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Items: 26

1.

baerhunter: An R package for the discovery and analysis of expressed non-coding regions in bacterial RNA-seq data.

Ozuna A, Liberto D, Joyce RM, Arnvig KB, Nobeli I.

Bioinformatics. 2019 Aug 16. pii: btz643. doi: 10.1093/bioinformatics/btz643. [Epub ahead of print]

PMID:
31418770
2.

Riboswitches: choosing the best platform.

Arnvig KB.

Biochem Soc Trans. 2019 Aug 30;47(4):1091-1099. doi: 10.1042/BST20180507. Epub 2019 Jun 27. Review.

PMID:
31249101
3.

Dual RNA-Seq of Human Leprosy Lesions Identifies Bacterial Determinants Linked to Host Immune Response.

Montoya DJ, Andrade P, Silva BJA, Teles RMB, Ma F, Bryson B, Sadanand S, Noel T, Lu J, Sarno E, Arnvig KB, Young D, Lahiri R, Williams DL, Fortune S, Bloom BR, Pellegrini M, Modlin RL.

Cell Rep. 2019 Mar 26;26(13):3574-3585.e3. doi: 10.1016/j.celrep.2019.02.109.

4.

Regulatory RNA in Mycobacterium tuberculosis, back to basics.

Schwenk S, Arnvig KB.

Pathog Dis. 2018 Jun 1;76(4). doi: 10.1093/femspd/fty035. Review.

PMID:
29796669
5.

Cell-wall synthesis and ribosome maturation are co-regulated by an RNA switch in Mycobacterium tuberculosis.

Schwenk S, Moores A, Nobeli I, McHugh TD, Arnvig KB.

Nucleic Acids Res. 2018 Jun 20;46(11):5837-5849. doi: 10.1093/nar/gky226.

6.

NLRP3 inflammasome activation by mycobacterial ESAT-6 and dsRNA in intraocular tuberculosis.

Basu S, Fowler BJ, Kerur N, Arnvig KB, Rao NA.

Microb Pathog. 2018 Jan;114:219-224. doi: 10.1016/j.micpath.2017.11.044. Epub 2017 Nov 24.

PMID:
29180292
7.

Cmr is a redox-responsive regulator of DosR that contributes to M. tuberculosis virulence.

Smith LJ, Bochkareva A, Rolfe MD, Hunt DM, Kahramanoglou C, Braun Y, Rodgers A, Blockley A, Coade S, Lougheed KEA, Hafneh NA, Glenn SM, Crack JC, Le Brun NE, Saldanha JW, Makarov V, Nobeli I, Arnvig K, Mukamolova GV, Buxton RS, Green J.

Nucleic Acids Res. 2017 Jun 20;45(11):6600-6612. doi: 10.1093/nar/gkx406.

8.

Expression, maturation and turnover of DrrS, an unusually stable, DosR regulated small RNA in Mycobacterium tuberculosis.

Moores A, Riesco AB, Schwenk S, Arnvig KB.

PLoS One. 2017 Mar 21;12(3):e0174079. doi: 10.1371/journal.pone.0174079. eCollection 2017.

9.

A new spanner in the works of bacterial transcription.

Arnvig KB, Werner F.

Elife. 2014 Apr 22;3:e02840. doi: 10.7554/eLife.02840.

10.

Noncoding RNA in Mycobacteria.

Arnvig KB, Cortes T, Young DB.

Microbiol Spectr. 2014 Apr;2(2). doi: 10.1128/microbiolspec.MGM2-0029-2013. Review.

PMID:
26105815
11.

A small RNA encoded in the Rv2660c locus of Mycobacterium tuberculosis is induced during starvation and infection.

Houghton J, Cortes T, Schubert O, Rose G, Rodgers A, De Ste Croix M, Aebersold R, Young DB, Arnvig KB.

PLoS One. 2013 Dec 12;8(12):e80047. doi: 10.1371/journal.pone.0080047. eCollection 2013.

12.

Genome-wide mapping of transcriptional start sites defines an extensive leaderless transcriptome in Mycobacterium tuberculosis.

Cortes T, Schubert OT, Rose G, Arnvig KB, Comas I, Aebersold R, Young DB.

Cell Rep. 2013 Nov 27;5(4):1121-31. doi: 10.1016/j.celrep.2013.10.031. Epub 2013 Nov 21. Erratum in: Cell Rep. 2014 Jan 30;6(2):415.

13.

Definition and annotation of (myco)bacterial non-coding RNA.

Lamichhane G, Arnvig KB, McDonough KA.

Tuberculosis (Edinb). 2013 Jan;93(1):26-9. doi: 10.1016/j.tube.2012.11.010. Epub 2013 Jan 4.

PMID:
23291152
14.

Non-coding RNA and its potential role in Mycobacterium tuberculosis pathogenesis.

Arnvig K, Young D.

RNA Biol. 2012 Apr;9(4):427-36. doi: 10.4161/rna.20105. Epub 2012 Apr 1. Review.

15.

Global analysis of the regulon of the transcriptional repressor LexA, a key component of SOS response in Mycobacterium tuberculosis.

Smollett KL, Smith KM, Kahramanoglou C, Arnvig KB, Buxton RS, Davis EO.

J Biol Chem. 2012 Jun 22;287(26):22004-14. doi: 10.1074/jbc.M112.357715. Epub 2012 Apr 23.

16.

Long-range transcriptional control of an operon necessary for virulence-critical ESX-1 secretion in Mycobacterium tuberculosis.

Hunt DM, Sweeney NP, Mori L, Whalan RH, Comas I, Norman L, Cortes T, Arnvig KB, Davis EO, Stapleton MR, Green J, Buxton RS.

J Bacteriol. 2012 May;194(9):2307-20. doi: 10.1128/JB.00142-12. Epub 2012 Mar 2.

17.

Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis.

Arnvig KB, Comas I, Thomson NR, Houghton J, Boshoff HI, Croucher NJ, Rose G, Perkins TT, Parkhill J, Dougan G, Young DB.

PLoS Pathog. 2011 Nov;7(11):e1002342. doi: 10.1371/journal.ppat.1002342. Epub 2011 Nov 3.

18.

Mycobacterium tuberculosis cAMP receptor protein (Rv3676) differs from the Escherichia coli paradigm in its cAMP binding and DNA binding properties and transcription activation properties.

Stapleton M, Haq I, Hunt DM, Arnvig KB, Artymiuk PJ, Buxton RS, Green J.

J Biol Chem. 2010 Mar 5;285(10):7016-27. doi: 10.1074/jbc.M109.047720. Epub 2009 Dec 22.

19.

Identification of small RNAs in Mycobacterium tuberculosis.

Arnvig KB, Young DB.

Mol Microbiol. 2009 Aug;73(3):397-408. doi: 10.1111/j.1365-2958.2009.06777.x. Epub 2009 Jun 22.

20.

Evolutionary comparison of ribosomal operon antitermination function.

Arnvig KB, Zeng S, Quan S, Papageorge A, Zhang N, Villapakkam AC, Squires CL.

J Bacteriol. 2008 Nov;190(21):7251-7. doi: 10.1128/JB.00760-08. Epub 2008 Aug 29.

21.

Structure of a Mycobacterium tuberculosis NusA-RNA complex.

Beuth B, Pennell S, Arnvig KB, Martin SR, Taylor IA.

EMBO J. 2005 Oct 19;24(20):3576-87. Epub 2005 Sep 29.

22.

The mechanism of upstream activation in the rrnB operon of Mycobacterium smegmatis is different from the Escherichia coli paradigm.

Arnvig KB, Gopal B, Papavinasasundaram KG, Cox RA, Colston MJ.

Microbiology. 2005 Feb;151(Pt 2):467-73.

PMID:
15699196
23.

A high-affinity interaction between NusA and the rrn nut site in Mycobacterium tuberculosis.

Arnvig KB, Pennell S, Gopal B, Colston MJ.

Proc Natl Acad Sci U S A. 2004 Jun 1;101(22):8325-30. Epub 2004 May 24.

24.

Structural and functional homology between the RNAP(I) subunits A14/A43 and the archaeal RNAP subunits E/F.

Meka H, Daoust G, Arnvig KB, Werner F, Brick P, Onesti S.

Nucleic Acids Res. 2003 Aug 1;31(15):4391-400.

25.

Purification and properties of phosphoribosyl-diphosphate synthetase from Bacillus subtilis.

Arnvig K, Hove-Jensen B, Switzer RL.

Eur J Biochem. 1990 Aug 28;192(1):195-200.

26.

Primary structure of the tms and prs genes of Bacillus subtilis.

Nilsson D, Hove-Jensen B, Arnvig K.

Mol Gen Genet. 1989 Sep;218(3):565-71.

PMID:
2555671

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