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Items: 48

1.

Spruce sugars and poultry hydrolysate as growth medium in repeated fed-batch fermentation processes for production of yeast biomass.

Lapeña D, Olsen PM, Arntzen MØ, Kosa G, Passoth V, Eijsink VGH, Horn SJ.

Bioprocess Biosyst Eng. 2019 Dec 27. doi: 10.1007/s00449-019-02271-x. [Epub ahead of print]

PMID:
31883034
2.

Metaproteomics: Sample Preparation and Methodological Considerations.

Kunath BJ, Minniti G, Skaugen M, Hagen LH, Vaaje-Kolstad G, Eijsink VGH, Pope PB, Arntzen MØ.

Adv Exp Med Biol. 2019;1073:187-215. doi: 10.1007/978-3-030-12298-0_8. Review.

PMID:
31236844
3.

Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production.

Tiukova IA, Brandenburg J, Blomqvist J, Sampels S, Mikkelsen N, Skaugen M, Arntzen MØ, Nielsen J, Sandgren M, Kerkhoven EJ.

Biotechnol Biofuels. 2019 Jun 4;12:137. doi: 10.1186/s13068-019-1478-8. eCollection 2019.

4.

The human gut Firmicute Roseburia intestinalis is a primary degrader of dietary β-mannans.

La Rosa SL, Leth ML, Michalak L, Hansen ME, Pudlo NA, Glowacki R, Pereira G, Workman CT, Arntzen MØ, Pope PB, Martens EC, Hachem MA, Westereng B.

Nat Commun. 2019 Feb 22;10(1):905. doi: 10.1038/s41467-019-08812-y.

5.

Production, Characterization, and Application of an Alginate Lyase, AMOR_PL7A, from Hot Vents in the Arctic Mid-Ocean Ridge.

Vuoristo KS, Fredriksen L, Oftebro M, Arntzen MØ, Aarstad OA, Stokke R, Steen IH, Hansen LD, Schüller RB, Aachmann FL, Horn SJ, Eijsink VGH.

J Agric Food Chem. 2019 Mar 13;67(10):2936-2945. doi: 10.1021/acs.jafc.8b07190. Epub 2019 Feb 25.

PMID:
30781951
6.

Denitrification as an N2O sink.

Conthe M, Lycus P, Arntzen MØ, Ramos da Silva A, Frostegård Å, Bakken LR, Kleerebezem R, van Loosdrecht MCM.

Water Res. 2019 Mar 15;151:381-387. doi: 10.1016/j.watres.2018.11.087. Epub 2018 Dec 24.

7.

Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling Bacteroidetes.

Taillefer M, Arntzen MØ, Henrissat B, Pope PB, Larsbrink J.

mSystems. 2018 Nov 20;3(6). pii: e00240-18. doi: 10.1128/mSystems.00240-18. eCollection 2018 Nov-Dec.

8.

From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus.

Kunath BJ, Delogu F, Naas AE, Arntzen MØ, Eijsink VGH, Henrissat B, Hvidsten TR, Pope PB.

ISME J. 2019 Mar;13(3):603-617. doi: 10.1038/s41396-018-0290-y. Epub 2018 Oct 12.

9.

Proteomic Detection of Carbohydrate-Active Enzymes (CAZymes) in Microbial Secretomes.

Tuveng TR, Eijsink VGH, Arntzen MØ.

Methods Mol Biol. 2019;1871:159-177. doi: 10.1007/978-1-4939-8814-3_12.

PMID:
30276740
10.

Multipoint Precision Binding of Substrate Protects Lytic Polysaccharide Monooxygenases from Self-Destructive Off-Pathway Processes.

Loose JSM, Arntzen MØ, Bissaro B, Ludwig R, Eijsink VGH, Vaaje-Kolstad G.

Biochemistry. 2018 Jul 17;57(28):4114-4124. doi: 10.1021/acs.biochem.8b00484. Epub 2018 Jun 29.

PMID:
29901989
11.

"Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system.

Naas AE, Solden LM, Norbeck AD, Brewer H, Hagen LH, Heggenes IM, McHardy AC, Mackie RI, Paša-Tolić L, Arntzen MØ, Eijsink VGH, Koropatkin NM, Hess M, Wrighton KC, Pope PB.

Microbiome. 2018 Mar 1;6(1):44. doi: 10.1186/s40168-018-0421-8.

12.

Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-degrading capacity.

Arntzen MØ, Várnai A, Mackie RI, Eijsink VGH, Pope PB.

Environ Microbiol. 2017 Jul;19(7):2701-2714. doi: 10.1111/1462-2920.13770. Epub 2017 May 29.

PMID:
28447389
13.

Analyzing Activities of Lytic Polysaccharide Monooxygenases by Liquid Chromatography and Mass Spectrometry.

Westereng B, Arntzen MØ, Agger JW, Vaaje-Kolstad G, Eijsink VGH.

Methods Mol Biol. 2017;1588:71-92. doi: 10.1007/978-1-4939-6899-2_7.

PMID:
28417362
14.

Genomic, proteomic and biochemical analysis of the chitinolytic machinery of Serratia marcescens BJL200.

Tuveng TR, Hagen LH, Mekasha S, Frank J, Arntzen MØ, Vaaje-Kolstad G, Eijsink VGH.

Biochim Biophys Acta Proteins Proteom. 2017 Apr;1865(4):414-421. doi: 10.1016/j.bbapap.2017.01.007. Epub 2017 Jan 24.

PMID:
28130068
15.

Novel Syntrophic Populations Dominate an Ammonia-Tolerant Methanogenic Microbiome.

Frank JA, Arntzen MØ, Sun L, Hagen LH, McHardy AC, Horn SJ, Eijsink VG, Schnürer A, Pope PB.

mSystems. 2016 Sep 13;1(5). pii: e00092-16. eCollection 2016 Sep-Oct.

16.

Quantitative Metaproteomics Highlight the Metabolic Contributions of Uncultured Phylotypes in a Thermophilic Anaerobic Digester.

Hagen LH, Frank JA, Zamanzadeh M, Eijsink VGH, Pope PB, Horn SJ, Arntzen MØ.

Appl Environ Microbiol. 2016 Dec 30;83(2). pii: e01955-16. doi: 10.1128/AEM.01955-16. Print 2017 Jan 15.

17.

Lytic polysaccharide monooxygenases and other oxidative enzymes are abundantly secreted by Aspergillus nidulans grown on different starches.

Nekiunaite L, Arntzen MØ, Svensson B, Vaaje-Kolstad G, Abou Hachem M.

Biotechnol Biofuels. 2016 Sep 1;9(1):187. doi: 10.1186/s13068-016-0604-0. eCollection 2016.

18.

A novel analytical method for d-glucosamine quantification and its application in the analysis of chitosan degradation by a minimal enzyme cocktail.

Mekasha S, Toupalová H, Linggadjaja E, Tolani HA, Anděra L, Arntzen MØ, Vaaje-Kolstad G, Eijsink VG, Agger JW.

Carbohydr Res. 2016 Oct 4;433:18-24. doi: 10.1016/j.carres.2016.07.003. Epub 2016 Jul 4.

PMID:
27423879
19.

Proteomic investigation of the secretome of Cellvibrio japonicus during growth on chitin.

Tuveng TR, Arntzen MØ, Bengtsson O, Gardner JG, Vaaje-Kolstad G, Eijsink VG.

Proteomics. 2016 Jul;16(13):1904-14. doi: 10.1002/pmic.201500419. Epub 2016 May 30.

PMID:
27169553
20.

Gluten-specific antibodies of celiac disease gut plasma cells recognize long proteolytic fragments that typically harbor T-cell epitopes.

Dørum S, Steinsbø Ø, Bergseng E, Arntzen MØ, de Souza GA, Sollid LM.

Sci Rep. 2016 May 5;6:25565. doi: 10.1038/srep25565.

21.

Simultaneous analysis of C1 and C4 oxidized oligosaccharides, the products of lytic polysaccharide monooxygenases acting on cellulose.

Westereng B, Arntzen MØ, Aachmann FL, Várnai A, Eijsink VG, Agger JW.

J Chromatogr A. 2016 May 6;1445:46-54. doi: 10.1016/j.chroma.2016.03.064. Epub 2016 Mar 25.

PMID:
27059395
22.

A novel proteomics sample preparation method for secretome analysis of Hypocrea jecorina growing on insoluble substrates.

Bengtsson O, Arntzen MØ, Mathiesen G, Skaugen M, Eijsink VGH.

J Proteomics. 2016 Jan 10;131:104-112. doi: 10.1016/j.jprot.2015.10.017. Epub 2015 Oct 23.

PMID:
26477388
23.

Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells.

Bousquet PA, Sandvik JA, Arntzen MØ, Jeppesen Edin NF, Christoffersen S, Krengel U, Pettersen EO, Thiede B.

Int J Proteomics. 2015;2015:678527. doi: 10.1155/2015/678527. Epub 2015 Sep 2.

24.

The impact of carbon-13 and deuterium on relative quantification of proteins using stable isotope diethyl labeling.

Koehler CJ, Arntzen MØ, Thiede B.

Rapid Commun Mass Spectrom. 2015 May 15;29(9):830-6. doi: 10.1002/rcm.7170.

PMID:
26377011
25.

Consolidation of proteomics data in the Cancer Proteomics database.

Arntzen MØ, Boddie P, Frick R, Koehler CJ, Thiede B.

Proteomics. 2015 Nov;15(22):3765-71. doi: 10.1002/pmic.201500144. Epub 2015 Oct 26.

PMID:
26316313
26.

Proteomic Investigation of the Response of Enterococcus faecalis V583 when Cultivated in Urine.

Arntzen MØ, Karlskås IL, Skaugen M, Eijsink VG, Mathiesen G.

PLoS One. 2015 Apr 27;10(4):e0126694. doi: 10.1371/journal.pone.0126694. eCollection 2015.

27.

Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoires.

Bergseng E, Dørum S, Arntzen MØ, Nielsen M, Nygård S, Buus S, de Souza GA, Sollid LM.

Immunogenetics. 2015 Feb;67(2):73-84. doi: 10.1007/s00251-014-0819-9. Epub 2014 Dec 12.

28.

Experimental and computational analysis of the secretome of the hyperthermophilic archaeon Pyrococcus furiosus.

Schmid G, Mathiesen G, Arntzen MO, Eijsink VG, Thomm M.

Extremophiles. 2013 Nov;17(6):921-30. doi: 10.1007/s00792-013-0574-0. Epub 2013 Aug 27.

29.

Quantitative profiling of tyrosine phosphorylation revealed changes in the activity of the T cell receptor signaling pathway upon cisplatin-induced apoptosis.

Størvold GL, Landskron J, Strozynski M, Arntzen MØ, Koehler CJ, Kalland ME, Taskén K, Thiede B.

J Proteomics. 2013 Oct 8;91:344-57. doi: 10.1016/j.jprot.2013.07.019. Epub 2013 Aug 7.

PMID:
23933134
30.

Cell death proteomics database: consolidating proteomics data on cell death.

Arntzen MØ, Bull VH, Thiede B.

J Proteome Res. 2013 May 3;12(5):2206-13. doi: 10.1021/pr4000703. Epub 2013 Apr 10.

PMID:
23537399
31.

An approach for triplex-isobaric peptide termini labeling (triplex-IPTL).

Koehler CJ, Arntzen MØ, de Souza GA, Thiede B.

Anal Chem. 2013 Feb 19;85(4):2478-85. doi: 10.1021/ac3035508. Epub 2013 Jan 29.

PMID:
23316706
32.

A rapid approach for isobaric peptide termini labeling.

Koehler CJ, Arntzen MO, Treumann A, Thiede B.

Methods Mol Biol. 2012;893:129-41. doi: 10.1007/978-1-61779-885-6_10.

PMID:
22665299
33.

Extracellular identification of a processed type II ComR/ComS pheromone of Streptococcus mutans.

Khan R, Rukke HV, Ricomini Filho AP, Fimland G, Arntzen MØ, Thiede B, Petersen FC.

J Bacteriol. 2012 Aug;194(15):3781-8. doi: 10.1128/JB.00624-12. Epub 2012 May 18.

34.

MiR-133b targets antiapoptotic genes and enhances death receptor-induced apoptosis.

Patron JP, Fendler A, Bild M, Jung U, Müller H, Arntzen MØ, Piso C, Stephan C, Thiede B, Mollenkopf HJ, Jung K, Kaufmann SH, Schreiber J.

PLoS One. 2012;7(4):e35345. doi: 10.1371/journal.pone.0035345. Epub 2012 Apr 20.

35.

Comparison of data analysis parameters and MS/MS fragmentation techniques for quantitative proteome analysis using isobaric peptide termini labeling (IPTL).

Koehler CJ, Arntzen MØ, Treumann A, Thiede B.

Anal Bioanal Chem. 2012 Sep;404(4):1103-14. doi: 10.1007/s00216-012-5949-z. Epub 2012 Mar 31.

PMID:
22460078
36.

ApoptoProteomics, an integrated database for analysis of proteomics data obtained from apoptotic cells.

Arntzen MØ, Thiede B.

Mol Cell Proteomics. 2012 Feb;11(2):M111.010447. doi: 10.1074/mcp.M111.010447. Epub 2011 Nov 8.

37.

Quantitative proteome analysis using isobaric peptide termini labeling (IPTL).

Arntzen MO, Koehler CJ, Treumann A, Thiede B.

Methods Mol Biol. 2011;753:65-76. doi: 10.1007/978-1-61779-148-2_5.

PMID:
21604116
38.

Isobaric peptide termini labeling utilizing site-specific N-terminal succinylation.

Koehler CJ, Arntzen MØ, Strozynski M, Treumann A, Thiede B.

Anal Chem. 2011 Jun 15;83(12):4775-81. doi: 10.1021/ac200229w. Epub 2011 May 16.

PMID:
21528900
39.

Mixed oxide coatings for optics.

Stenzel O, Wilbrandt S, Schürmann M, Kaiser N, Ehlers H, Mende M, Ristau D, Bruns S, Vergöhl M, Stolze M, Held M, Niederwald H, Koch T, Riggers W, Burdack P, Mark G, Schäfer R, Mewes S, Bischoff M, Arntzen M, Eisenkrämer F, Lappschies M, Jakobs S, Koch S, Baumgarten B, Tünnermann A.

Appl Opt. 2011 Mar 20;50(9):C69-74. doi: 10.1364/AO.50.000C69.

PMID:
21460985
40.

Assessing high affinity binding to HLA-DQ2.5 by a novel peptide library based approach.

Jüse U, Arntzen M, Højrup P, Fleckenstein B, Sollid LM.

Bioorg Med Chem. 2011 Apr 1;19(7):2470-7. doi: 10.1016/j.bmc.2011.01.057. Epub 2011 Feb 2.

PMID:
21382721
41.

The preferred substrates for transglutaminase 2 in a complex wheat gluten digest are Peptide fragments harboring celiac disease T-cell epitopes.

Dørum S, Arntzen MØ, Qiao SW, Holm A, Koehler CJ, Thiede B, Sollid LM, Fleckenstein B.

PLoS One. 2010 Nov 19;5(11):e14056. doi: 10.1371/journal.pone.0014056.

42.

IsobariQ: software for isobaric quantitative proteomics using IPTL, iTRAQ, and TMT.

Arntzen MØ, Koehler CJ, Barsnes H, Berven FS, Treumann A, Thiede B.

J Proteome Res. 2011 Feb 4;10(2):913-20. doi: 10.1021/pr1009977. Epub 2010 Nov 29.

PMID:
21067241
43.

Identification of nuclear phosphatidylinositol 4,5-bisphosphate-interacting proteins by neomycin extraction.

Lewis AE, Sommer L, Arntzen MØ, Strahm Y, Morrice NA, Divecha N, D'Santos CS.

Mol Cell Proteomics. 2011 Feb;10(2):M110.003376. doi: 10.1074/mcp.M110.003376. Epub 2010 Nov 3.

44.

Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database.

de Souza GA, Arntzen MØ, Fortuin S, Schürch AC, Målen H, McEvoy CR, van Soolingen D, Thiede B, Warren RM, Wiker HG.

Mol Cell Proteomics. 2011 Jan;10(1):M110.002527. doi: 10.1074/mcp.M110.002527. Epub 2010 Oct 28.

45.

MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes.

de Souza GA, Arntzen MØ, Wiker HG.

Bioinformatics. 2010 Mar 1;26(5):698-9. doi: 10.1093/bioinformatics/btq004. Epub 2010 Jan 14.

46.

POSTMan (POST-translational modification analysis), a software application for PTM discovery.

Arntzen MØ, Osland CL, Raa CR, Kopperud R, Døskeland SO, Lewis AE, D'Santos CS.

Proteomics. 2009 Mar;9(5):1400-6. doi: 10.1002/pmic.200800500.

PMID:
19253288
47.

Membrane and membrane-associated proteins in Triton X-114 extracts of Mycobacterium bovis BCG identified using a combination of gel-based and gel-free fractionation strategies.

Målen H, Berven FS, Søfteland T, Arntzen MØ, D'Santos CS, De Souza GA, Wiker HG.

Proteomics. 2008 May;8(9):1859-70. doi: 10.1002/pmic.200700528.

PMID:
18442171
48.

[Activating care. Theory and practice in community nursing].

Arntzen M.

Dtsch Krankenpflegez. 1992 Oct;45(10):663-9. German. No abstract available.

PMID:
1425223

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