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Tumor suppressor SMARCB1 suppresses super-enhancers to govern hESC lineage determination.

Langer LF, Ward JM, Archer TK.

Elife. 2019 Apr 29;8. pii: e45672. doi: 10.7554/eLife.45672.


Epigenetic Enzymes, Age, and Ancestry Regulate the Efficiency of Human iPSC Reprogramming.

Mackey LC, Annab LA, Yang J, Rao B, Kissling GE, Schurman SH, Dixon D, Archer TK.

Stem Cells. 2018 Nov;36(11):1697-1708. doi: 10.1002/stem.2899. Epub 2018 Oct 17.


BRG1 governs glucocorticoid receptor interactions with chromatin and pioneer factors across the genome.

Hoffman JA, Trotter KW, Ward JM, Archer TK.

Elife. 2018 May 24;7. pii: e35073. doi: 10.7554/eLife.35073.


A role for BRG1 in the regulation of genes required for development of the lymphatic system.

Singh AP, Foley J, Tandon A, Phadke D, Karimi Kinyamu H, Archer TK.

Oncotarget. 2017 Jul 4;8(33):54925-54938. doi: 10.18632/oncotarget.18976. eCollection 2017 Aug 15.


Erratum for Trotter et al., "Glucocorticoid Receptor Transcriptional Activation via the BRG1-Dependent Recruitment of TOP2β and Ku70/86".

Trotter KW, King HA, Archer TK.

Mol Cell Biol. 2017 Aug 28;37(18). pii: e00348-17. doi: 10.1128/MCB.00348-17. Print 2017 Sep 15. No abstract available.


Epigenetic regulation of transcription factor promoter regions by low-dose genistein through mitogen-activated protein kinase and mitogen-and-stress activated kinase 1 nongenomic signaling.

Yu L, Ham K, Gao X, Castro L, Yan Y, Kissling GE, Tucker CJ, Flagler N, Dong R, Archer TK, Dixon D.

Cell Commun Signal. 2016 Aug 31;14(1):18. doi: 10.1186/s12964-016-0141-2.


Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters.

Lavender CA, Cannady KR, Hoffman JA, Trotter KW, Gilchrist DA, Bennett BD, Burkholder AB, Burd CJ, Fargo DC, Archer TK.

PLoS Genet. 2016 Aug 3;12(8):e1006224. doi: 10.1371/journal.pgen.1006224. eCollection 2016 Aug.


Brg1 Enables Rapid Growth of the Early Embryo by Suppressing Genes That Regulate Apoptosis and Cell Growth Arrest.

Singh AP, Foley JF, Rubino M, Boyle MC, Tandon A, Shah R, Archer TK.

Mol Cell Biol. 2016 Jul 14;36(15):1990-2010. doi: 10.1128/MCB.01101-15. Print 2016 Aug 1.


GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler.

Takaku M, Grimm SA, Shimbo T, Perera L, Menafra R, Stunnenberg HG, Archer TK, Machida S, Kurumizaka H, Wade PA.

Genome Biol. 2016 Feb 27;17:36. doi: 10.1186/s13059-016-0897-0.


LIN28A Modulates Splicing and Gene Expression Programs in Breast Cancer Cells.

Yang J, Bennett BD, Luo S, Inoue K, Grimm SA, Schroth GP, Bushel PR, Kinyamu HK, Archer TK.

Mol Cell Biol. 2015 Sep;35(18):3225-43. doi: 10.1128/MCB.00426-15. Epub 2015 Jul 6.


MiRNA-Mediated Regulation of the SWI/SNF Chromatin Remodeling Complex Controls Pluripotency and Endodermal Differentiation in Human ESCs.

Wade SL, Langer LF, Ward JM, Archer TK.

Stem Cells. 2015 Oct;33(10):2925-35. doi: 10.1002/stem.2084. Epub 2015 Jul 14.


Glucocorticoid Receptor Transcriptional Activation via the BRG1-Dependent Recruitment of TOP2β and Ku70/86.

Trotter KW, King HA, Archer TK.

Mol Cell Biol. 2015 Aug;35(16):2799-817. doi: 10.1128/MCB.00230-15. Epub 2015 Jun 8. Erratum in: Mol Cell Biol. 2017 Aug 28;37(18):.


Sustained reprogramming of the estrogen response after chronic exposure to endocrine disruptors.

Patterson AR, Mo X, Shapiro A, Wernke KE, Archer TK, Burd CJ.

Mol Endocrinol. 2015 Mar;29(3):384-95. doi: 10.1210/me.2014-1237. Epub 2015 Jan 16.


Transcriptional repression by the BRG1-SWI/SNF complex affects the pluripotency of human embryonic stem cells.

Zhang X, Li B, Li W, Ma L, Zheng D, Li L, Yang W, Chu M, Chen W, Mailman RB, Zhu J, Fan G, Archer TK, Wang Y.

Stem Cell Reports. 2014 Sep 9;3(3):460-74. doi: 10.1016/j.stemcr.2014.07.004. Epub 2014 Aug 14.


GCNF-dependent activation of cyclin D1 expression via repression of Mir302a during ESC differentiation.

Wang H, Wang X, Archer TK, Zwaka TP, Cooney AJ.

Stem Cells. 2014 Jun;32(6):1527-37. doi: 10.1002/stem.1689.


Persistently altered epigenetic marks in the mouse uterus after neonatal estrogen exposure.

Jefferson WN, Chevalier DM, Phelps JY, Cantor AM, Padilla-Banks E, Newbold RR, Archer TK, Kinyamu HK, Williams CJ.

Mol Endocrinol. 2013 Oct;27(10):1666-77. doi: 10.1210/me.2013-1211. Epub 2013 Sep 3.


SOX8 regulates permeability of the blood-testes barrier that affects adult male fertility in the mouse.

Singh AP, Cummings CA, Mishina Y, Archer TK.

Biol Reprod. 2013 May 31;88(5):133. doi: 10.1095/biolreprod.112.107284. Print 2013 May.


Chromatin architecture defines the glucocorticoid response.

Burd CJ, Archer TK.

Mol Cell Endocrinol. 2013 Nov 5;380(1-2):25-31. doi: 10.1016/j.mce.2013.03.020. Epub 2013 Mar 29. Review.


Differential responses to retinoic acid and endocrine disruptor compounds of subpopulations within human embryonic stem cell lines.

Annab LA, Bortner CD, Sifre MI, Collins JM, Shah RR, Dixon D, Karimi Kinyamu H, Archer TK.

Differentiation. 2012 Nov;84(4):330-43. doi: 10.1016/j.diff.2012.07.006. Epub 2012 Aug 18.


Analysis of chromatin dynamics during glucocorticoid receptor activation.

Burd CJ, Ward JM, Crusselle-Davis VJ, Kissling GE, Phadke D, Shah RR, Archer TK.

Mol Cell Biol. 2012 May;32(10):1805-17. doi: 10.1128/MCB.06206-11. Epub 2012 Mar 26.


Chromatin remodeling during glucocorticoid receptor regulated transactivation.

King HA, Trotter KW, Archer TK.

Biochim Biophys Acta. 2012 Jul;1819(7):716-26. doi: 10.1016/j.bbagrm.2012.02.019. Epub 2012 Mar 6. Review.


Cnot1, Cnot2, and Cnot3 maintain mouse and human ESC identity and inhibit extraembryonic differentiation.

Zheng X, Dumitru R, Lackford BL, Freudenberg JM, Singh AP, Archer TK, Jothi R, Hu G.

Stem Cells. 2012 May;30(5):910-22. doi: 10.1002/stem.1070.


Assaying chromatin structure and remodeling by restriction enzyme accessibility.

Trotter KW, Archer TK.

Methods Mol Biol. 2012;833:89-102. doi: 10.1007/978-1-61779-477-3_6.


Identification of a core member of the SWI/SNF complex, BAF155/SMARCC1, as a human tumor suppressor gene.

DelBove J, Rosson G, Strobeck M, Chen J, Archer TK, Wang W, Knudsen ES, Weissman BE.

Epigenetics. 2011 Dec;6(12):1444-53. doi: 10.4161/epi.6.12.18492.


Multiple distinct stimuli increase measured nucleosome occupancy around human promoters.

Pham CD, Sims HI, Archer TK, Schnitzler GR.

PLoS One. 2011;6(8):e23490. doi: 10.1371/journal.pone.0023490. Epub 2011 Aug 11.


The 26S proteasome: when degradation is just not enough!

Archer TK.

Biochim Biophys Acta. 2011 Feb;1809(2):65-6. doi: 10.1016/j.bbagrm.2010.11.005. Epub 2010 Dec 2. No abstract available.


Differential glucocorticoid receptor-mediated transcription mechanisms.

Aoyagi S, Archer TK.

J Biol Chem. 2011 Feb 11;286(6):4610-9. doi: 10.1074/jbc.M110.195040. Epub 2010 Dec 2.


Ubiquitin-dependent and ubiquitin-independent control of subunit stoichiometry in the SWI/SNF complex.

Keppler BR, Archer TK.

J Biol Chem. 2010 Nov 12;285(46):35665-74. doi: 10.1074/jbc.M110.173997. Epub 2010 Sep 9.


An IGF1/insulin receptor substrate-1 pathway stimulates a mitotic kinase (cdk1) in the uterine epithelium during the proliferative response to estradiol.

Walker MP, Diaugustine RP, Zeringue E, Bunger MK, Schmitt M, Archer TK, Richards RG.

J Endocrinol. 2010 Nov;207(2):225-35. doi: 10.1677/JOE-10-0102. Epub 2010 Aug 26.


Emerging roles of the 26S proteasome in nuclear hormone receptor-regulated transcription.

Keppler BR, Archer TK, Kinyamu HK.

Biochim Biophys Acta. 2011 Feb;1809(2):109-18. doi: 10.1016/j.bbagrm.2010.08.005. Epub 2010 Aug 20. Review.


Long-term low level glucocorticoid exposure induces persistent repression in chromatin.

Burkhart BA, Ivey ML, Archer TK.

Mol Cell Endocrinol. 2009 Jan 27;298(1-2):66-75. doi: 10.1016/j.mce.2008.10.011. Epub 2008 Oct 19.


UV radiation regulates Mi-2 through protein translation and stability.

Burd CJ, Kinyamu HK, Miller FW, Archer TK.

J Biol Chem. 2008 Dec 12;283(50):34976-82. doi: 10.1074/jbc.M805383200. Epub 2008 Oct 15.


Chromatin-modifying enzymes as therapeutic targets--Part 2.

Keppler BR, Archer TK.

Expert Opin Ther Targets. 2008 Nov;12(11):1457-67. doi: 10.1517/14728222.12.11.1457 . Review.


Chromatin-modifying enzymes as therapeutic targets--Part 1.

Keppler BR, Archer TK.

Expert Opin Ther Targets. 2008 Oct;12(10):1301-12. doi: 10.1517/14728222.12.10.1301 . Review.


HP1 is distributed within distinct chromatin domains at Drosophila telomeres.

Frydrychova RC, Mason JM, Archer TK.

Genetics. 2008 Sep;180(1):121-31. doi: 10.1534/genetics.108.090647. Epub 2008 Aug 24.


The Rho-Rock-Myosin signaling axis determines cell-cell integrity of self-renewing pluripotent stem cells.

Harb N, Archer TK, Sato N.

PLoS One. 2008 Aug 20;3(8):e3001. doi: 10.1371/journal.pone.0003001.


Oct4/Sox2-regulated miR-302 targets cyclin D1 in human embryonic stem cells.

Card DA, Hebbar PB, Li L, Trotter KW, Komatsu Y, Mishina Y, Archer TK.

Mol Cell Biol. 2008 Oct;28(20):6426-38. doi: 10.1128/MCB.00359-08. Epub 2008 Aug 18.


Cdx gene deficiency compromises embryonic hematopoiesis in the mouse.

Wang Y, Yabuuchi A, McKinney-Freeman S, Ducharme DM, Ray MK, Chawengsaksophak K, Archer TK, Daley GQ.

Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7756-61. doi: 10.1073/pnas.0708951105. Epub 2008 May 29.


Global changes in and characterization of specific sites of phosphorylation in mouse and human histone H1 Isoforms upon CDK inhibitor treatment using mass spectrometry.

Deterding LJ, Bunger MK, Banks GC, Tomer KB, Archer TK.

J Proteome Res. 2008 Jun;7(6):2368-79. doi: 10.1021/pr700790a. Epub 2008 Apr 17.


Chromatin modulation of glucocorticoid and progesterone receptor activity.

Archer TK, Deroo BJ, Fryer CJ.

Trends Endocrinol Metab. 1997 Dec;8(10):384-90.


The BRG1 transcriptional coregulator.

Trotter KW, Archer TK.

Nucl Recept Signal. 2008 Feb 1;6:e004. doi: 10.1621/nrs.06004. Review.


Estrogen induces estrogen-related receptor alpha gene expression and chromatin structural changes in estrogen receptor (ER)-positive and ER-negative breast cancer cells.

Hu P, Kinyamu HK, Wang L, Martin J, Archer TK, Teng C.

J Biol Chem. 2008 Mar 14;283(11):6752-63. doi: 10.1074/jbc.M705937200. Epub 2008 Jan 2.


Altered histone H1 stoichiometry and an absence of nucleosome positioning on transfected DNA.

Hebbar PB, Archer TK.

J Biol Chem. 2008 Feb 22;283(8):4595-601. Epub 2007 Dec 22.


Intersection of nuclear receptors and the proteasome on the epigenetic landscape.

Kinyamu HK, Jefferson WN, Archer TK.

Environ Mol Mutagen. 2008 Jan;49(1):83-95. Review.


The HSA domain of BRG1 mediates critical interactions required for glucocorticoid receptor-dependent transcriptional activation in vivo.

Trotter KW, Fan HY, Ivey ML, Kingston RE, Archer TK.

Mol Cell Biol. 2008 Feb;28(4):1413-26. Epub 2007 Dec 17.


Nicotinamide uncouples hormone-dependent chromatin remodeling from transcription complex assembly.

Aoyagi S, Archer TK.

Mol Cell Biol. 2008 Jan;28(1):30-9. Epub 2007 Oct 22.


Dynamics of coactivator recruitment and chromatin modifications during nuclear receptor mediated transcription.

Aoyagi S, Archer TK.

Mol Cell Endocrinol. 2008 Jan 2;280(1-2):1-5. Epub 2007 Sep 5. Review.


Transcriptional activity of the telomeric retrotransposon HeT-A in Drosophila melanogaster is stimulated as a consequence of subterminal deficiencies at homologous and nonhomologous telomeres.

Frydrychova RC, Biessmann H, Konev AY, Golubovsky MD, Johnson J, Archer TK, Mason JM.

Mol Cell Biol. 2007 Jul;27(13):4991-5001. Epub 2007 Apr 30.

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