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Items: 1 to 50 of 201

1.

Refined structure of BeM9 reveals arginine hand, an overlooked structural motif in scorpion toxins affecting sodium channels.

Kuldyushev NA, Mineev KS, Berkut AA, Peigneur S, Arseniev AS, Tytgat J, Grishin EV, Vassilevski AA.

Proteins. 2018 Jul 14. doi: 10.1002/prot.25583. [Epub ahead of print]

PMID:
30007037
2.

Behavior of Most Widely Spread Lipids in Isotropic Bicelles.

Kot EF, Arseniev AS, Mineev KS.

Langmuir. 2018 Jul 17;34(28):8302-8313. doi: 10.1021/acs.langmuir.8b01454. Epub 2018 Jul 3.

PMID:
29924628
3.

Structural basis of the signal transduction via transmembrane domain of the human growth hormone receptor.

Bocharov EV, Lesovoy DM, Bocharova OV, Urban AS, Pavlov KV, Volynsky PE, Efremov RG, Arseniev AS.

Biochim Biophys Acta Gen Subj. 2018 Jun;1862(6):1410-1420. doi: 10.1016/j.bbagen.2018.03.022. Epub 2018 Mar 21.

PMID:
29571748
4.

Phase Transitions in Small Isotropic Bicelles.

Kot EF, Goncharuk SA, Arseniev AS, Mineev KS.

Langmuir. 2018 Mar 20;34(11):3426-3437. doi: 10.1021/acs.langmuir.7b03610. Epub 2018 Mar 6.

PMID:
29486112
5.

15N-Labelling and structure determination of adamantylated azolo-azines in solution.

Deev SL, Paramonov AS, Shestakova TS, Khalymbadzha IA, Chupakhin ON, Subbotina JO, Eltsov OS, Slepukhin PA, Rusinov VL, Arseniev AS, Shenkarev ZO.

Beilstein J Org Chem. 2017 Nov 29;13:2535-2548. doi: 10.3762/bjoc.13.250. eCollection 2017.

6.

Low-molecular-weight compounds with anticoagulant activity from the scorpion Heterometrus laoticus venom.

Thien TV, Anh HN, Trang NTT, Trung PV, Khoa NC, Osipov AV, Dubovskii PV, Ivanov IA, Arseniev AS, Tsetlin VI, Utkin YN.

Dokl Biochem Biophys. 2017 Sep;476(1):316-319. doi: 10.1134/S1607672917050052. Epub 2017 Nov 4.

PMID:
29101740
7.

NMR relaxation parameters of methyl groups as a tool to map the interfaces of helix-helix interactions in membrane proteins.

Lesovoy DM, Mineev KS, Bragin PE, Bocharova OV, Bocharov EV, Arseniev AS.

J Biomol NMR. 2017 Nov;69(3):165-179. doi: 10.1007/s10858-017-0146-1. Epub 2017 Oct 23.

PMID:
29063258
8.

Impact of membrane partitioning on the spatial structure of an S-type cobra cytotoxin.

Dubovskii PV, Dubinnyi MA, Volynsky PE, Pustovalova YE, Konshina AG, Utkin YN, Arseniev AS, Efremov RG.

J Biomol Struct Dyn. 2017 Nov 6:1-16. doi: 10.1080/07391102.2017.1389662. [Epub ahead of print]

PMID:
28990854
9.

Structural and Dynamic "Portraits" of Recombinant and Native Cytotoxin I from Naja oxiana: How Close Are They?

Dubovskii PV, Dubinnyi MA, Konshina AG, Kazakova ED, Sorokoumova GM, Ilyasova TM, Shulepko MA, Chertkova RV, Lyukmanova EN, Dolgikh DA, Arseniev AS, Efremov RG.

Biochemistry. 2017 Aug 29;56(34):4468-4477. doi: 10.1021/acs.biochem.7b00453. Epub 2017 Aug 14.

PMID:
28749688
10.

Mechanism and color modulation of fungal bioluminescence.

Kaskova ZM, Dörr FA, Petushkov VN, Purtov KV, Tsarkova AS, Rodionova NS, Mineev KS, Guglya EB, Kotlobay A, Baleeva NS, Baranov MS, Arseniev AS, Gitelson JI, Lukyanov S, Suzuki Y, Kanie S, Pinto E, Di Mascio P, Waldenmaier HE, Pereira TA, Carvalho RP, Oliveira AG, Oba Y, Bastos EL, Stevani CV, Yampolsky IV.

Sci Adv. 2017 Apr 26;3(4):e1602847. doi: 10.1126/sciadv.1602847. eCollection 2017 Apr.

11.

New Disulfide-Stabilized Fold Provides Sea Anemone Peptide to Exhibit Both Antimicrobial and TRPA1 Potentiating Properties.

Logashina YA, Solstad RG, Mineev KS, Korolkova YV, Mosharova IV, Dyachenko IA, Palikov VA, Palikova YA, Murashev AN, Arseniev AS, Kozlov SA, Stensvåg K, Haug T, Andreev YA.

Toxins (Basel). 2017 Apr 29;9(5). pii: E154. doi: 10.3390/toxins9050154.

12.

The Conformation of the Epidermal Growth Factor Receptor Transmembrane Domain Dimer Dynamically Adapts to the Local Membrane Environment.

Bocharov EV, Bragin PE, Pavlov KV, Bocharova OV, Mineev KS, Polyansky AA, Volynsky PE, Efremov RG, Arseniev AS.

Biochemistry. 2017 Mar 28;56(12):1697-1705. doi: 10.1021/acs.biochem.6b01085. Epub 2017 Mar 17.

PMID:
28291355
13.

Ligand Binding Properties of the Lentil Lipid Transfer Protein: Molecular Insight into the Possible Mechanism of Lipid Uptake.

Shenkarev ZO, Melnikova DN, Finkina EI, Sukhanov SV, Boldyrev IA, Gizatullina AK, Mineev KS, Arseniev AS, Ovchinnikova TV.

Biochemistry. 2017 Mar 28;56(12):1785-1796. doi: 10.1021/acs.biochem.6b01079. Epub 2017 Mar 16.

PMID:
28266846
14.

NMR investigation of the isolated second voltage-sensing domain of human Nav1.4 channel.

Paramonov AS, Lyukmanova EN, Myshkin MY, Shulepko MA, Kulbatskii DS, Petrosian NS, Chugunov AO, Dolgikh DA, Kirpichnikov MP, Arseniev AS, Shenkarev ZO.

Biochim Biophys Acta Biomembr. 2017 Mar;1859(3):493-506. doi: 10.1016/j.bbamem.2017.01.004. Epub 2017 Jan 6.

PMID:
28065835
15.

Modular toxin from the lynx spider Oxyopes takobius: Structure of spiderine domains in solution and membrane-mimicking environment.

Nadezhdin KD, Romanovskaia DD, Sachkova MY, Oparin PB, Kovalchuk SI, Grishin EV, Arseniev AS, Vassilevski AA.

Protein Sci. 2017 Mar;26(3):611-616. doi: 10.1002/pro.3101. Epub 2017 Feb 12.

16.

Helix-helix interactions in membrane domains of bitopic proteins: Specificity and role of lipid environment.

Bocharov EV, Mineev KS, Pavlov KV, Akimov SA, Kuznetsov AS, Efremov RG, Arseniev AS.

Biochim Biophys Acta Biomembr. 2017 Apr;1859(4):561-576. doi: 10.1016/j.bbamem.2016.10.024. Epub 2016 Nov 22. Review.

17.

Towards universal approach for bacterial production of three-finger Ly6/uPAR proteins: Case study of cytotoxin I from cobra N. oxiana.

Shulepko MA, Lyukmanova EN, Shenkarev ZO, Dubovskii PV, Astapova MV, Feofanov AV, Arseniev AS, Utkin YN, Kirpichnikov MP, Dolgikh DA.

Protein Expr Purif. 2017 Feb;130:13-20. doi: 10.1016/j.pep.2016.09.021. Epub 2016 Oct 1.

PMID:
27702601
18.

Secreted Isoform of Human Lynx1 (SLURP-2): Spatial Structure and Pharmacology of Interactions with Different Types of Acetylcholine Receptors.

Lyukmanova EN, Shulepko MA, Shenkarev ZO, Bychkov ML, Paramonov AS, Chugunov AO, Kulbatskii DS, Arvaniti M, Dolejsi E, Schaer T, Arseniev AS, Efremov RG, Thomsen MS, Dolezal V, Bertrand D, Dolgikh DA, Kirpichnikov MP.

Sci Rep. 2016 Aug 3;6:30698. doi: 10.1038/srep30698.

19.

Structure of purotoxin-2 from wolf spider: modular design and membrane-assisted mode of action in arachnid toxins.

Oparin PB, Nadezhdin KD, Berkut AA, Arseniev AS, Grishin EV, Vassilevski AA.

Biochem J. 2016 Oct 1;473(19):3113-26. doi: 10.1042/BCJ20160573. Epub 2016 Jul 13.

PMID:
27412961
20.

Central loop of non-conventional toxin WTX from Naja kaouthia is important for interaction with nicotinic acetylcholine receptors.

Lyukmanova EN, Shulepko MA, Shenkarev ZO, Kasheverov IE, Chugunov AO, Kulbatskii DS, Myshkin MY, Utkin YN, Efremov RG, Tsetlin VI, Arseniev AS, Kirpichnikov MP, Dolgikh DA.

Toxicon. 2016 Sep 1;119:274-9. doi: 10.1016/j.toxicon.2016.06.012. Epub 2016 Jun 23.

PMID:
27343701
21.

Characterization of Small Isotropic Bicelles with Various Compositions.

Mineev KS, Nadezhdin KD, Goncharuk SA, Arseniev AS.

Langmuir. 2016 Jul 5;32(26):6624-37. doi: 10.1021/acs.langmuir.6b00867. Epub 2016 Jun 22.

PMID:
27285636
22.

A novel lipid transfer protein from the pea Pisum sativum: isolation, recombinant expression, solution structure, antifungal activity, lipid binding, and allergenic properties.

Bogdanov IV, Shenkarev ZO, Finkina EI, Melnikova DN, Rumynskiy EI, Arseniev AS, Ovchinnikova TV.

BMC Plant Biol. 2016 Apr 30;16:107. doi: 10.1186/s12870-016-0792-6.

23.

Cell-free expression of the APP transmembrane fragments with Alzheimer's disease mutations using algal amino acid mixture for structural NMR studies.

Bocharova OV, Urban AS, Nadezhdin KD, Bocharov EV, Arseniev AS.

Protein Expr Purif. 2016 Jul;123:105-11. doi: 10.1016/j.pep.2016.04.004. Epub 2016 Apr 9.

PMID:
27071311
24.

Structural Basis of p75 Transmembrane Domain Dimerization.

Nadezhdin KD, García-Carpio I, Goncharuk SA, Mineev KS, Arseniev AS, Vilar M.

J Biol Chem. 2016 Jun 3;291(23):12346-57. doi: 10.1074/jbc.M116.723585. Epub 2016 Apr 7.

25.

Alternative packing of EGFR transmembrane domain suggests that protein-lipid interactions underlie signal conduction across membrane.

Bocharov EV, Lesovoy DM, Pavlov KV, Pustovalova YE, Bocharova OV, Arseniev AS.

Biochim Biophys Acta. 2016 Jun;1858(6):1254-61. doi: 10.1016/j.bbamem.2016.02.023. Epub 2016 Feb 18.

26.

A novel lipid transfer protein from the dill Anethum graveolens L.: isolation, structure, heterologous expression, and functional characteristics.

Melnikova DN, Mineev KS, Finkina EI, Arseniev AS, Ovchinnikova TV.

J Pept Sci. 2016 Jan;22(1):59-66. doi: 10.1002/psc.2840. Epub 2015 Dec 17.

PMID:
26680443
27.

HER2 Transmembrane Domain Dimerization Coupled with Self-Association of Membrane-Embedded Cytoplasmic Juxtamembrane Regions.

Bragin PE, Mineev KS, Bocharova OV, Volynsky PE, Bocharov EV, Arseniev AS.

J Mol Biol. 2016 Jan 16;428(1):52-61. doi: 10.1016/j.jmb.2015.11.007. Epub 2015 Nov 14.

PMID:
26585403
28.

The Membrane Mimetic Affects the Spatial Structure and Mobility of EGFR Transmembrane and Juxtamembrane Domains.

Mineev KS, Panova SV, Bocharova OV, Bocharov EV, Arseniev AS.

Biochemistry. 2015 Oct 20;54(41):6295-8. doi: 10.1021/acs.biochem.5b00851. Epub 2015 Oct 7.

PMID:
26440883
29.

NMR Dynamics of Transmembrane and Intracellular Domains of p75NTR in Lipid-Protein Nanodiscs.

Mineev KS, Goncharuk SA, Kuzmichev PK, Vilar M, Arseniev AS.

Biophys J. 2015 Aug 18;109(4):772-82. doi: 10.1016/j.bpj.2015.07.009.

30.

Structural Insight into Specificity of Interactions between Nonconventional Three-finger Weak Toxin from Naja kaouthia (WTX) and Muscarinic Acetylcholine Receptors.

Lyukmanova EN, Shenkarev ZO, Shulepko MA, Paramonov AS, Chugunov AO, Janickova H, Dolejsi E, Dolezal V, Utkin YN, Tsetlin VI, Arseniev AS, Efremov RG, Dolgikh DA, Kirpichnikov MP.

J Biol Chem. 2015 Sep 25;290(39):23616-30. doi: 10.1074/jbc.M115.656595. Epub 2015 Aug 4.

31.

The Chemical Basis of Fungal Bioluminescence.

Purtov KV, Petushkov VN, Baranov MS, Mineev KS, Rodionova NS, Kaskova ZM, Tsarkova AS, Petunin AI, Bondar VS, Rodicheva EK, Medvedeva SE, Oba Y, Oba Y, Arseniev AS, Lukyanov S, Gitelson JI, Yampolsky IV.

Angew Chem Int Ed Engl. 2015 Jul 6;54(28):8124-8. doi: 10.1002/anie.201501779. Epub 2015 Jun 11.

PMID:
26094784
32.

Human SLURP-1 and SLURP-2 Proteins Acting on Nicotinic Acetylcholine Receptors Reduce Proliferation of Human Colorectal Adenocarcinoma HT-29 Cells.

Lyukmanova EN, Shulepko MA, Bychkov ML, Shenkarev ZO, Paramonov AS, Chugunov AO, Arseniev AS, Dolgikh DA, Kirpichnikov MP.

Acta Naturae. 2014 Oct;6(4):60-6.

33.

Structure of membrane-active toxin from crab spider Heriaeus melloteei suggests parallel evolution of sodium channel gating modifiers in Araneomorphae and Mygalomorphae.

Berkut AA, Peigneur S, Myshkin MY, Paramonov AS, Lyukmanova EN, Arseniev AS, Grishin EV, Tytgat J, Shenkarev ZO, Vassilevski AA.

J Biol Chem. 2015 Jan 2;290(1):492-504. doi: 10.1074/jbc.M114.595678. Epub 2014 Oct 28.

34.

Toll-like receptor 3 transmembrane domain is able to perform various homotypic interactions: an NMR structural study.

Mineev KS, Goncharuk SA, Arseniev AS.

FEBS Lett. 2014 Nov 3;588(21):3802-7. doi: 10.1016/j.febslet.2014.08.031. Epub 2014 Sep 12.

35.

Lipid-protein nanodiscs offer new perspectives for structural and functional studies of water-soluble membrane-active peptides.

Shenkarev ZO, Lyukmanova EN, Paramonov AS, Panteleev PV, Balandin SV, Shulepko MA, Mineev KS, Ovchinnikova TV, Kirpichnikov MP, Arseniev AS.

Acta Naturae. 2014 Apr;6(2):84-94.

36.

Heterologous expression and solution structure of defensin from lentil Lens culinaris.

Shenkarev ZO, Gizatullina AK, Finkina EI, Alekseeva EA, Balandin SV, Mineev KS, Arseniev AS, Ovchinnikova TV.

Biochem Biophys Res Commun. 2014 Aug 22;451(2):252-7. doi: 10.1016/j.bbrc.2014.07.104. Epub 2014 Jul 30.

PMID:
25086358
37.

Structural and functional characterization of alternative transmembrane domain conformations in VEGF receptor 2 activation.

Manni S, Mineev KS, Usmanova D, Lyukmanova EN, Shulepko MA, Kirpichnikov MP, Winter J, Matkovic M, Deupi X, Arseniev AS, Ballmer-Hofer K.

Structure. 2014 Aug 5;22(8):1077-1089. doi: 10.1016/j.str.2014.05.010. Epub 2014 Jun 26.

38.

Point mutations in dimerization motifs of the transmembrane domain stabilize active or inactive state of the EphA2 receptor tyrosine kinase.

Sharonov GV, Bocharov EV, Kolosov PM, Astapova MV, Arseniev AS, Feofanov AV.

J Biol Chem. 2014 May 23;289(21):14955-64. doi: 10.1074/jbc.M114.558783. Epub 2014 Apr 14.

39.

Structural similarity between defense peptide from wheat and scorpion neurotoxin permits rational functional design.

Berkut AA, Usmanova DR, Peigneur S, Oparin PB, Mineev KS, Odintsova TI, Tytgat J, Arseniev AS, Grishin EV, Vassilevski AA.

J Biol Chem. 2014 May 16;289(20):14331-40. doi: 10.1074/jbc.M113.530477. Epub 2014 Mar 26.

40.

Bacterial and cell-free production of APP671-726 containing amyloid precursor protein transmembrane and metal-binding domains.

Bocharova OV, Urban AS, Nadezhdin KD, Bocharov EV, Arseniev AS.

Biochemistry (Mosc). 2013 Nov;78(11):1263-71. doi: 10.1134/S0006297913110060.

PMID:
24460940
41.

Structure of FGFR3 transmembrane domain dimer: implications for signaling and human pathologies.

Bocharov EV, Lesovoy DM, Goncharuk SA, Goncharuk MV, Hristova K, Arseniev AS.

Structure. 2013 Nov 5;21(11):2087-93. doi: 10.1016/j.str.2013.08.026. Epub 2013 Oct 10.

42.

NMR-based approach to measure the free energy of transmembrane helix-helix interactions.

Mineev KS, Lesovoy DM, Usmanova DR, Goncharuk SA, Shulepko MA, Lyukmanova EN, Kirpichnikov MP, Bocharov EV, Arseniev AS.

Biochim Biophys Acta. 2014 Jan;1838(1 Pt B):164-72. doi: 10.1016/j.bbamem.2013.08.021. Epub 2013 Sep 10.

43.

Recombinant production and solution structure of lipid transfer protein from lentil Lens culinaris.

Gizatullina AK, Finkina EI, Mineev KS, Melnikova DN, Bogdanov IV, Telezhinskaya IN, Balandin SV, Shenkarev ZO, Arseniev AS, Ovchinnikova TV.

Biochem Biophys Res Commun. 2013 Oct 4;439(4):427-32. doi: 10.1016/j.bbrc.2013.08.078. Epub 2013 Aug 31.

PMID:
23998937
44.

Structural investigation of influenza virus hemagglutinin membrane-anchoring peptide.

Mineev KS, Lyukmanova EN, Krabben L, Serebryakova MV, Shulepko MA, Arseniev AS, Kordyukova LV, Veit M.

Protein Eng Des Sel. 2013 Sep;26(9):547-52. doi: 10.1093/protein/gzt034. Epub 2013 Jul 19.

PMID:
23873663
45.

Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria.

Gushchin I, Chervakov P, Kuzmichev P, Popov AN, Round E, Borshchevskiy V, Ishchenko A, Petrovskaya L, Chupin V, Dolgikh DA, Arseniev AS, Kirpichnikov M, Gordeliy V.

Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12631-6. doi: 10.1073/pnas.1221629110. Epub 2013 Jul 19. Erratum in: Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14813. Arseniev, Alexander A [corrected to Arseniev, Alexander S].

46.

Sea anemone peptide with uncommon β-hairpin structure inhibits acid-sensing ion channel 3 (ASIC3) and reveals analgesic activity.

Osmakov DI, Kozlov SA, Andreev YA, Koshelev SG, Sanamyan NP, Sanamyan KE, Dyachenko IA, Bondarenko DA, Murashev AN, Mineev KS, Arseniev AS, Grishin EV.

J Biol Chem. 2013 Aug 9;288(32):23116-27. doi: 10.1074/jbc.M113.485516. Epub 2013 Jun 25.

47.

Long-range 1H-15N J couplings providing a method for direct studies of the structure and azide-tetrazole equilibrium in a series of azido-1,2,4-triazines and azidopyrimidines.

Shestakova TS, Shenkarev ZO, Deev SL, Chupakhin ON, Khalymbadzha IA, Rusinov VL, Arseniev AS.

J Org Chem. 2013 Jul 19;78(14):6975-82. doi: 10.1021/jo4008207. Epub 2013 Jun 27.

PMID:
23751069
48.

Peptaibol antiamoebin I: spatial structure, backbone dynamics, interaction with bicelles and lipid-protein nanodiscs, and pore formation in context of barrel-stave model.

Shenkarev ZO, Paramonov AS, Lyukmanova EN, Gizatullina AK, Zhuravleva AV, Tagaev AA, Yakimenko ZA, Telezhinskaya IN, Kirpichnikov MP, Ovchinnikova TV, Arseniev AS.

Chem Biodivers. 2013 May;10(5):838-63. doi: 10.1002/cbdv.201200421.

PMID:
23681729
49.

Human neuromodulator SLURP-1: bacterial expression, binding to muscle-type nicotinic acetylcholine receptor, secondary structure, and conformational heterogeneity in solution.

Shulepko MA, Lyukmanova EN, Paramonov AS, Lobas AA, Shenkarev ZO, Kasheverov IE, Dolgikh DA, Tsetlin VI, Arseniev AS, Kirpichnikov MP.

Biochemistry (Mosc). 2013 Feb;78(2):204-11. doi: 10.1134/S0006297913020090.

PMID:
23581991
50.

N-terminal fusion tags for effective production of g-protein-coupled receptors in bacterial cell-free systems.

Lyukmanova EN, Shenkarev ZO, Khabibullina NF, Kulbatskiy DS, Shulepko MA, Petrovskaya LE, Arseniev AS, Dolgikh DA, Kirpichnikov MP.

Acta Naturae. 2012 Oct;4(4):58-64.

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