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Items: 1 to 50 of 74

1.

Fe limitation decreases transcriptional regulation over the diel cycle in the model diatom Thalassiosira pseudonana.

Goldman JAL, Schatz MJ, Berthiaume CT, Coesel SN, Orellana MV, Armbrust EV.

PLoS One. 2019 Sep 11;14(9):e0222325. doi: 10.1371/journal.pone.0222325. eCollection 2019.

2.

Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean.

Wilson ST, Hawco NJ, Armbrust EV, Barone B, Björkman KM, Boysen AK, Burgos M, Burrell TJ, Casey JR, DeLong EF, Dugenne M, Dutkiewicz S, Dyhrman ST, Ferrón S, Follows MJ, Foreman RK, Funkey CP, Harke MJ, Henke BA, Hill CN, Hynes AM, Ingalls AE, Jahn O, Kelly RL, Knapp AN, Letelier RM, Ribalet F, Shimabukuro EM, Tabata RKS, Turk-Kubo KA, White AE, Zehr JP, John S, Karl DM.

Science. 2019 Sep 6;365(6457):1040-1044. doi: 10.1126/science.aax4767.

PMID:
31488692
3.

Sulfonate-based networks between eukaryotic phytoplankton and heterotrophic bacteria in the surface ocean.

Durham BP, Boysen AK, Carlson LT, Groussman RD, Heal KR, Cain KR, Morales RL, Coesel SN, Morris RM, Ingalls AE, Armbrust EV.

Nat Microbiol. 2019 Oct;4(10):1706-1715. doi: 10.1038/s41564-019-0507-5. Epub 2019 Jul 22.

PMID:
31332382
4.

Daily changes in phytoplankton lipidomes reveal mechanisms of energy storage in the open ocean.

Becker KW, Collins JR, Durham BP, Groussman RD, White AE, Fredricks HF, Ossolinski JE, Repeta DJ, Carini P, Armbrust EV, Van Mooy BAS.

Nat Commun. 2018 Dec 5;9(1):5179. doi: 10.1038/s41467-018-07346-z.

5.

Comparative Genomic Analysis of Vibrio diabolicus and Six Taxonomic Synonyms: A First Look at the Distribution and Diversity of the Expanded Species.

Turner JW, Tallman JJ, Macias A, Pinnell LJ, Elledge NC, Nasr Azadani D, Nilsson WB, Paranjpye RN, Armbrust EV, Strom MS.

Front Microbiol. 2018 Aug 15;9:1893. doi: 10.3389/fmicb.2018.01893. eCollection 2018.

6.

Accumulation of NO2 -cobalamin in nutrient-stressed ammonia-oxidizing archaea and in the oxygen deficient zone of the eastern tropical North Pacific.

Heal KR, Qin W, Amin SA, Devol AH, Moffett JW, Armbrust EV, Stahl DA, Ingalls AE.

Environ Microbiol Rep. 2018 Aug;10(4):453-457. doi: 10.1111/1758-2229.12664. Epub 2018 Aug 8.

PMID:
30022612
7.

Sexual ancestors generated an obligate asexual and globally dispersed clone within the model diatom species Thalassiosira pseudonana.

Koester JA, Berthiaume CT, Hiranuma N, Parker MS, Iverson V, Morales R, Ruzzo WL, Armbrust EV.

Sci Rep. 2018 Jul 12;8(1):10492. doi: 10.1038/s41598-018-28630-4.

8.

Ocean acidification conditions increase resilience of marine diatoms.

Valenzuela JJ, López García de Lomana A, Lee A, Armbrust EV, Orellana MV, Baliga NS.

Nat Commun. 2018 Jun 13;9(1):2328. doi: 10.1038/s41467-018-04742-3.

9.

Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations.

Qin W, Amin SA, Lundeen RA, Heal KR, Martens-Habbena W, Turkarslan S, Urakawa H, Costa KC, Hendrickson EL, Wang T, Beck DA, Tiquia-Arashiro SM, Taub F, Holmes AD, Vajrala N, Berube PM, Lowe TM, Moffett JW, Devol AH, Baliga NS, Arp DJ, Sayavedra-Soto LA, Hackett M, Armbrust EV, Ingalls AE, Stahl DA.

ISME J. 2018 Feb;12(2):508-519. doi: 10.1038/ismej.2017.186. Epub 2017 Oct 20.

10.

Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota.

Qin W, Heal KR, Ramdasi R, Kobelt JN, Martens-Habbena W, Bertagnolli AD, Amin SA, Walker CB, Urakawa H, Könneke M, Devol AH, Moffett JW, Armbrust EV, Jensen GJ, Ingalls AE, Stahl DA.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5067-5079. doi: 10.1099/ijsem.0.002416. Epub 2017 Oct 16.

PMID:
29034851
11.

Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera.

Wilson ST, Aylward FO, Ribalet F, Barone B, Casey JR, Connell PE, Eppley JM, Ferrón S, Fitzsimmons JN, Hayes CT, Romano AE, Turk-Kubo KA, Vislova A, Armbrust EV, Caron DA, Church MJ, Zehr JP, Karl DM, DeLong EF.

Nat Microbiol. 2017 Jul 31;2:17118. doi: 10.1038/nmicrobiol.2017.118.

PMID:
28758990
12.

Recognition cascade and metabolite transfer in a marine bacteria-phytoplankton model system.

Durham BP, Dearth SP, Sharma S, Amin SA, Smith CB, Campagna SR, Armbrust EV, Moran MA.

Environ Microbiol. 2017 Sep;19(9):3500-3513. doi: 10.1111/1462-2920.13834. Epub 2017 Jul 21.

PMID:
28631440
13.

Development of a molecular-based index for assessing iron status in bloom-forming pennate diatoms.

Marchetti A, Moreno CM, Cohen NR, Oleinikov I, deLong K, Twining BS, Armbrust EV, Lampe RH.

J Phycol. 2017 Aug;53(4):820-832. doi: 10.1111/jpy.12539. Epub 2017 May 10.

PMID:
28394444
14.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, Wu T, Barry KW, Falciatore A, Ferrante MI, Fortunato AE, Glöckner G, Gruber A, Hipkin R, Janech MG, Kroth PG, Leese F, Lindquist EA, Lyon BR, Martin J, Mayer C, Parker M, Quesneville H, Raymond JA, Uhlig C, Valas RE, Valentin KU, Worden AZ, Armbrust EV, Clark MD, Bowler C, Green BR, Moulton V, van Oosterhout C, Grigoriev IV.

Nature. 2017 Jan 26;541(7638):536-540. doi: 10.1038/nature20803. Epub 2017 Jan 16.

15.

Two distinct pools of B12 analogs reveal community interdependencies in the ocean.

Heal KR, Qin W, Ribalet F, Bertagnolli AD, Coyote-Maestas W, Hmelo LR, Moffett JW, Devol AH, Armbrust EV, Stahl DA, Ingalls AE.

Proc Natl Acad Sci U S A. 2017 Jan 10;114(2):364-369. doi: 10.1073/pnas.1608462114. Epub 2016 Dec 27.

16.

Probing the evolution, ecology and physiology of marine protists using transcriptomics.

Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ.

Nat Rev Microbiol. 2017 Jan;15(1):6-20. doi: 10.1038/nrmicro.2016.160. Epub 2016 Nov 21. Review.

PMID:
27867198
17.

The evolution of silicon transporters in diatoms.

Durkin CA, Koester JA, Bender SJ, Armbrust EV.

J Phycol. 2016 Oct;52(5):716-731. doi: 10.1111/jpy.12441. Epub 2016 Aug 31. Erratum in: J Phycol. 2018 Dec;54(6):765-766.

18.

Ubiquitous marine bacterium inhibits diatom cell division.

van Tol HM, Amin SA, Armbrust EV.

ISME J. 2017 Jan;11(1):31-42. doi: 10.1038/ismej.2016.112. Epub 2016 Sep 13.

19.

Scalable clustering algorithms for continuous environmental flow cytometry.

Hyrkas J, Clayton S, Ribalet F, Halperin D, Armbrust EV, Howe B.

Bioinformatics. 2016 Feb 1;32(3):417-23. doi: 10.1093/bioinformatics/btv594. Epub 2015 Oct 17.

PMID:
26476780
20.

Confounding effects of oxygen and temperature on the TEX86 signature of marine Thaumarchaeota.

Qin W, Carlson LT, Armbrust EV, Devol AH, Moffett JW, Stahl DA, Ingalls AE.

Proc Natl Acad Sci U S A. 2015 Sep 1;112(35):10979-84. doi: 10.1073/pnas.1501568112. Epub 2015 Aug 17.

21.

Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre.

Ribalet F, Swalwell J, Clayton S, Jiménez V, Sudek S, Lin Y, Johnson ZI, Worden AZ, Armbrust EV.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):8008-12. doi: 10.1073/pnas.1424279112. Epub 2015 Jun 15.

22.

Diversity and Evolutionary History of Iron Metabolism Genes in Diatoms.

Groussman RD, Parker MS, Armbrust EV.

PLoS One. 2015 Jun 8;10(6):e0129081. doi: 10.1371/journal.pone.0129081. eCollection 2015.

23.

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria.

Amin SA, Hmelo LR, van Tol HM, Durham BP, Carlson LT, Heal KR, Morales RL, Berthiaume CT, Parker MS, Djunaedi B, Ingalls AE, Parsek MR, Moran MA, Armbrust EV.

Nature. 2015 Jun 4;522(7554):98-101. doi: 10.1038/nature14488. Epub 2015 May 27.

PMID:
26017307
24.

Marine biology. Uncovering hidden worlds of ocean biodiversity.

Armbrust EV, Palumbi SR.

Science. 2015 May 22;348(6237):865-7. doi: 10.1126/science.aaa7378. No abstract available.

PMID:
25999494
25.

Cryptic carbon and sulfur cycling between surface ocean plankton.

Durham BP, Sharma S, Luo H, Smith CB, Amin SA, Bender SJ, Dearth SP, Van Mooy BA, Campagna SR, Kujawinski EB, Armbrust EV, Moran MA.

Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):453-7. doi: 10.1073/pnas.1413137112. Epub 2014 Dec 29.

26.

Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage.

Gruber A, Rocap G, Kroth PG, Armbrust EV, Mock T.

Plant J. 2015 Feb;81(3):519-28. doi: 10.1111/tpj.12734. Epub 2015 Jan 6.

27.

The production of nitric oxide by marine ammonia-oxidizing archaea and inhibition of archaeal ammonia oxidation by a nitric oxide scavenger.

Martens-Habbena W, Qin W, Horak RE, Urakawa H, Schauer AJ, Moffett JW, Armbrust EV, Ingalls AE, Devol AH, Stahl DA.

Environ Microbiol. 2015 Jul;17(7):2261-74. doi: 10.1111/1462-2920.12677. Epub 2015 Jan 27.

PMID:
25420929
28.

Determination of four forms of vitamin B12 and other B vitamins in seawater by liquid chromatography/tandem mass spectrometry.

Heal KR, Carlson LT, Devol AH, Armbrust EV, Moffett JW, Stahl DA, Ingalls AE.

Rapid Commun Mass Spectrom. 2014 Nov 30;28(22):2398-404. doi: 10.1002/rcm.7040.

PMID:
25303468
29.

Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation.

Qin W, Amin SA, Martens-Habbena W, Walker CB, Urakawa H, Devol AH, Ingalls AE, Moffett JW, Armbrust EV, Stahl DA.

Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):12504-9. doi: 10.1073/pnas.1324115111. Epub 2014 Aug 11.

30.

Microbiology. Taking the pulse of ocean microbes.

Armbrust EV.

Science. 2014 Jul 11;345(6193):134-5. doi: 10.1126/science.1256578. No abstract available.

PMID:
25013043
31.

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.

32.

The genetic potential for key biogeochemical processes in Arctic frost flowers and young sea ice revealed by metagenomic analysis.

Bowman JS, Berthiaume CT, Armbrust EV, Deming JW.

FEMS Microbiol Ecol. 2014 Aug;89(2):376-87. doi: 10.1111/1574-6941.12331. Epub 2014 Apr 16.

34.

Identification of G protein-coupled receptor signaling pathway proteins in marine diatoms using comparative genomics.

Port JA, Parker MS, Kodner RB, Wallace JC, Armbrust EV, Faustman EM.

BMC Genomics. 2013 Jul 24;14:503. doi: 10.1186/1471-2164-14-503.

35.

Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea.

Horak RE, Qin W, Schauer AJ, Armbrust EV, Ingalls AE, Moffett JW, Stahl DA, Devol AH.

ISME J. 2013 Oct;7(10):2023-33. doi: 10.1038/ismej.2013.75. Epub 2013 May 9.

36.

Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana.

Ashworth J, Coesel S, Lee A, Armbrust EV, Orellana MV, Baliga NS.

Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7518-23. doi: 10.1073/pnas.1300962110. Epub 2013 Apr 17.

37.

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.

Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJ, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Höppner MP, Ishida K, Kim E, Kořený L, Kroth PG, Liu Y, Malik SB, Maier UG, McRose D, Mock T, Neilson JA, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM.

Nature. 2012 Dec 6;492(7427):59-65. doi: 10.1038/nature11681. Epub 2012 Nov 28.

PMID:
23201678
38.

Positive selection within a diatom species acts on putative protein interactions and transcriptional regulation.

Koester JA, Swanson WJ, Armbrust EV.

Mol Biol Evol. 2013 Feb;30(2):422-34. doi: 10.1093/molbev/mss242. Epub 2012 Oct 23.

39.

Interactions between diatoms and bacteria.

Amin SA, Parker MS, Armbrust EV.

Microbiol Mol Biol Rev. 2012 Sep;76(3):667-84. doi: 10.1128/MMBR.00007-12. Review.

40.

Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability.

Marchetti A, Schruth DM, Durkin CA, Parker MS, Kodner RB, Berthiaume CT, Morales R, Allen AE, Armbrust EV.

Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):E317-25. doi: 10.1073/pnas.1118408109. Epub 2012 Jan 18.

41.

Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota.

Iverson V, Morris RM, Frazar CD, Berthiaume CT, Morales RL, Armbrust EV.

Science. 2012 Feb 3;335(6068):587-90. doi: 10.1126/science.1212665.

42.

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges.

Monier A, Welsh RM, Gentemann C, Weinstock G, Sodergren E, Armbrust EV, Eisen JA, Worden AZ.

Environ Microbiol. 2012 Jan;14(1):162-76. doi: 10.1111/j.1462-2920.2011.02576.x. Epub 2011 Sep 14.

43.

Coupled effects of light and nitrogen source on the urea cycle and nitrogen metabolism over a diel cycle in the marine diatom Thalassiosira pseudonana.

Bender SJ, Parker MS, Armbrust EV.

Protist. 2012 Mar;163(2):232-51. doi: 10.1016/j.protis.2011.07.008. Epub 2011 Aug 27.

PMID:
21873112
44.

flowPhyto: enabling automated analysis of microscopic algae from continuous flow cytometric data.

Ribalet F, Schruth DM, Armbrust EV.

Bioinformatics. 2011 Mar 1;27(5):732-3. doi: 10.1093/bioinformatics/btr003. Epub 2011 Jan 5.

PMID:
21208987
45.

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree.

Matsen FA, Kodner RB, Armbrust EV.

BMC Bioinformatics. 2010 Oct 30;11:538. doi: 10.1186/1471-2105-11-538.

46.

Unveiling a phytoplankton hotspot at a narrow boundary between coastal and offshore waters.

Ribalet F, Marchetti A, Hubbard KA, Brown K, Durkin CA, Morales R, Robert M, Swalwell JE, Tortell PD, Armbrust EV.

Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16571-6. doi: 10.1073/pnas.1005638107. Epub 2010 Sep 7.

47.

E. Virginia Armbrust. Interviewed by Laura L. Mays Hoopes.

Armbrust EV.

CBE Life Sci Educ. 2010 Fall;9(3):157-8. doi: 10.1187/cbe.10-06-0074. No abstract available.

48.

Digital expression profiling of novel diatom transcripts provides insight into their biological functions.

Maheswari U, Jabbari K, Petit JL, Porcel BM, Allen AE, Cadoret JP, De Martino A, Heijde M, Kaas R, La Roche J, Lopez PJ, Martin-Jézéquel V, Meichenin A, Mock T, Schnitzler Parker M, Vardi A, Armbrust EV, Weissenbach J, Katinka M, Bowler C.

Genome Biol. 2010;11(8):R85. doi: 10.1186/gb-2010-11-8-r85. Epub 2010 Aug 25.

49.

Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii (Bacillariophyta).

Koester JA, Swalwell JE, von Dassow P, Armbrust EV.

BMC Evol Biol. 2010 Jan 2;10:1. doi: 10.1186/1471-2148-10-1.

50.

The life of diatoms in the world's oceans.

Armbrust EV.

Nature. 2009 May 14;459(7244):185-92. doi: 10.1038/nature08057. Review.

PMID:
19444204

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