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Items: 5

1.

Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium.

Arredondo-Alonso S, Top J, McNally A, Puranen S, Pesonen M, Pensar J, Marttinen P, Braat JC, Rogers MRC, van Schaik W, Kaski S, Willems RJL, Corander J, Schürch AC.

mBio. 2020 Feb 11;11(1). pii: e03284-19. doi: 10.1128/mBio.03284-19.

2.

Corrigendum: mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species.

Arredondo-Alonso S, Rogers MRC, Braat JC, Verschuuren TD, Top J, Corander J, Willems RJL, Schürch AC.

Microb Genom. 2019 Jan;5(1). doi: 10.1099/mgen.0.000249. No abstract available.

3.

mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species.

Arredondo-Alonso S, Rogers MRC, Braat JC, Verschuuren TD, Top J, Corander J, Willems RJL, Schürch AC.

Microb Genom. 2018 Nov;4(11). doi: 10.1099/mgen.0.000224. Epub 2018 Nov 1. Erratum in: Microb Genom. 2019 Jan;5(1):.

4.

Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene-based approaches.

Schürch AC, Arredondo-Alonso S, Willems RJL, Goering RV.

Clin Microbiol Infect. 2018 Apr;24(4):350-354. doi: 10.1016/j.cmi.2017.12.016. Epub 2018 Jan 5. Review.

5.

On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data.

Arredondo-Alonso S, Willems RJ, van Schaik W, Schürch AC.

Microb Genom. 2017 Aug 18;3(10):e000128. doi: 10.1099/mgen.0.000128. eCollection 2017 Oct.

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