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Items: 1 to 50 of 137

1.

Significance of a histone-like protein with its native structure for the diagnosis of asymptomatic tuberculosis.

Ohara Y, Ozeki Y, Tateishi Y, Mashima T, Arisaka F, Tsunaka Y, Fujiwara Y, Nishiyama A, Yoshida Y, Kitadokoro K, Kobayashi H, Kaneko Y, Nakagawa I, Maekura R, Yamamoto S, Katahira M, Matsumoto S.

PLoS One. 2018 Oct 25;13(10):e0204160. doi: 10.1371/journal.pone.0204160. eCollection 2018.

2.

Forty years of research on the assembly and infection process of bacteriophage.

Arisaka F.

Biophys Rev. 2018 Apr;10(2):131-136. doi: 10.1007/s12551-018-0396-5. Epub 2018 Feb 6. Review.

3.

Molecular assembly and structure of the bacteriophage T4 tail.

Arisaka F, Yap ML, Kanamaru S, Rossmann MG.

Biophys Rev. 2016 Dec;8(4):385-396. doi: 10.1007/s12551-016-0230-x. Epub 2016 Nov 5. Review.

4.

Measurement of amyloid formation by turbidity assay-seeing through the cloud.

Zhao R, So M, Maat H, Ray NJ, Arisaka F, Goto Y, Carver JA, Hall D.

Biophys Rev. 2016;8(4):445-471. doi: 10.1007/s12551-016-0233-7. Epub 2016 Nov 23. Review.

5.

Crystal structure of a crustacean hyperglycemic hormone (CHH) precursor suggests structural variety in the C-terminal regions of CHH superfamily members.

Tsutsui N, Sakamoto T, Arisaka F, Tanokura M, Nagasawa H, Nagata K.

FEBS J. 2016 Dec;283(23):4325-4339. doi: 10.1111/febs.13926. Epub 2016 Nov 2.

6.

Impact of structural polymorphism for the Helicobacter pylori CagA oncoprotein on binding to polarity-regulating kinase PAR1b.

Nishikawa H, Hayashi T, Arisaka F, Senda T, Hatakeyama M.

Sci Rep. 2016 Jul 22;6:30031. doi: 10.1038/srep30031.

7.

Unusual Reversible Oligomerization of Unfolded Dengue Envelope Protein Domain 3 at High Temperatures and Its Abolition by a Point Mutation.

Saotome T, Nakamura S, Islam MM, Nakazawa A, Dellarole M, Arisaka F, Kidokoro S, Kuroda Y.

Biochemistry. 2016 Aug 16;55(32):4469-75. doi: 10.1021/acs.biochem.6b00431. Epub 2016 Aug 4.

PMID:
27433922
8.

Role of bacteriophage T4 baseplate in regulating assembly and infection.

Yap ML, Klose T, Arisaka F, Speir JA, Veesler D, Fokine A, Rossmann MG.

Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):2654-9. doi: 10.1073/pnas.1601654113. Epub 2016 Feb 29.

9.

Protein aggregate turbidity: Simulation of turbidity profiles for mixed-aggregation reactions.

Hall D, Zhao R, Dehlsen I, Bloomfield N, Williams SR, Arisaka F, Goto Y, Carver JA.

Anal Biochem. 2016 Apr 1;498:78-94. doi: 10.1016/j.ab.2015.11.021. Epub 2016 Jan 4.

PMID:
26763936
10.

Development of a Model Protein Interaction Pair as a Benchmarking Tool for the Quantitative Analysis of 2-Site Protein-Protein Interactions.

Yamniuk AP, Newitt JA, Doyle ML, Arisaka F, Giannetti AM, Hensley P, Myszka DG, Schwarz FP, Thomson JA, Eisenstein E.

J Biomol Tech. 2015 Dec;26(4):125-41. doi: 10.7171/jbt.15-2604-001. Epub 2015 Oct 29.

11.

Molecular Assembly of Wheat Gliadins into Nanostructures: A Small-Angle X-ray Scattering Study of Gliadins in Distilled Water over a Wide Concentration Range.

Sato N, Matsumiya A, Higashino Y, Funaki S, Kitao Y, Oba Y, Inoue R, Arisaka F, Sugiyama M, Urade R.

J Agric Food Chem. 2015 Oct 7;63(39):8715-21. doi: 10.1021/acs.jafc.5b02902. Epub 2015 Sep 24.

PMID:
26365302
12.

A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation.

Zhao H, Ghirlando R, Alfonso C, Arisaka F, Attali I, Bain DL, Bakhtina MM, Becker DF, Bedwell GJ, Bekdemir A, Besong TM, Birck C, Brautigam CA, Brennerman W, Byron O, Bzowska A, Chaires JB, Chaton CT, Cölfen H, Connaghan KD, Crowley KA, Curth U, Daviter T, Dean WL, Díez AI, Ebel C, Eckert DM, Eisele LE, Eisenstein E, England P, Escalante C, Fagan JA, Fairman R, Finn RM, Fischle W, de la Torre JG, Gor J, Gustafsson H, Hall D, Harding SE, Cifre JG, Herr AB, Howell EE, Isaac RS, Jao SC, Jose D, Kim SJ, Kokona B, Kornblatt JA, Kosek D, Krayukhina E, Krzizike D, Kusznir EA, Kwon H, Larson A, Laue TM, Le Roy A, Leech AP, Lilie H, Luger K, Luque-Ortega JR, Ma J, May CA, Maynard EL, Modrak-Wojcik A, Mok YF, Mücke N, Nagel-Steger L, Narlikar GJ, Noda M, Nourse A, Obsil T, Park CK, Park JK, Pawelek PD, Perdue EE, Perkins SJ, Perugini MA, Peterson CL, Peverelli MG, Piszczek G, Prag G, Prevelige PE, Raynal BD, Rezabkova L, Richter K, Ringel AE, Rosenberg R, Rowe AJ, Rufer AC, Scott DJ, Seravalli JG, Solovyova AS, Song R, Staunton D, Stoddard C, Stott K, Strauss HM, Streicher WW, Sumida JP, Swygert SG, Szczepanowski RH, Tessmer I, Toth RT 4th, Tripathy A, Uchiyama S, Uebel SF, Unzai S, Gruber AV, von Hippel PH, Wandrey C, Wang SH, Weitzel SE, Wielgus-Kutrowska B, Wolberger C, Wolff M, Wright E, Wu YS, Wubben JM, Schuck P.

PLoS One. 2015 May 21;10(5):e0126420. doi: 10.1371/journal.pone.0126420. eCollection 2015.

13.

NADH oxidase and alkyl hydroperoxide reductase subunit C (peroxiredoxin) from Amphibacillus xylanus form an oligomeric assembly.

Arai T, Kimata S, Mochizuki D, Hara K, Zako T, Odaka M, Yohda M, Arisaka F, Kanamaru S, Matsumoto T, Yajima S, Sato J, Kawasaki S, Niimura Y.

FEBS Open Bio. 2015 Feb 7;5:124-31. doi: 10.1016/j.fob.2015.01.005. eCollection 2015.

14.

Asymmetrically fused polyoxometalate-silver alkynide composite cluster.

Kurasawa M, Arisaka F, Ozeki T.

Inorg Chem. 2015 Feb 16;54(4):1650-4. doi: 10.1021/ic502644v. Epub 2015 Jan 13.

PMID:
25586879
15.

Conformational stability, reversibility and heat-induced aggregation of α-1-acid glycoprotein.

Iwura T, Fukuda J, Yamazaki K, Arisaka F.

J Biochem. 2014 Dec;156(6):345-52. doi: 10.1093/jb/mvu050. Epub 2014 Aug 20.

PMID:
25147193
16.

Plasma membrane translocation of a protein needle based on a triple-stranded β-helix motif.

Sanghamitra NJ, Inaba H, Arisaka F, Ohtan Wang D, Kanamaru S, Kitagawa S, Ueno T.

Mol Biosyst. 2014 Oct;10(10):2677-83. doi: 10.1039/c4mb00293h.

PMID:
25082560
17.

Structure of the 3.3MDa, in vitro assembled, hubless bacteriophage T4 baseplate.

Yap ML, Klose T, Plevka P, Aksyuk A, Zhang X, Arisaka F, Rossmann MG.

J Struct Biol. 2014 Aug;187(2):95-102. doi: 10.1016/j.jsb.2014.06.008. Epub 2014 Jul 3.

18.

Cooperative binding of the outer arm-docking complex underlies the regular arrangement of outer arm dynein in the axoneme.

Owa M, Furuta A, Usukura J, Arisaka F, King SM, Witman GB, Kamiya R, Wakabayashi K.

Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9461-6. doi: 10.1073/pnas.1403101111. Epub 2014 Jun 16.

19.

Structural basis of Sec-independent membrane protein insertion by YidC.

Kumazaki K, Chiba S, Takemoto M, Furukawa A, Nishiyama K, Sugano Y, Mori T, Dohmae N, Hirata K, Nakada-Nakura Y, Maturana AD, Tanaka Y, Mori H, Sugita Y, Arisaka F, Ito K, Ishitani R, Tsukazaki T, Nureki O.

Nature. 2014 May 22;509(7501):516-20. doi: 10.1038/nature13167. Epub 2014 Apr 16.

PMID:
24739968
20.

Role of positions e and g in the fibrous assembly formation of an amphipathic α-helix-forming polypeptide.

Takei T, Tsumoto K, Yoshino M, Kojima S, Yazaki K, Ueda T, Takei T, Arisaka F, Miura K.

Biopolymers. 2014 May;102(3):260-72. doi: 10.1002/bip.22479.

PMID:
24615557
21.

Structure and properties of the C-terminal β-helical domain of VgrG protein from Escherichia coli O157.

Uchida K, Leiman PG, Arisaka F, Kanamaru S.

J Biochem. 2014 Mar;155(3):173-82. doi: 10.1093/jb/mvt109. Epub 2013 Dec 3.

PMID:
24307403
22.

Assembly of pyrene-modified DNA/RNA duplexes incorporating a G-rich single strand region.

Seio K, Tokugawa M, Tsunoda H, Ohkubo A, Arisaka F, Sekine M.

Bioorg Med Chem Lett. 2013 Dec 15;23(24):6822-4. doi: 10.1016/j.bmcl.2013.10.012. Epub 2013 Oct 10.

PMID:
24183539
23.

Atg38 is required for autophagy-specific phosphatidylinositol 3-kinase complex integrity.

Araki Y, Ku WC, Akioka M, May AI, Hayashi Y, Arisaka F, Ishihama Y, Ohsumi Y.

J Cell Biol. 2013 Oct 28;203(2):299-313. doi: 10.1083/jcb.201304123.

24.

Intermolecular interactions and conformation of antibody dimers present in IgG1 biopharmaceuticals.

Iwura T, Fukuda J, Yamazaki K, Kanamaru S, Arisaka F.

J Biochem. 2014 Jan;155(1):63-71. doi: 10.1093/jb/mvt095. Epub 2013 Oct 22.

PMID:
24155259
25.

Protein interactions in the assembly of the tail of bacteriophage T4.

Arisaka F, Kanamaru S.

Biophys Rev. 2013 Jun;5(2):79-84. doi: 10.1007/s12551-013-0114-2. Epub 2013 Apr 24. Review.

26.

The molecular architecture of the bacteriophage T4 neck.

Fokine A, Zhang Z, Kanamaru S, Bowman VD, Aksyuk AA, Arisaka F, Rao VB, Rossmann MG.

J Mol Biol. 2013 May 27;425(10):1731-44. doi: 10.1016/j.jmb.2013.02.012. Epub 2013 Feb 19.

27.

Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm.

Nozawa K, Ishitani R, Yoshihisa T, Sato M, Arisaka F, Kanamaru S, Dohmae N, Mangroo D, Senger B, Becker HD, Nureki O.

Nucleic Acids Res. 2013 Apr 1;41(6):3901-14. doi: 10.1093/nar/gkt010. Epub 2013 Feb 8.

28.

Semi-synthesis of an artificial scandium(III) enzyme with a β-helical bio-nanotube.

Inaba H, Kanamaru S, Arisaka F, Kitagawa S, Ueno T.

Dalton Trans. 2012 Oct 7;41(37):11424-7. doi: 10.1039/c2dt31030a. Epub 2012 Aug 14.

PMID:
22890408
29.

Indolepyruvate ferredoxin oxidoreductase: An oxygen-sensitive iron-sulfur enzyme from the hyperthermophilic archaeon Thermococcus profundus.

Ozawa Y, Siddiqui MA, Takahashi Y, Urushiyama A, Ohmori D, Yamakura F, Arisaka F, Imai T.

J Biosci Bioeng. 2012 Jul;114(1):23-7. doi: 10.1016/j.jbiosc.2012.02.014. Epub 2012 May 17.

PMID:
22608551
30.

Structure of a dominant-negative helix-loop-helix transcriptional regulator suggests mechanisms of autoinhibition.

Ishii R, Isogaya K, Seto A, Koinuma D, Watanabe Y, Arisaka F, Yaguchi S, Ikushima H, Dohmae N, Miyazono K, Miyazawa K, Ishitani R, Nureki O.

EMBO J. 2012 May 30;31(11):2541-52. doi: 10.1038/emboj.2012.77. Epub 2012 Mar 27.

31.

Archaeal ribosomal stalk protein interacts with translation factors in a nucleotide-independent manner via its conserved C terminus.

Nomura N, Honda T, Baba K, Naganuma T, Tanzawa T, Arisaka F, Noda M, Uchiyama S, Tanaka I, Yao M, Uchiumi T.

Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3748-53. doi: 10.1073/pnas.1112934109. Epub 2012 Feb 21.

32.

Accumulation of β-conglycinin in soybean cotyledon through the formation of disulfide bonds between α'- and α-subunits.

Wadahama H, Iwasaki K, Matsusaki M, Nishizawa K, Ishimoto M, Arisaka F, Takagi K, Urade R.

Plant Physiol. 2012 Mar;158(3):1395-405. doi: 10.1104/pp.111.189621. Epub 2012 Jan 4.

33.

Genomic and proteomic characterization of the large Myoviridae bacteriophage ϕTMA of the extreme thermophile Thermus thermophilus.

Tamakoshi M, Murakami A, Sugisawa M, Tsuneizumi K, Takeda S, Saheki T, Izumi T, Akiba T, Mitsuoka K, Toh H, Yamashita A, Arisaka F, Hattori M, Oshima T, Yamagishi A.

Bacteriophage. 2011 May;1(3):152-164. Epub 2011 May 1.

34.

Crystallographic analysis reveals octamerization of viroplasm matrix protein P9-1 of Rice black streaked dwarf virus.

Akita F, Higashiura A, Shimizu T, Pu Y, Suzuki M, Uehara-Ichiki T, Sasaya T, Kanamaru S, Arisaka F, Tsukihara T, Nakagawa A, Omura T.

J Virol. 2012 Jan;86(2):746-56. doi: 10.1128/JVI.00826-11. Epub 2011 Nov 9.

35.

Screw motion regulates multiple functions of T4 phage protein gene product 5 during cell puncturing.

Nishima W, Kanamaru S, Arisaka F, Kitao A.

J Am Chem Soc. 2011 Aug 31;133(34):13571-6. doi: 10.1021/ja204451g. Epub 2011 Aug 5.

PMID:
21793574
36.

Biochemical analysis and kinetic modeling of the thermal inactivation of MBP-fused heparinase I: implications for a comprehensive thermostabilization strategy.

Chen S, Ye F, Chen Y, Chen Y, Zhao H, Yatsunami R, Nakamura S, Arisaka F, Xing XH.

Biotechnol Bioeng. 2011 Aug;108(8):1841-51. doi: 10.1002/bit.23144. Epub 2011 Apr 7.

PMID:
21445884
37.

Dimer-tetramer association equilibria of human adult hemoglobin and its mutants as observed by analytical ultracentrifugation.

Arisaka F, Nagai Y, Nagai M.

Methods. 2011 May;54(1):175-80. doi: 10.1016/j.ymeth.2011.01.003. Epub 2011 Jan 20.

PMID:
21256216
38.

Dual modification of a triple-stranded β-helix nanotube with Ru and Re metal complexes to promote photocatalytic reduction of CO2.

Yokoi N, Miura Y, Huang CY, Takatani N, Inaba H, Koshiyama T, Kanamaru S, Arisaka F, Watanabe Y, Kitagawa S, Ueno T.

Chem Commun (Camb). 2011 Feb 21;47(7):2074-6. doi: 10.1039/c0cc03015e. Epub 2011 Jan 4.

PMID:
21206940
39.

Morphogenesis of the T4 tail and tail fibers.

Leiman PG, Arisaka F, van Raaij MJ, Kostyuchenko VA, Aksyuk AA, Kanamaru S, Rossmann MG.

Virol J. 2010 Dec 3;7:355. doi: 10.1186/1743-422X-7-355. Review.

40.

Biochemical and physiological characterization of a BLUF protein-EAL protein complex involved in blue light-dependent degradation of cyclic diguanylate in the purple bacterium Rhodopseudomonas palustris.

Kanazawa T, Ren S, Maekawa M, Hasegawa K, Arisaka F, Hyodo M, Hayakawa Y, Ohta H, Masuda S.

Biochemistry. 2010 Dec 21;49(50):10647-55. doi: 10.1021/bi101448t. Epub 2010 Nov 23.

PMID:
21082778
41.

Comparative biochemical characterization of two GroEL homologs from the cyanobacterium Synechococcus elongatus PCC 7942.

Huq S, Sueoka K, Narumi S, Arisaka F, Nakamoto H.

Biosci Biotechnol Biochem. 2010;74(11):2273-80. Epub 2010 Nov 7.

42.

The C-terminal coiled-coil of the bacterial voltage-gated sodium channel NaChBac is not essential for tetramer formation, but stabilizes subunit-to-subunit interactions.

Mio K, Mio M, Arisaka F, Sato M, Sato C.

Prog Biophys Mol Biol. 2010 Sep;103(1):111-21. doi: 10.1016/j.pbiomolbio.2010.05.002. Epub 2010 May 26.

PMID:
20678983
43.

Construction of robust bio-nanotubes using the controlled self-assembly of component proteins of bacteriophage T4.

Yokoi N, Inaba H, Terauchi M, Stieg AZ, Sanghamitra NJ, Koshiyama T, Yutani K, Kanamaru S, Arisaka F, Hikage T, Suzuki A, Yamane T, Gimzewski JK, Watanabe Y, Kitagawa S, Ueno T.

Small. 2010 Sep 6;6(17):1873-9. doi: 10.1002/smll.201000772. No abstract available.

PMID:
20661999
44.

Solution structure of the N-terminal domain of the archaeal D-family DNA polymerase small subunit reveals evolutionary relationship to eukaryotic B-family polymerases.

Yamasaki K, Urushibata Y, Yamasaki T, Arisaka F, Matsui I.

FEBS Lett. 2010 Aug 4;584(15):3370-5. doi: 10.1016/j.febslet.2010.06.026. Epub 2010 Jun 23.

45.

Sequential assembly of the wedge of the baseplate of phage T4 in the presence and absence of gp11 as monitored by analytical ultracentrifugation.

Yap ML, Mio K, Ali S, Minton A, Kanamaru S, Arisaka F.

Macromol Biosci. 2010 Jul 7;10(7):808-13. doi: 10.1002/mabi.201000042.

PMID:
20593364
46.

Redox and metal-regulated oligomeric state for human porphobilinogen synthase activation.

Sawada N, Nagahara N, Arisaka F, Mitsuoka K, Minami M.

Amino Acids. 2011 Jun;41(1):173-80. doi: 10.1007/s00726-010-0570-y. Epub 2010 Mar 31.

PMID:
20354739
47.

The baseplate wedges of bacteriophage T4 spontaneously assemble into hubless baseplate-like structure in vitro.

Yap ML, Mio K, Leiman PG, Kanamaru S, Arisaka F.

J Mol Biol. 2010 Jan 15;395(2):349-60. doi: 10.1016/j.jmb.2009.10.071. Epub 2009 Nov 5.

PMID:
19896486
48.

Structure analysis of short peptides by analytical ultracentrifugation: Review.

Arakawa T, Niikura T, Kita Y, Arisaka F.

Drug Discov Ther. 2009 Oct;3(5):208-14.

49.

Construction of an energy transfer system in the bio-nanocup space by heteromeric assembly of gp27 and gp5 proteins isolated from bacteriophage T4.

Koshiyama T, Ueno T, Kanamaru S, Arisaka F, Watanabe Y.

Org Biomol Chem. 2009 Jun 21;7(12):2649-54. doi: 10.1039/b904297k. Epub 2009 May 18.

PMID:
19503942
50.

Short neuroprotective peptides, ADNF9 and NAP, are structurally disordered and monomeric in PBS.

Arakawa T, Niikura T, Arisaka F, Kita Y.

Int J Biol Macromol. 2009 Jul 1;45(1):8-11. doi: 10.1016/j.ijbiomac.2009.03.007. Epub 2009 Apr 1.

PMID:
19447252

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