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Items: 1 to 50 of 216

1.

Morphological study of skin cancer lesions through a 3D scanner based on fringe projection and machine learning.

Rey-Barroso L, Burgos-Fernández FJ, Ares M, Royo S, Puig S, Malvehy J, Pellacani G, Espinar D, Sicilia N, Ricart MV.

Biomed Opt Express. 2019 Jun 18;10(7):3404-3409. doi: 10.1364/BOE.10.003404. eCollection 2019 Jul 1.

2.

Rapidly evolving protointrons in Saccharomyces genomes revealed by a hungry spliceosome.

Talkish J, Igel H, Perriman RJ, Shiue L, Katzman S, Munding EM, Shelansky R, Donohue JP, Ares M Jr.

PLoS Genet. 2019 Aug 22;15(8):e1008249. doi: 10.1371/journal.pgen.1008249. eCollection 2019 Aug.

3.

The Coli Surface Antigen CS3 of Enterotoxigenic Escherichia coli Is Differentially Regulated by H-NS, CRP, and CpxRA Global Regulators.

Ares MA, Abundes-Gallegos J, Rodríguez-Valverde D, Panunzi LG, Jiménez-Galicia C, Jarillo-Quijada MD, Cedillo ML, Alcántar-Curiel MD, Torres J, Girón JA, De la Cruz MA.

Front Microbiol. 2019 Jul 25;10:1685. doi: 10.3389/fmicb.2019.01685. eCollection 2019.

4.

The Interaction of Klebsiella pneumoniae With Lipid Rafts-Associated Cholesterol Increases Macrophage-Mediated Phagocytosis Due to Down Regulation of the Capsule Polysaccharide.

Ares MA, Sansabas A, Rodríguez-Valverde D, Siqueiros-Cendón T, Rascón-Cruz Q, Rosales-Reyes R, Jarillo-Quijada MD, Alcántar-Curiel MD, Cedillo ML, Torres J, Girón JA, De la Cruz MA.

Front Cell Infect Microbiol. 2019 Jul 17;9:255. doi: 10.3389/fcimb.2019.00255. eCollection 2019.

5.

Differential expression of coxsackievirus and adenovirus receptor in endomyocardial tissue of patients with myocarditis.

García-Becerril GE, Cruz-Montalvo AE, De La Cruz MA, Ares MA, Moreno-Ruiz LA, García-Chequer AJ, Maldonado-Bernal C, Gómez-Jiménez LM, Flores-García CA, Garrido-Garduño MH, Cárdenas-Mondragón MG.

Mol Med Rep. 2019 Sep;20(3):2189-2198. doi: 10.3892/mmr.2019.10444. Epub 2019 Jun 28.

6.

Cus2 enforces the first ATP-dependent step of splicing by binding to yeast SF3b1 through a UHM-ULM interaction.

Talkish J, Igel H, Hunter O, Horner SW, Jeffery NN, Leach JR, Jenkins JL, Kielkopf CL, Ares M.

RNA. 2019 Aug;25(8):1020-1037. doi: 10.1261/rna.070649.119. Epub 2019 May 20.

7.

Hypoxia Is Not a Main Stress When Mycobacterium tuberculosis Is in a Dormancy-Like Long-Chain Fatty Acid Environment.

Del Portillo P, García-Morales L, Menéndez MC, Anzola JM, Rodríguez JG, Helguera-Repetto AC, Ares MA, Prados-Rosales R, Gonzalez-Y-Merchand JA, García MJ.

Front Cell Infect Microbiol. 2019 Jan 9;8:449. doi: 10.3389/fcimb.2018.00449. eCollection 2018.

8.

The CpxRA stress response system regulates virulence features of avian pathogenic Escherichia coli.

Matter LB, Ares MA, Abundes-Gallegos J, Cedillo ML, Yáñez JA, Martínez-Laguna Y, De la Cruz MA, Girón JA.

Environ Microbiol. 2018 Sep;20(9):3363-3377. doi: 10.1111/1462-2920.14368. Epub 2018 Sep 24.

PMID:
30062827
9.

Visible and Extended Near-Infrared Multispectral Imaging for Skin Cancer Diagnosis.

Rey-Barroso L, Burgos-Fernández FJ, Delpueyo X, Ares M, Royo S, Malvehy J, Puig S, Vilaseca M.

Sensors (Basel). 2018 May 5;18(5). pii: E1441. doi: 10.3390/s18051441.

10.

Evidence for convergent evolution of SINE-directed Staufen-mediated mRNA decay.

Lucas BA, Lavi E, Shiue L, Cho H, Katzman S, Miyoshi K, Siomi MC, Carmel L, Ares M Jr, Maquat LE.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):968-973. doi: 10.1073/pnas.1715531115. Epub 2018 Jan 16.

11.

Autogenous cross-regulation of Quaking mRNA processing and translation balances Quaking functions in splicing and translation.

Fagg WS, Liu N, Fair JH, Shiue L, Katzman S, Donohue JP, Ares M Jr.

Genes Dev. 2017 Sep 15;31(18):1894-1909. doi: 10.1101/gad.302059.117. Epub 2017 Oct 11.

12.

Multispectral imaging system based on light-emitting diodes for the detection of melanomas and basal cell carcinomas: a pilot study (erratum).

Delpueyo X, Vilaseca M, Royo S, Ares M, Rey-Barroso L, Sanabria F, Puig S, Malvehy J, Pellacani G, Noguero F, Solomita G, Bosch T.

J Biomed Opt. 2017 Jul 1;22(7):79801. doi: 10.1117/1.JBO.22.7.079801.

13.

The sigma factor SigD of Mycobacterium tuberculosis putatively enhances gene expression of the septum site determining protein under stressful environments.

Ares MA, Rios-Sarabia N, De la Cruz MA, Rivera-Gutiérrez S, García-Morales L, León-Solís L, Espitia C, Pacheco S, Cerna-Cortés JF, Helguera-Repetto CA, García MJ, González-Y-Merchand JA.

New Microbiol. 2017 Jul;40(3):199-204. Epub 2017 Jul 4.

14.

Multispectral imaging system based on light-emitting diodes for the detection of melanomas and basal cell carcinomas: a pilot study.

Delpueyo X, Vilaseca M, Royo S, Ares M, Rey-Barroso L, Sanabria F, Puig S, Pellacani G, Noguero F, Solomita G, Bosch T.

J Biomed Opt. 2017 Jun 1;22(6):65006. doi: 10.1117/1.JBO.22.6.065006.

15.

Gene Expression Profiling of Transcription Factors of Helicobacter pylori under Different Environmental Conditions.

De la Cruz MA, Ares MA, von Bargen K, Panunzi LG, Martínez-Cruz J, Valdez-Salazar HA, Jiménez-Galicia C, Torres J.

Front Microbiol. 2017 Apr 10;8:615. doi: 10.3389/fmicb.2017.00615. eCollection 2017.

16.

Additional regulatory activities of MrkH for the transcriptional expression of the Klebsiella pneumoniae mrk genes: Antagonist of H-NS and repressor.

Ares MA, Fernández-Vázquez JL, Pacheco S, Martínez-Santos VI, Jarillo-Quijada MD, Torres J, Alcántar-Curiel MD, González-Y-Merchand JA, De la Cruz MA.

PLoS One. 2017 Mar 9;12(3):e0173285. doi: 10.1371/journal.pone.0173285. eCollection 2017.

17.

The expression of Longus type 4 pilus of enterotoxigenic Escherichia coli is regulated by LngR and LngS and by H-NS, CpxR and CRP global regulators.

De la Cruz MA, Ruiz-Tagle A, Ares MA, Pacheco S, Yáñez JA, Cedillo L, Torres J, Girón JA.

Environ Microbiol. 2017 May;19(5):1761-1775. doi: 10.1111/1462-2920.13644. Epub 2017 Feb 6.

PMID:
27943535
18.

Transcriptional Profiling of Type II Toxin-Antitoxin Genes of Helicobacter pylori under Different Environmental Conditions: Identification of HP0967-HP0968 System.

Cárdenas-Mondragón MG, Ares MA, Panunzi LG, Pacheco S, Camorlinga-Ponce M, Girón JA, Torres J, De la Cruz MA.

Front Microbiol. 2016 Nov 22;7:1872. eCollection 2016.

19.

RNA-binding protein CPEB1 remodels host and viral RNA landscapes.

Batra R, Stark TJ, Clark E, Belzile JP, Wheeler EC, Yee BA, Huang H, Gelboin-Burkhart C, Huelga SC, Aigner S, Roberts BT, Bos TJ, Sathe S, Donohue JP, Rigo F, Ares M Jr, Spector DH, Yeo GW.

Nat Struct Mol Biol. 2016 Dec;23(12):1101-1110. doi: 10.1038/nsmb.3310. Epub 2016 Oct 24.

20.

Protein-RNA Networks Regulated by Normal and ALS-Associated Mutant HNRNPA2B1 in the Nervous System.

Martinez FJ, Pratt GA, Van Nostrand EL, Batra R, Huelga SC, Kapeli K, Freese P, Chun SJ, Ling K, Gelboin-Burkhart C, Fijany L, Wang HC, Nussbacher JK, Broski SM, Kim HJ, Lardelli R, Sundararaman B, Donohue JP, Javaherian A, Lykke-Andersen J, Finkbeiner S, Bennett CF, Ares M Jr, Burge CB, Taylor JP, Rigo F, Yeo GW.

Neuron. 2016 Nov 23;92(4):780-795. doi: 10.1016/j.neuron.2016.09.050. Epub 2016 Oct 20.

21.

Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses.

Kapeli K, Pratt GA, Vu AQ, Hutt KR, Martinez FJ, Sundararaman B, Batra R, Freese P, Lambert NJ, Huelga SC, Chun SJ, Liang TY, Chang J, Donohue JP, Shiue L, Zhang J, Zhu H, Cambi F, Kasarskis E, Hoon S, Ares M Jr, Burge CB, Ravits J, Rigo F, Yeo GW.

Nat Commun. 2016 Jul 5;7:12143. doi: 10.1038/ncomms12143.

22.

The Validity of the Pediatric Assessment Triangle as the First Step in the Triage Process in a Pediatric Emergency Department.

Fernández A, Ares MI, Garcia S, Martinez-Indart L, Mintegi S, Benito J.

Pediatr Emerg Care. 2017 Apr;33(4):234-238. doi: 10.1097/PEC.0000000000000717.

PMID:
27176906
23.

SMITten by the Speed of Splicing.

Johnson TL, Ares M Jr.

Cell. 2016 Apr 7;165(2):265-7. doi: 10.1016/j.cell.2016.03.035.

24.

Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression.

de Bruin RG, Shiue L, Prins J, de Boer HC, Singh A, Fagg WS, van Gils JM, Duijs JM, Katzman S, Kraaijeveld AO, Böhringer S, Leung WY, Kielbasa SM, Donahue JP, van der Zande PH, Sijbom R, van Alem CM, Bot I, van Kooten C, Jukema JW, Van Esch H, Rabelink TJ, Kazan H, Biessen EA, Ares M Jr, van Zonneveld AJ, van der Veer EP.

Nat Commun. 2016 Mar 31;7:10846. doi: 10.1038/ncomms10846.

25.

H-NS Nucleoid Protein Controls Virulence Features of Klebsiella pneumoniae by Regulating the Expression of Type 3 Pili and the Capsule Polysaccharide.

Ares MA, Fernández-Vázquez JL, Rosales-Reyes R, Jarillo-Quijada MD, von Bargen K, Torres J, González-y-Merchand JA, Alcántar-Curiel MD, De la Cruz MA.

Front Cell Infect Microbiol. 2016 Feb 9;6:13. doi: 10.3389/fcimb.2016.00013. eCollection 2016.

26.

The Two-Component System CpxRA Negatively Regulates the Locus of Enterocyte Effacement of Enterohemorrhagic Escherichia coli Involving σ(32) and Lon protease.

De la Cruz MA, Morgan JK, Ares MA, Yáñez-Santos JA, Riordan JT, Girón JA.

Front Cell Infect Microbiol. 2016 Feb 5;6:11. doi: 10.3389/fcimb.2016.00011. eCollection 2016.

27.

A general method for the quantitative assessment of mineral pigments.

Ares MC, Fernández JM.

Talanta. 2016 Jan 1;146:303-9. doi: 10.1016/j.talanta.2015.08.061. Epub 2015 Aug 29.

PMID:
26695268
28.

Analysis of Splicing Complexes on Native Gels.

Ares M Jr.

Cold Spring Harb Protoc. 2015 Aug 3;2015(8):787. doi: 10.1101/pdb.err089896. No abstract available.

PMID:
26240400
29.

Analysis of Splicing In Vitro Using Extracts of Saccharomyces cerevisiae.

Ares M Jr.

Cold Spring Harb Protoc. 2015 Aug 3;2015(8):786. doi: 10.1101/pdb.err089888. No abstract available.

PMID:
26240399
30.

Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and Antarctic Micromonas Populations.

Simmons MP, Bachy C, Sudek S, van Baren MJ, Sudek L, Ares M Jr, Worden AZ.

Mol Biol Evol. 2015 Sep;32(9):2219-35. doi: 10.1093/molbev/msv122. Epub 2015 May 20.

31.

Coffee with Ribohipster.

Ares M Jr.

RNA. 2015 Apr;21(4):494-6. doi: 10.1261/rna.050468.115. No abstract available.

32.

Methods for processing high-throughput RNA sequencing data.

Ares M Jr.

Cold Spring Harb Protoc. 2014 Nov 3;2014(11):1139-48. doi: 10.1101/pdb.top083352.

PMID:
25368318
33.

Basic quantitative polymerase chain reaction using real-time fluorescence measurements.

Ares M Jr.

Cold Spring Harb Protoc. 2014 Oct 1;2014(10):pdb.prot080903. doi: 10.1101/pdb.prot080903.

PMID:
25275107
34.

Context-dependent control of alternative splicing by RNA-binding proteins.

Fu XD, Ares M Jr.

Nat Rev Genet. 2014 Oct;15(10):689-701. doi: 10.1038/nrg3778. Epub 2014 Aug 12. Review.

35.

RBPmap: a web server for mapping binding sites of RNA-binding proteins.

Paz I, Kosti I, Ares M Jr, Cline M, Mandel-Gutfreund Y.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W361-7. doi: 10.1093/nar/gku406. Epub 2014 May 14.

36.

Antibiotic resistance of gram-negative bacilli isolated from pediatric patients with nosocomial bloodstream infections in a Mexican tertiary care hospital.

Ares MÁ, Alcántar-Curiel MD, Jiménez-Galicia C, Rios-Sarabia N, Pacheco S, De la Cruz MÁ.

Chemotherapy. 2013;59(5):361-8. doi: 10.1159/000362085. Epub 2014 May 10.

PMID:
24821320
37.

Methods for processing microarray data.

Ares M Jr.

Cold Spring Harb Protoc. 2014 Feb 1;2014(2):225-9. doi: 10.1101/pdb.prot080507.

PMID:
24492782
38.

Tips on hybridizing, washing, and scanning affymetrix microarrays.

Ares M Jr.

Cold Spring Harb Protoc. 2014 Feb 1;2014(2):219-24. doi: 10.1101/pdb.prot080499.

PMID:
24492781
39.

Scanning microarray slides.

Ares M Jr.

Cold Spring Harb Protoc. 2014 Feb 1;2014(2):214-8. doi: 10.1101/pdb.prot080481.

PMID:
24492780
40.

OmpR phosphorylation regulates ompS1 expression by differentially controlling the use of promoters.

Flores-Valdez MA, Fernández-Mora M, Ares MÁ, Girón JA, Calva E, De la Cruz MÁ.

Microbiology. 2014 Apr;160(Pt 4):733-41. doi: 10.1099/mic.0.071381-0. Epub 2014 Jan 17.

PMID:
24440835
41.

Microarray slide hybridization using fluorescently labeled cDNA.

Ares M Jr.

Cold Spring Harb Protoc. 2014 Jan 1;2014(1):124-9. doi: 10.1101/pdb.prot080135.

PMID:
24371320
42.

Preparation of fluorescent-dye-labeled cDNA from RNA for microarray hybridization.

Ares M Jr.

Cold Spring Harb Protoc. 2014 Jan 1;2014(1):119-23. doi: 10.1101/pdb.prot080127.

PMID:
24371319
43.

High-yield synthesis of RNA using T7 RNA polymerase and plasmid DNA or oligonucleotide templates.

Nilsen TW, Rio DC, Ares M Jr.

Cold Spring Harb Protoc. 2013 Nov 1;2013(11). pii: pdb.prot078535. doi: 10.1101/pdb.prot078535.

PMID:
24184762
44.

Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7).

Turner R, Shefer K, Ares M Jr.

RNA. 2013 Dec;19(12):1857-63. doi: 10.1261/rna.042374.113. Epub 2013 Oct 18.

45.

Analysis of splicing complexes on native gels.

Ares M Jr.

Cold Spring Harb Protoc. 2013 Oct 1;2013(10):986-9. doi: 10.1101/pdb.prot078139. Erratum in: Cold Spring Harb Protoc. 2015 Aug;2015(8):787.

PMID:
24086054
46.

Analysis of splicing in vitro using extracts of Saccharomyces cerevisiae.

Ares M Jr.

Cold Spring Harb Protoc. 2013 Oct 1;2013(10):982-5. doi: 10.1101/pdb.prot078121. Erratum in: Cold Spring Harb Protoc. 2015 Aug;2015(8):786.

PMID:
24086053
47.

Preparation of cell-free splicing extracts from Saccharomyces cerevisiae.

Ares M Jr.

Cold Spring Harb Protoc. 2013 Oct 1;2013(10):978-81. doi: 10.1101/pdb.prot078113.

PMID:
24086052
48.

Competition between pre-mRNAs for the splicing machinery drives global regulation of splicing.

Munding EM, Shiue L, Katzman S, Donohue JP, Ares M Jr.

Mol Cell. 2013 Aug 8;51(3):338-48. doi: 10.1016/j.molcel.2013.06.012. Epub 2013 Jul 25.

49.

A high-throughput splicing assay identifies new classes of inhibitors of human and yeast spliceosomes.

Effenberger KA, Perriman RJ, Bray WM, Lokey RS, Ares M Jr, Jurica MS.

J Biomol Screen. 2013 Oct;18(9):1110-20. doi: 10.1177/1087057113493117. Epub 2013 Jun 14.

50.

Fragmentation of whole-transcriptome RNA using E. coli RNase III.

Ares M Jr.

Cold Spring Harb Protoc. 2013 May 1;2013(5):479-81. doi: 10.1101/pdb.prot074369.

PMID:
23637372

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