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Items: 46

1.

Active DNA Demethylation in Plants.

Parrilla-Doblas JT, Roldán-Arjona T, Ariza RR, Córdoba-Cañero D.

Int J Mol Sci. 2019 Sep 21;20(19). pii: E4683. doi: 10.3390/ijms20194683. Review.

2.

DNA Base Excision Repair in Plants: An Unfolding Story With Familiar and Novel Characters.

Roldán-Arjona T, Ariza RR, Córdoba-Cañero D.

Front Plant Sci. 2019 Aug 30;10:1055. doi: 10.3389/fpls.2019.01055. eCollection 2019. Review.

3.

Characterization of an AP endonuclease from sugarcane - ScARP1.

Cabral Medeiros NM, Córdoba-Cañero D, García-Gil CB, Ariza RR, Roldán-Arjona T, Scortecci KC.

Biochem Biophys Res Commun. 2019 Jun 30;514(3):926-932. doi: 10.1016/j.bbrc.2019.04.156. Epub 2019 May 10.

PMID:
31084932
4.

Monitoring base excision repair in Chlamydomonas reinhardtii cell extracts.

Morales-Ruiz T, Romero-Valenzuela ÁC, Vázquez-Grande VM, Roldán-Arjona T, Ariza RR, Córdoba-Cañero D.

DNA Repair (Amst). 2018 May;65:34-41. doi: 10.1016/j.dnarep.2018.02.011. Epub 2018 Mar 5.

PMID:
29547780
5.

Nonenzymatic release of N7-methylguanine channels repair of abasic sites into an AP endonuclease-independent pathway in Arabidopsis.

Barbado C, Córdoba-Cañero D, Ariza RR, Roldán-Arjona T.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):E916-E924. doi: 10.1073/pnas.1719497115. Epub 2018 Jan 16.

6.

DNA methylation reprogramming of human cancer cells by expression of a plant 5-methylcytosine DNA glycosylase.

Morales-Ruiz T, García-Ortiz MV, Devesa-Guerra I, Raya-Ruiz L, Tejedor JR, Bayón GF, Sierra MI, Fraga MF, Ariza RR, Roldán-Arjona T.

Epigenetics. 2018;13(1):95-107. doi: 10.1080/15592294.2017.1414128. Epub 2018 Feb 7.

7.

Dual control of ROS1-mediated active DNA demethylation by DNA damage-binding protein 2 (DDB2).

Córdoba-Cañero D, Cognat V, Ariza RR, Roldán Arjona T, Molinier J.

Plant J. 2017 Dec;92(6):1170-1181. doi: 10.1111/tpj.13753. Epub 2017 Nov 27.

8.

Targeted DNA demethylation in human cells by fusion of a plant 5-methylcytosine DNA glycosylase to a sequence-specific DNA binding domain.

Parrilla-Doblas JT, Ariza RR, Roldán-Arjona T.

Epigenetics. 2017 Apr 3;12(4):296-303. doi: 10.1080/15592294.2017.1294306. Epub 2017 Feb 23.

9.

An AP endonuclease functions in active DNA demethylation and gene imprinting in Arabidopsis [corrected].

Li Y, Córdoba-Cañero D, Qian W, Zhu X, Tang K, Zhang H, Ariza RR, Roldán-Arjona T, Zhu JK.

PLoS Genet. 2015 Jan 8;11(1):e1004905. doi: 10.1371/journal.pgen.1004905. eCollection 2015 Jan. Erratum in: PLoS Genet. 2015 Apr;11(4):e1005198.

10.

Arabidopsis ZDP DNA 3'-phosphatase and ARP endonuclease function in 8-oxoG repair initiated by FPG and OGG1 DNA glycosylases.

Córdoba-Cañero D, Roldán-Arjona T, Ariza RR.

Plant J. 2014 Sep;79(5):824-34. doi: 10.1111/tpj.12588. Epub 2014 Jul 25.

11.

Molecular characterization of a putative plant homolog of MBD4 DNA glycosylase.

Ramiro-Merina Á, Ariza RR, Roldán-Arjona T.

DNA Repair (Amst). 2013 Nov;12(11):890-8. doi: 10.1016/j.dnarep.2013.08.002. Epub 2013 Aug 30.

PMID:
23994068
12.

Early steps of active DNA demethylation initiated by ROS1 glycosylase require three putative helix-invading residues.

Parrilla-Doblas JT, Ponferrada-Marín MI, Roldán-Arjona T, Ariza RR.

Nucleic Acids Res. 2013 Oct;41(18):8654-64. doi: 10.1093/nar/gkt625. Epub 2013 Jul 18.

13.

The DNA repair protein XRCC1 functions in the plant DNA demethylation pathway by stimulating cytosine methylation (5-meC) excision, gap tailoring, and DNA ligation.

Martínez-Macías MI, Córdoba-Cañero D, Ariza RR, Roldán-Arjona T.

J Biol Chem. 2013 Feb 22;288(8):5496-505. doi: 10.1074/jbc.M112.427617. Epub 2013 Jan 11.

14.

Demethylation initiated by ROS1 glycosylase involves random sliding along DNA.

Ponferrada-Marín MI, Roldán-Arjona T, Ariza RR.

Nucleic Acids Res. 2012 Dec;40(22):11554-62. doi: 10.1093/nar/gks894. Epub 2012 Oct 2.

15.

Using Arabidopsis cell extracts to monitor repair of DNA base damage in vitro.

Córdoba-Cañero D, Roldán-Arjona T, Ariza RR.

Methods Mol Biol. 2012;920:263-77. doi: 10.1007/978-1-61779-998-3_18.

PMID:
22941609
16.

A DNA 3' phosphatase functions in active DNA demethylation in Arabidopsis.

Martínez-Macías MI, Qian W, Miki D, Pontes O, Liu Y, Tang K, Liu R, Morales-Ruiz T, Ariza RR, Roldán-Arjona T, Zhu JK.

Mol Cell. 2012 Feb 10;45(3):357-70. doi: 10.1016/j.molcel.2011.11.034.

17.

Arabidopsis ARP endonuclease functions in a branched base excision DNA repair pathway completed by LIG1.

Córdoba-Cañero D, Roldán-Arjona T, Ariza RR.

Plant J. 2011 Nov;68(4):693-702. doi: 10.1111/j.1365-313X.2011.04720.x. Epub 2011 Sep 13.

18.

A discontinuous DNA glycosylase domain in a family of enzymes that excise 5-methylcytosine.

Ponferrada-Marín MI, Parrilla-Doblas JT, Roldán-Arjona T, Ariza RR.

Nucleic Acids Res. 2011 Mar;39(4):1473-84. doi: 10.1093/nar/gkq982. Epub 2010 Oct 29.

19.

Methylation-independent DNA binding modulates specificity of Repressor of Silencing 1 (ROS1) and facilitates demethylation in long substrates.

Ponferrada-Marín MI, Martínez-Macías MI, Morales-Ruiz T, Roldán-Arjona T, Ariza RR.

J Biol Chem. 2010 Jul 23;285(30):23032-9. doi: 10.1074/jbc.M110.124578. Epub 2010 May 19.

20.

Arabidopsis uracil DNA glycosylase (UNG) is required for base excision repair of uracil and increases plant sensitivity to 5-fluorouracil.

Córdoba-Cañero D, Dubois E, Ariza RR, Doutriaux MP, Roldán-Arjona T.

J Biol Chem. 2010 Mar 5;285(10):7475-83. doi: 10.1074/jbc.M109.067173. Epub 2010 Jan 7.

21.

Single-nucleotide and long-patch base excision repair of DNA damage in plants.

Córdoba-Cañero D, Morales-Ruiz T, Roldán-Arjona T, Ariza RR.

Plant J. 2009 Nov;60(4):716-28. doi: 10.1111/j.1365-313X.2009.03994.x. Epub 2009 Aug 8.

22.

ROS1 5-methylcytosine DNA glycosylase is a slow-turnover catalyst that initiates DNA demethylation in a distributive fashion.

Ponferrada-Marín MI, Roldán-Arjona T, Ariza RR.

Nucleic Acids Res. 2009 Jul;37(13):4264-74. doi: 10.1093/nar/gkp390. Epub 2009 May 13.

23.

Repair and tolerance of oxidative DNA damage in plants.

Roldán-Arjona T, Ariza RR.

Mutat Res. 2009 Mar-Jun;681(2-3):169-79. doi: 10.1016/j.mrrev.2008.07.003. Epub 2008 Jul 29. Review.

PMID:
18707020
24.

Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks.

Ortega-Galisteo AP, Morales-Ruiz T, Ariza RR, Roldán-Arjona T.

Plant Mol Biol. 2008 Aug;67(6):671-81. doi: 10.1007/s11103-008-9346-0. Epub 2008 May 21.

PMID:
18493721
25.

The noncatalytic C-terminus of AtPOLK Y-family DNA polymerase affects synthesis fidelity, mismatch extension and translesion replication.

García-Ortiz MV, Roldán-Arjona T, Ariza RR.

FEBS J. 2007 Jul;274(13):3340-50. Epub 2007 Jun 5.

26.

DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases.

Morales-Ruiz T, Ortega-Galisteo AP, Ponferrada-Marín MI, Martínez-Macías MI, Ariza RR, Roldán-Arjona T.

Proc Natl Acad Sci U S A. 2006 May 2;103(18):6853-8. Epub 2006 Apr 19.

27.
28.

The photolyase gene from the plant pathogen Fusarium oxysporum f. sp. lycopersici is induced by visible light and alpha-tomatine from tomato plant.

Alejandre-Durán E, Roldán-Arjona T, Ariza RR, Ruiz-Rubio M.

Fungal Genet Biol. 2003 Nov;40(2):159-65.

PMID:
14516768
29.

DNA damage recognition and nucleotide excision repair in mammalian cells.

Wood RD, Araújo SJ, Ariza RR, Batty DP, Biggerstaff M, Evans E, Gaillard PH, Gunz D, Köberle B, Kuraoka I, Moggs JG, Sandall JK, Shivji MK.

Cold Spring Harb Symp Quant Biol. 2000;65:173-82. Review. No abstract available.

PMID:
12760031
30.

ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase.

Gong Z, Morales-Ruiz T, Ariza RR, Roldán-Arjona T, David L, Zhu JK.

Cell. 2002 Dec 13;111(6):803-14.

31.

An OGG1 orthologue encoding a functional 8-oxoguanine DNA glycosylase/lyase in Arabidopsis thaliana.

García-Ortiz MV, Ariza RR, Roldán-Arjona T.

Plant Mol Biol. 2001 Dec;47(6):795-804.

PMID:
11785940
32.

A chemiluminescent method for the detection of DNA glycosylase/lyase activity.

García-Ortiz MV, Ariza RR, Roldán-Arjona T.

Anal Biochem. 2001 Nov 1;298(1):127-9. No abstract available.

PMID:
11673906
33.
34.

Repair of an interstrand DNA cross-link initiated by ERCC1-XPF repair/recombination nuclease.

Kuraoka I, Kobertz WR, Ariza RR, Biggerstaff M, Essigmann JM, Wood RD.

J Biol Chem. 2000 Aug 25;275(34):26632-6.

35.

Xeroderma pigmentosum group F caused by a defect in a structure-specific DNA repair endonuclease.

Sijbers AM, de Laat WL, Ariza RR, Biggerstaff M, Wei YF, Moggs JG, Carter KC, Shell BK, Evans E, de Jong MC, Rademakers S, de Rooij J, Jaspers NG, Hoeijmakers JH, Wood RD.

Cell. 1996 Sep 6;86(5):811-22.

36.

Reversible protein phosphorylation modulates nucleotide excision repair of damaged DNA by human cell extracts.

Ariza RR, Keyse SM, Moggs JG, Wood RD.

Nucleic Acids Res. 1996 Feb 1;24(3):433-40.

37.
38.

Influence of DNA repair by ada and ogt alkyltransferases on the mutational specificity of alkylating agents.

Roldán-Arjona T, Luque-Romero FL, Ariza RR, Jurado J, Pueyo C.

Mol Carcinog. 1994 Apr;9(4):200-9.

PMID:
8148053
39.

Fpg protein protects Escherichia coli K-12 from mutation induction by the carcinogen 4-nitroquinoline 1-oxide.

Ruiz-Laguna J, Ariza RR, Prieto-Alamo MJ, Boiteux S, Pueyo C.

Carcinogenesis. 1994 Mar;15(3):425-9.

PMID:
8118923
40.
41.

A method for selection of forward mutations in supF gene carried by shuttle-vector plasmids.

Ariza RR, Roldán-Arjona T, Hera C, Pueyo C.

Carcinogenesis. 1993 Feb;14(2):303-5.

PMID:
8435871
42.
43.

Study on the mutagenicity of brandy with the Ara test.

Ariza RR, Serrano A, Pueyo C.

Mutagenesis. 1992 Jan;7(1):77-81.

PMID:
1635459
44.
45.

Mutagenicity of red wine in the L-arabinose resistance test with Salmonella typhimurium.

Dorado G, Ariza RR, Pueyo C.

Mutagenesis. 1988 Nov;3(6):497-502.

PMID:
3070289
46.

Study of the causes of direct-acting mutagenicity in coffee and tea using the Ara test in Salmonella typhimurium.

Ariza RR, Dorado G, Barbancho M, Pueyo C.

Mutat Res. 1988 Sep;201(1):89-96.

PMID:
3047575

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