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Items: 1 to 50 of 67

1.

The three dimensional structure of Bovine Salivary Protein 30b (BSP30b) and its interaction with specific rumen bacteria.

Zhang H, Burrows J, Card GL, Attwood G, Wheeler TT, Arcus VL.

PLoS One. 2019 Apr 12;14(4):e0206709. doi: 10.1371/journal.pone.0206709. eCollection 2019.

2.

Evaluation of the rapid molecular diagnostic test for the New Zealand Mycobacterium tuberculosis Rangipo strain in a clinical setting.

Mulholland CV, Thorpe D, Cursons RT, Karalus N, Fong Y, Arcus VL, Cook GM, Aung HL.

N Z Med J. 2018 Jul 13;131(1478):70-72. No abstract available.

PMID:
30001311
3.

Dynamical origins of heat capacity changes in enzyme-catalysed reactions.

van der Kamp MW, Prentice EJ, Kraakman KL, Connolly M, Mulholland AJ, Arcus VL.

Nat Commun. 2018 Mar 21;9(1):1177. doi: 10.1038/s41467-018-03597-y.

4.

Crystal structure of an inferred ancestral bacterial pyruvate decarboxylase.

Buddrus L, Andrews ESV, Leak DJ, Danson MJ, Arcus VL, Crennell SJ.

Acta Crystallogr F Struct Biol Commun. 2018 Mar 1;74(Pt 3):179-186. doi: 10.1107/S2053230X18002819. Epub 2018 Feb 26.

5.

Enzyme evolution: innovation is easy, optimization is complicated.

Newton MS, Arcus VL, Gerth ML, Patrick WM.

Curr Opin Struct Biol. 2018 Feb;48:110-116. doi: 10.1016/j.sbi.2017.11.007. Epub 2017 Dec 5. Review.

6.

Macromolecular rate theory (MMRT) provides a thermodynamics rationale to underpin the convergent temperature response in plant leaf respiration.

Liang LL, Arcus VL, Heskel MA, O'Sullivan OS, Weerasinghe LK, Creek D, Egerton JJG, Tjoelker MG, Atkin OK, Schipper LA.

Glob Chang Biol. 2018 Apr;24(4):1538-1547. doi: 10.1111/gcb.13936. Epub 2017 Nov 14.

PMID:
29030907
7.

A complete thermodynamic analysis of enzyme turnover links the free energy landscape to enzyme catalysis.

Jones HBL, Wells SA, Prentice EJ, Kwok A, Liang LL, Arcus VL, Pudney CR.

FEBS J. 2017 Sep;284(17):2829-2842. doi: 10.1111/febs.14152. Epub 2017 Jul 25.

8.

Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism.

Summers EL, Cumming MH, Oulavallickal T, Roberts NJ, Arcus VL.

Protein Sci. 2017 Aug;26(8):1627-1638. doi: 10.1002/pro.3199. Epub 2017 Jun 6.

9.

Rapid molecular diagnosis of the Mycobacterium tuberculosis Rangipo strain responsible for the largest recurring TB cluster in New Zealand.

Mulholland CV, Ruthe A, Cursons RT, Durrant R, Karalus N, Coley K, Bower J, Permina E, Coleman MJ, Roberts SA, Arcus VL, Cook GM, Aung HL.

Diagn Microbiol Infect Dis. 2017 Jun;88(2):138-140. doi: 10.1016/j.diagmicrobio.2017.03.012. Epub 2017 Mar 23.

PMID:
28389146
10.

Change in Heat Capacity for Enzyme Catalysis Determines Temperature Dependence of Enzyme Catalyzed Rates.

Hobbs JK, Jiao W, Easter AD, Parker EJ, Schipper LA, Arcus VL.

ACS Chem Biol. 2017 Mar 17;12(3):868. doi: 10.1021/acschembio.7b00065. Epub 2017 Feb 21. No abstract available.

PMID:
28221017
11.

Heat Capacity Changes for Transition-State Analogue Binding and Catalysis with Human 5'-Methylthioadenosine Phosphorylase.

Firestone RS, Cameron SA, Karp JM, Arcus VL, Schramm VL.

ACS Chem Biol. 2017 Feb 17;12(2):464-473. doi: 10.1021/acschembio.6b00885. Epub 2016 Dec 27.

12.

The structure of a glycoside hydrolase 29 family member from a rumen bacterium reveals unique, dual carbohydrate-binding domains.

Summers EL, Moon CD, Atua R, Arcus VL.

Acta Crystallogr F Struct Biol Commun. 2016 Oct 1;72(Pt 10):750-761. Epub 2016 Sep 22.

13.

Structure and Function of AmtR in Mycobacterium smegmatis: Implications for Post-Transcriptional Regulation of Urea Metabolism through a Small Antisense RNA.

Petridis M, Vickers C, Robson J, McKenzie JL, Bereza M, Sharrock A, Aung HL, Arcus VL, Cook GM.

J Mol Biol. 2016 Oct 23;428(21):4315-4329. doi: 10.1016/j.jmb.2016.09.009. Epub 2016 Sep 15.

PMID:
27640309
14.

Crystal structure of pyruvate decarboxylase from Zymobacter palmae.

Buddrus L, Andrews ES, Leak DJ, Danson MJ, Arcus VL, Crennell SJ.

Acta Crystallogr F Struct Biol Commun. 2016 Sep;72(Pt 9):700-6. doi: 10.1107/S2053230X16012012. Epub 2016 Aug 26.

15.

Interdomain Conformational Changes Provide Allosteric Regulation en Route to Chorismate.

Nazmi AR, Lang EJM, Bai Y, Allison TM, Othman MH, Panjikar S, Arcus VL, Parker EJ.

J Biol Chem. 2016 Oct 14;291(42):21836-21847. doi: 10.1074/jbc.M116.741637. Epub 2016 Aug 8.

16.

On the Temperature Dependence of Enzyme-Catalyzed Rates.

Arcus VL, Prentice EJ, Hobbs JK, Mulholland AJ, Van der Kamp MW, Pudney CR, Parker EJ, Schipper LA.

Biochemistry. 2016 Mar 29;55(12):1681-8. doi: 10.1021/acs.biochem.5b01094. Epub 2016 Mar 8.

PMID:
26881922
17.

Biotechnological Uses of Archaeal Proteins.

Pecorari F, Arcus VL, Wiegel J.

Archaea. 2015 Oct 12;2015:809758. doi: 10.1155/2015/809758. eCollection 2015. No abstract available.

18.

Prediction of the substrate for nonribosomal peptide synthetase (NRPS) adenylation domains by virtual screening.

Lee TV, Johnson RD, Arcus VL, Lott JS.

Proteins. 2015 Nov;83(11):2052-66. doi: 10.1002/prot.24922. Epub 2015 Sep 28.

PMID:
26358936
19.

Reconstructed Ancestral Enzymes Impose a Fitness Cost upon Modern Bacteria Despite Exhibiting Favourable Biochemical Properties.

Hobbs JK, Prentice EJ, Groussin M, Arcus VL.

J Mol Evol. 2015 Oct;81(3-4):110-20. doi: 10.1007/s00239-015-9697-5. Epub 2015 Sep 9.

PMID:
26349578
20.

Change in heat capacity accurately predicts vibrational coupling in enzyme catalyzed reactions.

Arcus VL, Pudney CR.

FEBS Lett. 2015 Aug 4;589(17):2200-6. doi: 10.1016/j.febslet.2015.06.042. Epub 2015 Jul 11.

21.

The mycobacterial PhoH2 proteins are type II toxin antitoxins coupled to RNA helicase domains.

Andrews ES, Arcus VL.

Tuberculosis (Edinb). 2015 Jul;95(4):385-94. doi: 10.1016/j.tube.2015.03.013. Epub 2015 Apr 16.

PMID:
25999286
22.

Rapid bursts and slow declines: on the possible evolutionary trajectories of enzymes.

Newton MS, Arcus VL, Patrick WM.

J R Soc Interface. 2015 Jun 6;12(107). pii: 20150036. doi: 10.1098/rsif.2015.0036. Review.

23.

Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees.

Groussin M, Hobbs JK, Szöllősi GJ, Gribaldo S, Arcus VL, Gouy M.

Mol Biol Evol. 2015 Jan;32(1):13-22. doi: 10.1093/molbev/msu305. Epub 2014 Nov 4.

24.

Structural analysis of the GH43 enzyme Xsa43E from Butyrivibrio proteoclasticus.

Till M, Goldstone D, Card G, Attwood GT, Moon CD, Arcus VL.

Acta Crystallogr F Struct Biol Commun. 2014 Sep;70(Pt 9):1193-8. doi: 10.1107/S2053230X14014745. Epub 2014 Aug 29.

25.

Thermodynamic theory explains the temperature optima of soil microbial processes and high Q10 values at low temperatures.

Schipper LA, Hobbs JK, Rutledge S, Arcus VL.

Glob Chang Biol. 2014 Nov;20(11):3578-86. doi: 10.1111/gcb.12596. Epub 2014 May 26.

26.

Whole genome sequencing of Mycobacterium tuberculosis reveals slow growth and low mutation rates during latent infections in humans.

Colangeli R, Arcus VL, Cursons RT, Ruthe A, Karalus N, Coley K, Manning SD, Kim S, Marchiano E, Alland D.

PLoS One. 2014 Mar 11;9(3):e91024. doi: 10.1371/journal.pone.0091024. eCollection 2014.

27.

Tracking molecular recognition at the atomic level with a new protein scaffold based on the OB-fold.

Steemson JD, Baake M, Rakonjac J, Arcus VL, Liddament MT.

PLoS One. 2014 Jan 20;9(1):e86050. doi: 10.1371/journal.pone.0086050. eCollection 2014.

28.

Mycobacterium tuberculosis Rv2179c protein establishes a new exoribonuclease family with broad phylogenetic distribution.

Abendroth J, Ollodart A, Andrews ES, Myler PJ, Staker BL, Edwards TE, Arcus VL, Grundner C.

J Biol Chem. 2014 Jan 24;289(4):2139-47. doi: 10.1074/jbc.M113.525683. Epub 2013 Dec 4.

29.

Change in heat capacity for enzyme catalysis determines temperature dependence of enzyme catalyzed rates.

Hobbs JK, Jiao W, Easter AD, Parker EJ, Schipper LA, Arcus VL.

ACS Chem Biol. 2013 Nov 15;8(11):2388-93. doi: 10.1021/cb4005029. Epub 2013 Sep 17. Erratum in: ACS Chem Biol. 2017 Mar 17;12 (3):868.

PMID:
24015933
30.

Ribonucleases in bacterial toxin-antitoxin systems.

Cook GM, Robson JR, Frampton RA, McKenzie J, Przybilski R, Fineran PC, Arcus VL.

Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):523-31. doi: 10.1016/j.bbagrm.2013.02.007. Epub 2013 Feb 21. Review.

PMID:
23454553
31.

Structure and function of an acetyl xylan esterase (Est2A) from the rumen bacterium Butyrivibrio proteoclasticus.

Till M, Goldstone DC, Attwood GT, Moon CD, Kelly WJ, Arcus VL.

Proteins. 2013 May;81(5):911-7. doi: 10.1002/prot.24254. Epub 2013 Feb 25.

PMID:
23345031
32.

The structure of the oligomerization domain of Lsr2 from Mycobacterium tuberculosis reveals a mechanism for chromosome organization and protection.

Summers EL, Meindl K, Usón I, Mitra AK, Radjainia M, Colangeli R, Alland D, Arcus VL.

PLoS One. 2012;7(6):e38542. doi: 10.1371/journal.pone.0038542. Epub 2012 Jun 13.

33.

Determination of ribonuclease sequence-specificity using Pentaprobes and mass spectrometry.

McKenzie JL, Duyvestyn JM, Smith T, Bendak K, Mackay J, Cursons R, Cook GM, Arcus VL.

RNA. 2012 Jun;18(6):1267-78. doi: 10.1261/rna.031229.111. Epub 2012 Apr 26.

34.

A VapBC toxin-antitoxin module is a posttranscriptional regulator of metabolic flux in mycobacteria.

McKenzie JL, Robson J, Berney M, Smith TC, Ruthe A, Gardner PP, Arcus VL, Cook GM.

J Bacteriol. 2012 May;194(9):2189-204. doi: 10.1128/JB.06790-11. Epub 2012 Feb 24.

35.

Toxin-antitoxin systems of Mycobacterium smegmatis are essential for cell survival.

Frampton R, Aggio RB, Villas-Bôas SG, Arcus VL, Cook GM.

J Biol Chem. 2012 Feb 17;287(8):5340-56. doi: 10.1074/jbc.M111.286856. Epub 2011 Dec 23.

36.

On the origin and evolution of thermophily: reconstruction of functional precambrian enzymes from ancestors of Bacillus.

Hobbs JK, Shepherd C, Saul DJ, Demetras NJ, Haaning S, Monk CR, Daniel RM, Arcus VL.

Mol Biol Evol. 2012 Feb;29(2):825-35. doi: 10.1093/molbev/msr253. Epub 2011 Oct 13.

PMID:
21998276
37.

Expression, purification and characterisation of GIGANTEA: a circadian clock-controlled regulator of photoperiodic flowering in plants.

Black MM, Stockum C, Dickson JM, Putterill J, Arcus VL.

Protein Expr Purif. 2011 Apr;76(2):197-204. doi: 10.1016/j.pep.2010.11.009. Epub 2010 Nov 24.

PMID:
21111047
38.

The PIN-domain ribonucleases and the prokaryotic VapBC toxin-antitoxin array.

Arcus VL, McKenzie JL, Robson J, Cook GM.

Protein Eng Des Sel. 2011 Jan;24(1-2):33-40. doi: 10.1093/protein/gzq081. Epub 2010 Oct 29. Review.

PMID:
21036780
39.

Expression and purification of an adenylation domain from a eukaryotic nonribosomal peptide synthetase: using structural genomics tools for a challenging target.

Lee TV, Lott JS, Johnson RD, Arcus VL.

Protein Expr Purif. 2010 Dec;74(2):162-8. doi: 10.1016/j.pep.2010.08.004. Epub 2010 Aug 15.

PMID:
20716446
40.

Structural and functional characterization of a promiscuous feruloyl esterase (Est1E) from the rumen bacterium Butyrivibrio proteoclasticus.

Goldstone DC, Villas-Bôas SG, Till M, Kelly WJ, Attwood GT, Arcus VL.

Proteins. 2010 May 1;78(6):1457-69. doi: 10.1002/prot.22662.

PMID:
20058325
41.

Structure of a eukaryotic nonribosomal peptide synthetase adenylation domain that activates a large hydroxamate amino acid in siderophore biosynthesis.

Lee TV, Johnson LJ, Johnson RD, Koulman A, Lane GA, Lott JS, Arcus VL.

J Biol Chem. 2010 Jan 22;285(4):2415-27. doi: 10.1074/jbc.M109.071324. Epub 2009 Nov 18.

42.

The vapBC operon from Mycobacterium smegmatis is an autoregulated toxin-antitoxin module that controls growth via inhibition of translation.

Robson J, McKenzie JL, Cursons R, Cook GM, Arcus VL.

J Mol Biol. 2009 Jul 17;390(3):353-67. doi: 10.1016/j.jmb.2009.05.006. Epub 2009 May 13.

PMID:
19445953
43.

The multifunctional histone-like protein Lsr2 protects mycobacteria against reactive oxygen intermediates.

Colangeli R, Haq A, Arcus VL, Summers E, Magliozzo RS, McBride A, Mitra AK, Radjainia M, Khajo A, Jacobs WR Jr, Salgame P, Alland D.

Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4414-8. doi: 10.1073/pnas.0810126106. Epub 2009 Feb 23.

44.

Crystal structure of PAE0151 from Pyrobaculum aerophilum, a PIN-domain (VapC) protein from a toxin-antitoxin operon.

Bunker RD, McKenzie JL, Baker EN, Arcus VL.

Proteins. 2008 Jul;72(1):510-8. doi: 10.1002/prot.22048. No abstract available.

PMID:
18398909
46.

The potential impact of structural genomics on tuberculosis drug discovery.

Arcus VL, Lott JS, Johnston JM, Baker EN.

Drug Discov Today. 2006 Jan;11(1-2):28-34. Review.

PMID:
16478688
47.

A flexible and economical medium-throughput strategy for protein production and crystallization.

Moreland N, Ashton R, Baker HM, Ivanovic I, Patterson S, Arcus VL, Baker EN, Lott JS.

Acta Crystallogr D Biol Crystallogr. 2005 Oct;61(Pt 10):1378-85. Epub 2005 Sep 28.

PMID:
16204890
48.

Structure of naphthoate synthase (MenB) from Mycobacterium tuberculosis in both native and product-bound forms.

Johnston JM, Arcus VL, Baker EN.

Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1199-206. Epub 2005 Aug 16.

PMID:
16131752
49.

The PIN-domain toxin-antitoxin array in mycobacteria.

Arcus VL, Rainey PB, Turner SJ.

Trends Microbiol. 2005 Aug;13(8):360-5. Review.

PMID:
15993073
50.

Crystallographic and mutational data show that the streptococcal pyrogenic exotoxin J can use a common binding surface for T-cell receptor binding and dimerization.

Baker HM, Proft T, Webb PD, Arcus VL, Fraser JD, Baker EN.

J Biol Chem. 2004 Sep 10;279(37):38571-6. Epub 2004 Jul 7.

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