpina MD, Lebedev AT.

Anal Bioanal Chem. 2017 Mar;409(7):1951-1961. doi: 10.1007/s00216-016-0143-3. Epub 2016 Dec 23.

PMID:
28012108
3.

Hydrogen-free catalytic fractionation of woody biomass.

Galkin MV, Smit AT, Subbotina E, Artemenko KA, Bergquist J, Huijgen WJ, Samec JS.

ChemSusChem. 2016 Dec 8;9(23):3280-3287. doi: 10.1002/cssc.201600648. Epub 2016 Nov 15.

PMID:
27860308
4.

Nano-liquid Chromatography-orbitrap MS-based Quantitative Proteomics Reveals Differences Between the Mechanisms of Action of Carnosic Acid and Carnosol in Colon Cancer Cells.

Valdés A, García-Cañas V, Artemenko KA, Simó C, Bergquist J, Cifuentes A.

Mol Cell Proteomics. 2017 Jan;16(1):8-22. doi: 10.1074/mcp.M116.061481. Epub 2016 Nov 10.

5.

The chaperone co-inducer BGP-15 alleviates ventilation-induced diaphragm dysfunction.

Salah H, Li M, Cacciani N, Gastaldello S, Ogilvie H, Akkad H, Namuduri AV, Morbidoni V, Artemenko KA, Balogh G, Martinez-Redondo V, Jannig P, Hedström Y, Dworkin B, Bergquist J, Ruas J, Vigh L, Salviati L, Larsson L.

Sci Transl Med. 2016 Aug 3;8(350):350ra103. doi: 10.1126/scitranslmed.aaf7099.

PMID:
27488897
6.

Comprehensive Proteomic Study of the Antiproliferative Activity of a Polyphenol-Enriched Rosemary Extract on Colon Cancer Cells Using Nanoliquid Chromatography-Orbitrap MS/MS.

Valdés A, Artemenko KA, Bergquist J, García-Cañas V, Cifuentes A.

J Proteome Res. 2016 Jun 3;15(6):1971-85. doi: 10.1021/acs.jproteome.6b00154. Epub 2016 Apr 29.

PMID:
27103343
7.

LTQ Orbitrap Velos in routine de novo sequencing of non-tryptic skin peptides from the frog Rana latastei with traditional and reliable manual spectra interpretation.

Samgina TY, Tolpina MD, Trebse P, Torkar G, Artemenko KA, Bergquist J, Lebedev AT.

Rapid Commun Mass Spectrom. 2016 Jan 30;30(2):265-76.

PMID:
27071218
8.

Proteolytic degradation and deactivation of amphibian skin peptides obtained by electrical stimulation of their dorsal glands.

Samgina TY, Tolpina MI, Hakalehto E, Artemenko KA, Bergquist J, Lebedev AT.

Anal Bioanal Chem. 2016 May;408(14):3761-8. doi: 10.1007/s00216-016-9462-7. Epub 2016 Mar 15.

PMID:
26975184
9.

Mass spectrometric de novo sequencing of natural non-tryptic peptides: comparing peculiarities of collision-induced dissociation (CID) and high energy collision dissociation (HCD).

Samgina TY, Vorontsov EA, Gorshkov VA, Artemenko KA, Zubarev RA, Lebedev AT.

Rapid Commun Mass Spectrom. 2014 Dec 15;28(23):2595-604. doi: 10.1002/rcm.7049.

PMID:
25366406
10.

Post translational modifications in adenovirus type 2.

Bergström Lind S, Artemenko KA, Elfineh L, Zhao Y, Bergquist J, Pettersson U.

Virology. 2013 Dec;447(1-2):104-11. doi: 10.1016/j.virol.2013.08.033. Epub 2013 Sep 21.

11.

Proteome analysis of adenovirus using mass spectrometry.

Lind SB, Artemenko KA, Pettersson U.

Methods Mol Biol. 2014;1089:25-44. doi: 10.1007/978-1-62703-679-5_2.

PMID:
24132475
12.

Signaling in insulin-secreting MIN6 pseudoislets and monolayer cells.

Chowdhury A, Satagopam VP, Manukyan L, Artemenko KA, Fung YM, Schneider R, Bergquist J, Bergsten P.

J Proteome Res. 2013 Dec 6;12(12):5954-62. doi: 10.1021/pr400864w. Epub 2013 Sep 30.

PMID:
24006944
13.

Collision-induced dissociation fragmentation inside disulfide C-terminal loops of natural non-tryptic peptides.

Samgina TY, Vorontsov EA, Gorshkov VA, Artemenko KA, Zubarev RA, Ytterberg JA, Lebedev AT.

J Am Soc Mass Spectrom. 2013 Jul;24(7):1037-44. doi: 10.1007/s13361-013-0632-y. Epub 2013 Apr 30.

PMID:
23633018
14.

The phosphoproteome of the adenovirus type 2 virion.

Bergström Lind S, Artemenko KA, Elfineh L, Zhao Y, Bergquist J, Pettersson U.

Virology. 2012 Nov 10;433(1):253-61. doi: 10.1016/j.virol.2012.08.012. Epub 2012 Aug 28.

15.

L1CAM from human melanoma carries a novel type of N-glycan with Galβ1-4Galβ1- motif. Involvement of N-linked glycans in migratory and invasive behaviour of melanoma cells.

Hoja-Łukowicz D, Link-Lenczowski P, Carpentieri A, Amoresano A, Pocheć E, Artemenko KA, Bergquist J, Lityńska A.

Glycoconj J. 2013 Apr;30(3):205-25. doi: 10.1007/s10719-012-9374-5. Epub 2012 Apr 29.

16.

LC-MS/MS with 2D mass mapping of skin secretions' peptides as a reliable tool for interspecies identification inside Rana esculenta complex.

Samgina TY, Gorshkov VA, Artemenko KA, Vorontsov EA, Klykov OV, Ogourtsov SV, Zubarev RA, Lebedev AT.

Peptides. 2012 Apr;34(2):296-302. doi: 10.1016/j.peptides.2012.02.017. Epub 2012 Mar 3.

PMID:
22401909
17.

A strategy for identification of protein tyrosine phosphorylation.

Lind SB, Artemenko KA, Pettersson U.

Methods. 2012 Feb;56(2):275-83. doi: 10.1016/j.ymeth.2011.09.021. Epub 2011 Oct 2.

PMID:
21986561
18.

Novel cysteine tags for the sequencing of non-tryptic disulfide peptides of anurans: ESI-MS study of fragmentation efficiency.

Samgina TY, Vorontsov EA, Gorshkov VA, Artemenko KA, Nifant'ev IE, Kanawati B, Schmitt-Kopplin P, Zubarev RA, Lebedev AT.

J Am Soc Mass Spectrom. 2011 Dec;22(12):2246-55. doi: 10.1007/s13361-011-0247-0. Epub 2011 Oct 7.

PMID:
21979873
19.

Myeloid-derived suppressor cells express the death receptor Fas and apoptose in response to T cell-expressed FasL.

Sinha P, Chornoguz O, Clements VK, Artemenko KA, Zubarev RA, Ostrand-Rosenberg S.

Blood. 2011 May 19;117(20):5381-90. doi: 10.1182/blood-2010-11-321752. Epub 2011 Mar 30.

20.

Toward a comprehensive characterization of the phosphotyrosine proteome.

Bergström Lind S, Artemenko KA, Elfineh L, Mayrhofer C, Zubarev RA, Bergquist J, Pettersson U.

Cell Signal. 2011 Aug;23(8):1387-95. doi: 10.1016/j.cellsig.2011.03.021. Epub 2011 Apr 5.

PMID:
21447384
21.

Mass spectrometric study of bradykinin-related peptides (BRPs) from the skin secretion of Russian ranid frogs.

Samgina TY, Gorshkov VA, Vorontsov YA, Artemenko KA, Zubarev RA, Lebedev AT.

Rapid Commun Mass Spectrom. 2011 Apr 15;25(7):933-40. doi: 10.1002/rcm.4948. Epub 2011 Mar 14.

PMID:
21416530
22.

Optimization of immunoaffinity enrichment and detection: toward a comprehensive characterization of the phosphotyrosine proteome of K562 cells by liquid chromatography-mass spectrometry.

Artemenko KA, Bergström Lind S, Elfineh L, Mayrhofer C, Zubarev RA, Bergquist J, Pettersson U.

Analyst. 2011 May 7;136(9):1971-8. doi: 10.1039/c0an00649a. Epub 2011 Mar 14.

PMID:
21403953
23.

Proteomic pathway analysis reveals inflammation increases myeloid-derived suppressor cell resistance to apoptosis.

Chornoguz O, Grmai L, Sinha P, Artemenko KA, Zubarev RA, Ostrand-Rosenberg S.

Mol Cell Proteomics. 2011 Mar;10(3):M110.002980. doi: 10.1074/mcp.M110.002980. Epub 2010 Dec 29.

24.

Prodynorphin mutations cause the neurodegenerative disorder spinocerebellar ataxia type 23.

Bakalkin G, Watanabe H, Jezierska J, Depoorter C, Verschuuren-Bemelmans C, Bazov I, Artemenko KA, Yakovleva T, Dooijes D, Van de Warrenburg BP, Zubarev RA, Kremer B, Knapp PE, Hauser KF, Wijmenga C, Nyberg F, Sinke RJ, Verbeek DS.

Am J Hum Genet. 2010 Nov 12;87(5):593-603. doi: 10.1016/j.ajhg.2010.10.001. Epub 2010 Oct 28. Erratum in: Am J Hum Genet. 2010 Nov 12;87(5):736.

25.

Binding of sterols affects membrane functioning and sphingolipid composition in wheat roots.

Valitova YN, Kotlova ER, Novikov AV, Shavarda AL, Artemenko KA, Zubarev RA, Minibayeva FV.

Biochemistry (Mosc). 2010 May;75(5):554-61.

PMID:
20632933
26.

Novel natural peptides from Hyla arborea schelkownikowi skin secretion.

Samgina TY, Gorshkov VA, Artemenko KA, Kovalev SV, Ogourtsov SV, Zubarev RA, Lebedev AT.

Rapid Commun Mass Spectrom. 2010 Jun 30;24(12):1749-54. doi: 10.1002/rcm.4571.

PMID:
20499319
27.

N-terminal tagging strategy for de novo sequencing of short peptides by ESI-MS/MS and MALDI-MS/MS.

Samgina TY, Kovalev SV, Gorshkov VA, Artemenko KA, Poljakov NB, Lebedev AT.

J Am Soc Mass Spectrom. 2010 Jan;21(1):104-11. doi: 10.1016/j.jasms.2009.09.008. Epub 2009 Sep 20.

28.

Two dimensional mass mapping as a general method of data representation in comprehensive analysis of complex molecular mixtures.

Artemenko KA, Zubarev AR, Samgina TY, Lebedev AT, Savitski MM, Zubarev RA.

Anal Chem. 2009 May 15;81(10):3738-45. doi: 10.1021/ac802532j.

PMID:
19382811
29.

Mass spectrometric study of peptides secreted by the skin glands of the brown frog Rana arvalis from the Moscow region.

Samgina TY, Artemenko KA, Gorshkov VA, Ogourtsov SV, Zubarev RA, Lebedev AT.

Rapid Commun Mass Spectrom. 2009 May;23(9):1241-8. doi: 10.1002/rcm.3994.

PMID:
19308951
30.

De novo sequencing of peptides secreted by the skin glands of the Caucasian Green Frog Rana ridibunda.

Samgina TY, Artemenko KA, Gorshkov VA, Ogourtsov SV, Zubarev RA, Lebedev AT.

Rapid Commun Mass Spectrom. 2008 Nov;22(22):3517-25. doi: 10.1002/rcm.3759.

PMID:
18855342
31.

Oxidation versus carboxamidomethylation of S-S bond in ranid frog peptides: pro and contra for de novo MALDI-MS sequencing.

Samgina TY, Artemenko KA, Gorshkov VA, Poljakov NB, Lebedev AT.

J Am Soc Mass Spectrom. 2008 Apr;19(4):479-87. doi: 10.1016/j.jasms.2007.12.010. Epub 2008 Jan 11.

32.

Electrospray ionization tandem mass spectrometry sequencing of novel skin peptides from Ranid frogs containing disulfide bridges.

Samgina TY, Artemenko KA, Gorshkov VA, Lebedev AT, Nielsen ML, Savistski ML, Zubarev RA.

Eur J Mass Spectrom (Chichester). 2007;13(2):155-63.

PMID:
17881782

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