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Identifying and validating blood mRNA biomarkers for acute and chronic insufficient sleep in humans: a machine learning approach.

Laing EE, Möller-Levet CS, Dijk DJ, Archer SN.

Sleep. 2019 Jan 1;42(1). doi: 10.1093/sleep/zsy186.


Phenotyping of PER3 variants reveals widespread effects on circadian preference, sleep regulation, and health.

Archer SN, Schmidt C, Vandewalle G, Dijk DJ.

Sleep Med Rev. 2018 Aug;40:109-126. doi: 10.1016/j.smrv.2017.10.008. Epub 2017 Nov 6. Review.


Meal Timing Regulates the Human Circadian System.

Wehrens SMT, Christou S, Isherwood C, Middleton B, Gibbs MA, Archer SN, Skene DJ, Johnston JD.

Curr Biol. 2017 Jun 19;27(12):1768-1775.e3. doi: 10.1016/j.cub.2017.04.059. Epub 2017 Jun 1.


Blood transcriptome based biomarkers for human circadian phase.

Laing EE, Möller-Levet CS, Poh N, Santhi N, Archer SN, Dijk DJ.

Elife. 2017 Feb 20;6. pii: e20214. doi: 10.7554/eLife.20214.


Transient anhedonia phenotype and altered circadian timing of behaviour during night-time dim light exposure in Per3-/- mice, but not wildtype mice.

Martynhak BJ, Hogben AL, Zanos P, Georgiou P, Andreatini R, Kitchen I, Archer SN, von Schantz M, Bailey A, van der Veen DR.

Sci Rep. 2017 Jan 10;7:40399. doi: 10.1038/srep40399.


Circadian dynamics in measures of cortical excitation and inhibition balance.

Chellappa SL, Gaggioni G, Ly JQ, Papachilleos S, Borsu C, Brzozowski A, Rosanova M, Sarasso S, Luxen A, Middleton B, Archer SN, Dijk DJ, Massimini M, Maquet P, Phillips C, Moran RJ, Vandewalle G.

Sci Rep. 2016 Sep 21;6:33661. doi: 10.1038/srep33661.


Local modulation of human brain responses by circadian rhythmicity and sleep debt.

Muto V, Jaspar M, Meyer C, Kussé C, Chellappa SL, Degueldre C, Balteau E, Shaffii-Le Bourdiec A, Luxen A, Middleton B, Archer SN, Phillips C, Collette F, Vandewalle G, Dijk DJ, Maquet P.

Science. 2016 Aug 12;353(6300):687-90. doi: 10.1126/science.aad2993. Erratum in: Science. 2016 Dec 23;354(6319):null.


Circadian regulation of human cortical excitability.

Ly JQ, Gaggioni G, Chellappa SL, Papachilleos S, Brzozowski A, Borsu C, Rosanova M, Sarasso S, Middleton B, Luxen A, Archer SN, Phillips C, Dijk DJ, Maquet P, Massimini M, Vandewalle G.

Nat Commun. 2016 Jun 24;7:11828. doi: 10.1038/ncomms11828.


Seasonality in human cognitive brain responses.

Meyer C, Muto V, Jaspar M, Kussé C, Lambot E, Chellappa SL, Degueldre C, Balteau E, Luxen A, Middleton B, Archer SN, Collette F, Dijk DJ, Phillips C, Maquet P, Vandewalle G.

Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):3066-71. doi: 10.1073/pnas.1518129113. Epub 2016 Feb 8.


How sleep and wakefulness influence circadian rhythmicity: effects of insufficient and mistimed sleep on the animal and human transcriptome.

Archer SN, Oster H.

J Sleep Res. 2015 Oct;24(5):476-93. doi: 10.1111/jsr.12307. Epub 2015 Jun 8. Review.


Exploiting human and mouse transcriptomic data: Identification of circadian genes and pathways influencing health.

Laing EE, Johnston JD, Möller-Levet CS, Bucca G, Smith CP, Dijk DJ, Archer SN.

Bioessays. 2015 May;37(5):544-56. doi: 10.1002/bies.201400193. Epub 2015 Mar 14.


Local receptors as novel regulators for peripheral clock expression.

Wu C, Sui G, Archer SN, Sassone-Corsi P, Aitken K, Bagli D, Chen Y.

FASEB J. 2014 Nov;28(11):4610-6. doi: 10.1096/fj.13-243295. Epub 2014 Aug 21.


The effect of different photoperiods in circadian rhythms of per3 knockout mice.

Pereira DS, van der Veen DR, Gonçalves BS, Tufik S, von Schantz M, Archer SN, Pedrazzoli M.

Biomed Res Int. 2014;2014:170795. doi: 10.1155/2014/170795. Epub 2014 May 8.


Polymorphisms in the circadian expressed genes PER3 and ARNTL2 are associated with diurnal preference and GNβ3 with sleep measures.

Parsons MJ, Lester KJ, Barclay NL, Archer SN, Nolan PM, Eley TC, Gregory AM.

J Sleep Res. 2014 Oct;23(5):595-604. doi: 10.1111/jsr.12144. Epub 2014 Mar 17.


A human sleep homeostasis phenotype in mice expressing a primate-specific PER3 variable-number tandem-repeat coding-region polymorphism.

Hasan S, van der Veen DR, Winsky-Sommerer R, Hogben A, Laing EE, Koentgen F, Dijk DJ, Archer SN.

FASEB J. 2014 Jun;28(6):2441-54. doi: 10.1096/fj.13-240135. Epub 2014 Feb 27.


Mistimed sleep disrupts circadian regulation of the human transcriptome.

Archer SN, Laing EE, Möller-Levet CS, van der Veen DR, Bucca G, Lazar AS, Santhi N, Slak A, Kabiljo R, von Schantz M, Smith CP, Dijk DJ.

Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):E682-91. doi: 10.1073/pnas.1316335111. Epub 2014 Jan 21.


Morning sleep inertia in alertness and performance: effect of cognitive domain and white light conditions.

Santhi N, Groeger JA, Archer SN, Gimenez M, Schlangen LJ, Dijk DJ.

PLoS One. 2013 Nov 18;8(11):e79688. doi: 10.1371/journal.pone.0079688. eCollection 2013.


Effects of insufficient sleep on circadian rhythmicity and expression amplitude of the human blood transcriptome.

Möller-Levet CS, Archer SN, Bucca G, Laing EE, Slak A, Kabiljo R, Lo JC, Santhi N, von Schantz M, Smith CP, Dijk DJ.

Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):E1132-41. doi: 10.1073/pnas.1217154110. Epub 2013 Feb 25.


Circadian period and the timing of melatonin onset in men and women: predictors of sleep during the weekend and in the laboratory.

Lazar AS, Santhi N, Hasan S, Lo JC, Johnston JD, Von Schantz M, Archer SN, Dijk DJ.

J Sleep Res. 2013 Apr;22(2):155-9. doi: 10.1111/jsr.12001. Epub 2012 Dec 6.


Effects of partial and acute total sleep deprivation on performance across cognitive domains, individuals and circadian phase.

Lo JC, Groeger JA, Santhi N, Arbon EL, Lazar AS, Hasan S, von Schantz M, Archer SN, Dijk DJ.

PLoS One. 2012;7(9):e45987. doi: 10.1371/journal.pone.0045987. Epub 2012 Sep 24.


Circadian typology: a comprehensive review.

Adan A, Archer SN, Hidalgo MP, Di Milia L, Natale V, Randler C.

Chronobiol Int. 2012 Nov;29(9):1153-75. doi: 10.3109/07420528.2012.719971. Epub 2012 Sep 24. Review.


Assessment of circadian rhythms in humans: comparison of real-time fibroblast reporter imaging with plasma melatonin.

Hasan S, Santhi N, Lazar AS, Slak A, Lo J, von Schantz M, Archer SN, Johnston JD, Dijk DJ.

FASEB J. 2012 Jun;26(6):2414-23. doi: 10.1096/fj.11-201699. Epub 2012 Feb 27.


Sleep, diurnal preference, health, and psychological well-being: a prospective single-allelic-variation study.

Lázár AS, Slak A, Lo JC, Santhi N, von Schantz M, Archer SN, Groeger JA, Dijk DJ.

Chronobiol Int. 2012 Mar;29(2):131-46. doi: 10.3109/07420528.2011.641193.


Interindividual differences in circadian rhythmicity and sleep homeostasis in older people: effect of a PER3 polymorphism.

Viola AU, Chellappa SL, Archer SN, Pugin F, Götz T, Dijk DJ, Cajochen C.

Neurobiol Aging. 2012 May;33(5):1010.e17-27. doi: 10.1016/j.neurobiolaging.2011.10.024. Epub 2011 Dec 14.


The spectral composition of evening light and individual differences in the suppression of melatonin and delay of sleep in humans.

Santhi N, Thorne HC, van der Veen DR, Johnsen S, Mills SL, Hommes V, Schlangen LJ, Archer SN, Dijk DJ.

J Pineal Res. 2012 Aug;53(1):47-59. doi: 10.1111/j.1600-079X.2011.00970.x. Epub 2011 Oct 24.


Altered sleep and behavioral activity phenotypes in PER3-deficient mice.

Hasan S, van der Veen DR, Winsky-Sommerer R, Dijk DJ, Archer SN.

Am J Physiol Regul Integr Comp Physiol. 2011 Dec;301(6):R1821-30. doi: 10.1152/ajpregu.00260.2011. Epub 2011 Sep 28.


Sleep quality and diurnal preference in a sample of young adults: associations with 5HTTLPR, PER3, and CLOCK 3111.

Barclay NL, Eley TC, Mill J, Wong CC, Zavos HM, Archer SN, Gregory AM.

Am J Med Genet B Neuropsychiatr Genet. 2011 Sep;156B(6):681-90. doi: 10.1002/ajmg.b.31210. Epub 2011 Jun 28.


Effects of light on cognitive brain responses depend on circadian phase and sleep homeostasis.

Vandewalle G, Archer SN, Wuillaume C, Balteau E, Degueldre C, Luxen A, Dijk DJ, Maquet P.

J Biol Rhythms. 2011 Jun;26(3):249-59. doi: 10.1177/0748730411401736.


Polymorphism in the PER3 promoter associates with diurnal preference and delayed sleep phase disorder.

Archer SN, Carpen JD, Gibson M, Lim GH, Johnston JD, Skene DJ, von Schantz M.

Sleep. 2010 May;33(5):695-701.


Diurnal preference and sleep quality: same genes? A study of young adult twins.

Barclay NL, Eley TC, Buysse DJ, Archer SN, Gregory AM.

Chronobiol Int. 2010 Jan;27(2):278-96. doi: 10.3109/07420521003663801.


Light-dependent behavioral phenotypes in PER3-deficient mice.

van der Veen DR, Archer SN.

J Biol Rhythms. 2010 Feb;25(1):3-8. doi: 10.1177/0748730409356680. Erratum in: J Biol Rhythms. 2010 Apr;25(2):150.


PERIOD3, circadian phenotypes, and sleep homeostasis.

Dijk DJ, Archer SN.

Sleep Med Rev. 2010 Jun;14(3):151-60. doi: 10.1016/j.smrv.2009.07.002. Epub 2009 Aug 29. Review.


Daily light exposure profiles in older non-resident extreme morning and evening types.

Staples VS, Archer SN, Arber S, Skene DJ.

J Sleep Res. 2009 Dec;18(4):466-71. doi: 10.1111/j.1365-2869.2009.00762.x. Epub 2009 Aug 19.


Daily and seasonal variation in the spectral composition of light exposure in humans.

Thorne HC, Jones KH, Peters SP, Archer SN, Dijk DJ.

Chronobiol Int. 2009 Jul;26(5):854-66. doi: 10.1080/07420520903044315.


Functional magnetic resonance imaging-assessed brain responses during an executive task depend on interaction of sleep homeostasis, circadian phase, and PER3 genotype.

Vandewalle G, Archer SN, Wuillaume C, Balteau E, Degueldre C, Luxen A, Maquet P, Dijk DJ.

J Neurosci. 2009 Jun 24;29(25):7948-56. doi: 10.1523/JNEUROSCI.0229-09.2009.


Light, sleep, and circadian rhythms: together again.

Dijk DJ, Archer SN.

PLoS Biol. 2009 Jun 16;7(6):e1000145. doi: 10.1371/journal.pbio.1000145. Epub 2009 Jun 23. No abstract available.


Blue-light phase shifts PER3 gene expression in human leukocytes.

Ackermann K, Sletten TL, Revell VL, Archer SN, Skene DJ.

Chronobiol Int. 2009 May;26(4):769-79. doi: 10.1080/07420520902929045.


Association between specific diurnal preference questionnaire items and PER3 VNTR genotype.

Ellis J, von Schantz M, Jones KH, Archer SN.

Chronobiol Int. 2009 Apr;26(3):464-73. doi: 10.1080/07420520902820970.


PER3 polymorphism and cardiac autonomic control: effects of sleep debt and circadian phase.

Viola AU, James LM, Archer SN, Dijk DJ.

Am J Physiol Heart Circ Physiol. 2008 Nov;295(5):H2156-63. doi: 10.1152/ajpheart.00662.2008. Epub 2008 Oct 3.


Early morning executive functioning during sleep deprivation is compromised by a PERIOD3 polymorphism.

Groeger JA, Viola AU, Lo JC, von Schantz M, Archer SN, Dijk DJ.

Sleep. 2008 Aug;31(8):1159-67.


Conscientiousness is a predictor of diurnal preference.

Hogben AL, Ellis J, Archer SN, von Schantz M.

Chronobiol Int. 2007;24(6):1249-54.


PER3 polymorphism predicts sleep structure and waking performance.

Viola AU, Archer SN, James LM, Groeger JA, Lo JC, Skene DJ, von Schantz M, Dijk DJ.

Curr Biol. 2007 Apr 3;17(7):613-8. Epub 2007 Mar 8.


Age-related change in the association between a polymorphism in the PER3 gene and preferred timing of sleep and waking activities.

Jones KH, Ellis J, von Schantz M, Skene DJ, Dijk DJ, Archer SN.

J Sleep Res. 2007 Mar;16(1):12-6.


A silent polymorphism in the PER1 gene associates with extreme diurnal preference in humans.

Carpen JD, von Schantz M, Smits M, Skene DJ, Archer SN.

J Hum Genet. 2006;51(12):1122-5. Epub 2006 Oct 19.


Evolutionary history of the vertebrate period genes.

von Schantz M, Jenkins A, Archer SN.

J Mol Evol. 2006 Jun;62(6):701-7. Epub 2006 Apr 28.


Expansion during primate radiation of a variable number tandem repeat in the coding region of the circadian clock gene period3.

Jenkins A, Archer SN, von Schantz M.

J Biol Rhythms. 2005 Oct;20(5):470-2. No abstract available.


A single-nucleotide polymorphism in the 5'-untranslated region of the hPER2 gene is associated with diurnal preference.

Carpen JD, Archer SN, Skene DJ, Smits M, von Schantz M.

J Sleep Res. 2005 Sep;14(3):293-7.


Absence of phosphoglucose isomerase-1 in retinal photoreceptor, pigment epithelium and Muller cells.

Archer SN, Ahuja P, Caffé R, Mikol C, Foster RG, van Veen T, von Schantz M.

Eur J Neurosci. 2004 Jun;19(11):2923-30.


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