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Items: 22

1.

The First Single Particle Analysis Map Challenge: A Summary of the Assessments.

Heymann JB, Marabini R, Kazemi M, Sorzano COS, Holmdahl M, Mendez JH, Stagg SM, Jonic S, Palovcak E, Armache JP, Zhao J, Cheng Y, Pintilie G, Chiu W, Patwardhan A, Carazo JM.

J Struct Biol. 2018 Aug 13. pii: S1047-8477(18)30228-4. doi: 10.1016/j.jsb.2018.08.010. [Epub ahead of print]

PMID:
30114512
2.

Author Correction: Cryo-EM structure of a fungal mitochondrial calcium uniporter.

Nguyen NX, Armache JP, Lee C, Yang Y, Zeng W, Mootha VK, Cheng Y, Bai XC, Jiang Y.

Nature. 2018 Aug 14. doi: 10.1038/s41586-018-0427-1. [Epub ahead of print]

PMID:
30108362
3.

Cryo-EM structure of a fungal mitochondrial calcium uniporter.

Nguyen NX, Armache JP, Lee C, Yang Y, Zeng W, Mootha VK, Cheng Y, Bai XC, Jiang Y.

Nature. 2018 Jul;559(7715):570-574. doi: 10.1038/s41586-018-0333-6. Epub 2018 Jul 11. Erratum in: Nature. 2018 Aug 14;:.

PMID:
29995855
4.

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.

Zheng SQ, Palovcak E, Armache JP, Verba KA, Cheng Y, Agard DA.

Nat Methods. 2017 Apr;14(4):331-332. doi: 10.1038/nmeth.4193. Epub 2017 Feb 27. No abstract available.

5.

A saposin-lipoprotein nanoparticle system for membrane proteins.

Frauenfeld J, Löving R, Armache JP, Sonnen AF, Guettou F, Moberg P, Zhu L, Jegerschöld C, Flayhan A, Briggs JA, Garoff H, Löw C, Cheng Y, Nordlund P.

Nat Methods. 2016 Apr;13(4):345-51. doi: 10.1038/nmeth.3801. Epub 2016 Mar 7.

6.

Single-particle cryo-EM data acquisition by using direct electron detection camera.

Wu S, Armache JP, Cheng Y.

Microscopy (Oxf). 2016 Feb;65(1):35-41. doi: 10.1093/jmicro/dfv355. Epub 2015 Nov 6. Review.

7.

Structure of the TRPA1 ion channel suggests regulatory mechanisms.

Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D.

Nature. 2015 Sep 24;525(7570):552. doi: 10.1038/nature14871. Epub 2015 Jul 22. No abstract available.

PMID:
26200340
8.

Structure of the TRPA1 ion channel suggests regulatory mechanisms.

Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D.

Nature. 2015 Apr 23;520(7548):511-7. doi: 10.1038/nature14367. Epub 2015 Apr 8. Erratum in: Nature. 2015 Sep 24;525(7570):552.

9.

Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.

Gogala M, Becker T, Beatrix B, Armache JP, Barrio-Garcia C, Berninghausen O, Beckmann R.

Nature. 2014 Feb 6;506(7486):107-10. doi: 10.1038/nature12950.

PMID:
24499919
10.

Structures of the human and Drosophila 80S ribosome.

Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R.

Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.

PMID:
23636399
11.

Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution.

Armache JP, Anger AM, Márquez V, Franckenberg S, Fröhlich T, Villa E, Berninghausen O, Thomm M, Arnold GJ, Beckmann R, Wilson DN.

Nucleic Acids Res. 2013 Jan;41(2):1284-93. doi: 10.1093/nar/gks1259. Epub 2012 Dec 6.

12.

Solution structure of the natively assembled yeast ribosomal stalk determined by small-angle X-ray scattering.

Grela P, Gajda MJ, Armache JP, Beckmann R, Krokowski D, Svergun DI, Grankowski N, Tchórzewski M.

Biochem J. 2012 Jun 1;444(2):205-9. doi: 10.1042/BJ20120115.

PMID:
22458705
13.

Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.

Becker T, Franckenberg S, Wickles S, Shoemaker CJ, Anger AM, Armache JP, Sieber H, Ungewickell C, Berninghausen O, Daberkow I, Karcher A, Thomm M, Hopfner KP, Green R, Beckmann R.

Nature. 2012 Feb 22;482(7386):501-6. doi: 10.1038/nature10829.

PMID:
22358840
14.

The DARC site: a database of aligned ribosomal complexes.

Jarasch A, Dziuk P, Becker T, Armache JP, Hauser A, Wilson DN, Beckmann R.

Nucleic Acids Res. 2012 Jan;40(Database issue):D495-500. doi: 10.1093/nar/gkr824. Epub 2011 Oct 18.

15.

Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome.

Becker T, Armache JP, Jarasch A, Anger AM, Villa E, Sieber H, Motaal BA, Mielke T, Berninghausen O, Beckmann R.

Nat Struct Mol Biol. 2011 Jun;18(6):715-20. doi: 10.1038/nsmb.2057. Epub 2011 May 29.

PMID:
21623367
16.

Proteomic characterization of archaeal ribosomes reveals the presence of novel archaeal-specific ribosomal proteins.

Márquez V, Fröhlich T, Armache JP, Sohmen D, Dönhöfer A, Mikolajka A, Berninghausen O, Thomm M, Beckmann R, Arnold GJ, Wilson DN.

J Mol Biol. 2011 Feb 4;405(5):1215-32. doi: 10.1016/j.jmb.2010.11.055. Epub 2010 Dec 4.

PMID:
21134383
17.

Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.

Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Söding J, Westhof E, Wilson DN, Beckmann R.

Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19748-53. doi: 10.1073/pnas.1009999107. Epub 2010 Oct 27.

18.

Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome.

Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Söding J, Westhof E, Wilson DN, Beckmann R.

Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19754-9. doi: 10.1073/pnas.1010005107. Epub 2010 Oct 25.

19.

Mechanism of eIF6-mediated inhibition of ribosomal subunit joining.

Gartmann M, Blau M, Armache JP, Mielke T, Topf M, Beckmann R.

J Biol Chem. 2010 May 14;285(20):14848-51. doi: 10.1074/jbc.C109.096057. Epub 2010 Mar 31.

20.

alpha-Helical nascent polypeptide chains visualized within distinct regions of the ribosomal exit tunnel.

Bhushan S, Gartmann M, Halic M, Armache JP, Jarasch A, Mielke T, Berninghausen O, Wilson DN, Beckmann R.

Nat Struct Mol Biol. 2010 Mar;17(3):313-7. doi: 10.1038/nsmb.1756. Epub 2010 Feb 7.

PMID:
20139981
21.

Structural insight into nascent polypeptide chain-mediated translational stalling.

Seidelt B, Innis CA, Wilson DN, Gartmann M, Armache JP, Villa E, Trabuco LG, Becker T, Mielke T, Schulten K, Steitz TA, Beckmann R.

Science. 2009 Dec 4;326(5958):1412-5. doi: 10.1126/science.1177662. Epub 2009 Oct 29.

22.

Structure of monomeric yeast and mammalian Sec61 complexes interacting with the translating ribosome.

Becker T, Bhushan S, Jarasch A, Armache JP, Funes S, Jossinet F, Gumbart J, Mielke T, Berninghausen O, Schulten K, Westhof E, Gilmore R, Mandon EC, Beckmann R.

Science. 2009 Dec 4;326(5958):1369-73. doi: 10.1126/science.1178535. Epub 2009 Oct 29.

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