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Items: 16

1.

Cooption of the pteridine biosynthesis pathway underlies the diversification of embryonic colors in water striders.

Vargas-Lowman A, Armisen D, Burguez Floriano CF, da Rocha Silva Cordeiro I, Viala S, Bouchet M, Bernard M, Le Bouquin A, Santos ME, Berlioz-Barbier A, Salvador A, Figueiredo Moreira FF, Bonneton F, Khila A.

Proc Natl Acad Sci U S A. 2019 Sep 17;116(38):19046-19054. doi: 10.1073/pnas.1908316116. Epub 2019 Sep 4.

2.

Tracing the ancestry of modern bread wheats.

Pont C, Leroy T, Seidel M, Tondelli A, Duchemin W, Armisen D, Lang D, Bustos-Korts D, Goué N, Balfourier F, Molnár-Láng M, Lage J, Kilian B, Özkan H, Waite D, Dyer S, Letellier T, Alaux M; Wheat and Barley Legacy for Breeding Improvement (WHEALBI) consortium, Russell J, Keller B, van Eeuwijk F, Spannagl M, Mayer KFX, Waugh R, Stein N, Cattivelli L, Haberer G, Charmet G, Salse J.

Nat Genet. 2019 May;51(5):905-911. doi: 10.1038/s41588-019-0393-z. Epub 2019 May 1.

PMID:
31043760
3.

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome.

Panfilio KA, Vargas Jentzsch IM, Benoit JB, Erezyilmaz D, Suzuki Y, Colella S, Robertson HM, Poelchau MF, Waterhouse RM, Ioannidis P, Weirauch MT, Hughes DST, Murali SC, Werren JH, Jacobs CGC, Duncan EJ, Armisén D, Vreede BMI, Baa-Puyoulet P, Berger CS, Chang CC, Chao H, Chen MM, Chen YT, Childers CP, Chipman AD, Cridge AG, Crumière AJJ, Dearden PK, Didion EM, Dinh H, Doddapaneni HV, Dolan A, Dugan S, Extavour CG, Febvay G, Friedrich M, Ginzburg N, Han Y, Heger P, Holmes CJ, Horn T, Hsiao YM, Jennings EC, Johnston JS, Jones TE, Jones JW, Khila A, Koelzer S, Kovacova V, Leask M, Lee SL, Lee CY, Lovegrove MR, Lu HL, Lu Y, Moore PJ, Munoz-Torres MC, Muzny DM, Palli SR, Parisot N, Pick L, Porter ML, Qu J, Refki PN, Richter R, Rivera-Pomar R, Rosendale AJ, Roth S, Sachs L, Santos ME, Seibert J, Sghaier E, Shukla JN, Stancliffe RJ, Tidswell O, Traverso L, van der Zee M, Viala S, Worley KC, Zdobnov EM, Gibbs RA, Richards S.

Genome Biol. 2019 Apr 2;20(1):64. doi: 10.1186/s13059-019-1660-0.

4.

Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects.

Petersen M, Armisén D, Gibbs RA, Hering L, Khila A, Mayer G, Richards S, Niehuis O, Misof B.

BMC Evol Biol. 2019 Jan 9;19(1):11. doi: 10.1186/s12862-018-1324-9.

5.

The achaete-scute complex contains a single gene that controls bristle development in the semi-aquatic bugs.

Finet C, Decaras A, Armisén D, Khila A.

Proc Biol Sci. 2018 Nov 28;285(1892). pii: 20182387. doi: 10.1098/rspb.2018.2387.

6.

The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water.

Armisén D, Rajakumar R, Friedrich M, Benoit JB, Robertson HM, Panfilio KA, Ahn SJ, Poelchau MF, Chao H, Dinh H, Doddapaneni HV, Dugan S, Gibbs RA, Hughes DST, Han Y, Lee SL, Murali SC, Muzny DM, Qu J, Worley KC, Munoz-Torres M, Abouheif E, Bonneton F, Chen T, Chiang LM, Childers CP, Cridge AG, Crumière AJJ, Decaras A, Didion EM, Duncan EJ, Elpidina EN, Favé MJ, Finet C, Jacobs CGC, Cheatle Jarvela AM, Jennings EC, Jones JW, Lesoway MP, Lovegrove MR, Martynov A, Oppert B, Lillico-Ouachour A, Rajakumar A, Refki PN, Rosendale AJ, Santos ME, Toubiana W, van der Zee M, Vargas Jentzsch IM, Lowman AV, Viala S, Richards S, Khila A.

BMC Genomics. 2018 Nov 21;19(1):832. doi: 10.1186/s12864-018-5163-2.

7.

Diversity in Morphology and Locomotory Behavior Is Associated with Niche Expansion in the Semi-aquatic Bugs.

Crumière AJJ, Santos ME, Sémon M, Armisén D, Moreira FFF, Khila A.

Curr Biol. 2016 Dec 19;26(24):3336-3342. doi: 10.1016/j.cub.2016.09.061. Epub 2016 Dec 8.

8.

Unique features of a global human ectoparasite identified through sequencing of the bed bug genome.

Benoit JB, Adelman ZN, Reinhardt K, Dolan A, Poelchau M, Jennings EC, Szuter EM, Hagan RW, Gujar H, Shukla JN, Zhu F, Mohan M, Nelson DR, Rosendale AJ, Derst C, Resnik V, Wernig S, Menegazzi P, Wegener C, Peschel N, Hendershot JM, Blenau W, Predel R, Johnston PR, Ioannidis P, Waterhouse RM, Nauen R, Schorn C, Ott MC, Maiwald F, Johnston JS, Gondhalekar AD, Scharf ME, Peterson BF, Raje KR, Hottel BA, Armisén D, Crumière AJJ, Refki PN, Santos ME, Sghaier E, Viala S, Khila A, Ahn SJ, Childers C, Lee CY, Lin H, Hughes DST, Duncan EJ, Murali SC, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Wheeler D, Panfilio KA, Vargas Jentzsch IM, Vargo EL, Booth W, Friedrich M, Weirauch MT, Anderson MAE, Jones JW, Mittapalli O, Zhao C, Zhou JJ, Evans JD, Attardo GM, Robertson HM, Zdobnov EM, Ribeiro JMC, Gibbs RA, Werren JH, Palli SR, Schal C, Richards S.

Nat Commun. 2016 Feb 2;7:10165. doi: 10.1038/ncomms10165.

9.

Predator strike shapes antipredator phenotype through new genetic interactions in water striders.

Armisén D, Refki PN, Crumière AJ, Viala S, Toubiana W, Khila A.

Nat Commun. 2015 Sep 1;6:8153. doi: 10.1038/ncomms9153.

10.

Clade- and species-specific features of genome evolution in the Saccharomycetaceae.

Wolfe KH, Armisén D, Proux-Wera E, ÓhÉigeartaigh SS, Azam H, Gordon JL, Byrne KP.

FEMS Yeast Res. 2015 Aug;15(5):fov035. doi: 10.1093/femsyr/fov035. Epub 2015 Jun 10.

11.

Emergence of tissue sensitivity to Hox protein levels underlies the evolution of an adaptive morphological trait.

Refki PN, Armisén D, Crumière AJ, Viala S, Khila A.

Dev Biol. 2014 Aug 15;392(2):441-53. doi: 10.1016/j.ydbio.2014.05.021. Epub 2014 Jun 2.

12.

SearchDOGS bacteria, software that provides automated identification of potentially missed genes in annotated bacterial genomes.

Óhéigeartaigh SS, Armisén D, Byrne KP, Wolfe KH.

J Bacteriol. 2014 Jun;196(11):2030-42. doi: 10.1128/JB.01368-13. Epub 2014 Mar 21.

13.

A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach.

Proux-Wéra E, Armisén D, Byrne KP, Wolfe KH.

BMC Bioinformatics. 2012 Sep 17;13:237. doi: 10.1186/1471-2105-13-237.

14.

Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents.

Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP, Wolfe KH.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20024-9. doi: 10.1073/pnas.1112808108. Epub 2011 Nov 28.

15.

Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments.

OhÉigeartaigh SS, Armisén D, Byrne KP, Wolfe KH.

BMC Genomics. 2011 Jul 26;12:377. doi: 10.1186/1471-2164-12-377.

16.

Unique genes in plants: specificities and conserved features throughout evolution.

Armisén D, Lecharny A, Aubourg S.

BMC Evol Biol. 2008 Oct 10;8:280. doi: 10.1186/1471-2148-8-280.

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