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Items: 1 to 50 of 56

1.

Exploring uncertainty measures in deep networks for Multiple sclerosis lesion detection and segmentation.

Nair T, Precup D, Arnold DL, Arbel T.

Med Image Anal. 2020 Jan;59:101557. doi: 10.1016/j.media.2019.101557. Epub 2019 Sep 7.

PMID:
31677438
2.

Stroke Lesion Segmentation in FLAIR MRI Datasets Using Customized Markov Random Fields.

Subbanna NK, Rajashekar D, Cheng B, Thomalla G, Fiehler J, Arbel T, Forkert ND.

Front Neurol. 2019 May 24;10:541. doi: 10.3389/fneur.2019.00541. eCollection 2019.

3.

Author Correction: Why rankings of biomedical image analysis competitions should be interpreted with care.

Maier-Hein L, Eisenmann M, Reinke A, Onogur S, Stankovic M, Scholz P, Arbel T, Bogunovic H, Bradley AP, Carass A, Feldmann C, Frangi AF, Full PM, van Ginneken B, Hanbury A, Honauer K, Kozubek M, Landman BA, März K, Maier O, Maier-Hein K, Menze BH, Müller H, Neher PF, Niessen W, Rajpoot N, Sharp GC, Sirinukunwattana K, Speidel S, Stock C, Stoyanov D, Taha AA, van der Sommen F, Wang CW, Weber MA, Zheng G, Jannin P, Kopp-Schneider A.

Nat Commun. 2019 Jan 30;10(1):588. doi: 10.1038/s41467-019-08563-w.

4.

Why rankings of biomedical image analysis competitions should be interpreted with care.

Maier-Hein L, Eisenmann M, Reinke A, Onogur S, Stankovic M, Scholz P, Arbel T, Bogunovic H, Bradley AP, Carass A, Feldmann C, Frangi AF, Full PM, van Ginneken B, Hanbury A, Honauer K, Kozubek M, Landman BA, März K, Maier O, Maier-Hein K, Menze BH, Müller H, Neher PF, Niessen W, Rajpoot N, Sharp GC, Sirinukunwattana K, Speidel S, Stock C, Stoyanov D, Taha AA, van der Sommen F, Wang CW, Weber MA, Zheng G, Jannin P, Kopp-Schneider A.

Nat Commun. 2018 Dec 6;9(1):5217. doi: 10.1038/s41467-018-07619-7. Erratum in: Nat Commun. 2019 Jan 30;10(1):588.

5.

Combining intraoperative ultrasound brain shift correction and augmented reality visualizations: a pilot study of eight cases.

Gerard IJ, Kersten-Oertel M, Drouin S, Hall JA, Petrecca K, De Nigris D, Di Giovanni DA, Arbel T, Collins DL.

J Med Imaging (Bellingham). 2018 Apr;5(2):021210. doi: 10.1117/1.JMI.5.2.021210. Epub 2018 Jan 26.

6.

Longitudinal multiple sclerosis lesion segmentation: Resource and challenge.

Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, Button J, Nguyen J, Prados F, Sudre CH, Jorge Cardoso M, Cawley N, Ciccarelli O, Wheeler-Kingshott CAM, Ourselin S, Catanese L, Deshpande H, Maurel P, Commowick O, Barillot C, Tomas-Fernandez X, Warfield SK, Vaidya S, Chunduru A, Muthuganapathy R, Krishnamurthi G, Jesson A, Arbel T, Maier O, Handels H, Iheme LO, Unay D, Jain S, Sima DM, Smeets D, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Bazin PL, Calabresi PA, Crainiceanu CM, Ellingsen LM, Reich DS, Prince JL, Pham DL.

Neuroimage. 2017 Mar 1;148:77-102. doi: 10.1016/j.neuroimage.2016.12.064. Epub 2017 Jan 11.

7.

IBIS: an OR ready open-source platform for image-guided neurosurgery.

Drouin S, Kochanowska A, Kersten-Oertel M, Gerard IJ, Zelmann R, De Nigris D, Bériault S, Arbel T, Sirhan D, Sadikot AF, Hall JA, Sinclair DS, Petrecca K, DelMaestro RF, Collins DL.

Int J Comput Assist Radiol Surg. 2017 Mar;12(3):363-378. doi: 10.1007/s11548-016-1478-0. Epub 2016 Aug 31. Review.

PMID:
27581336
8.

Evaluation of state-of-the-art segmentation algorithms for left ventricle infarct from late Gadolinium enhancement MR images.

Karim R, Bhagirath P, Claus P, James Housden R, Chen Z, Karimaghaloo Z, Sohn HM, Lara Rodríguez L, Vera S, Albà X, Hennemuth A, Peitgen HO, Arbel T, Gonzàlez Ballester MA, Frangi AF, Götte M, Razavi R, Schaeffter T, Rhode K.

Med Image Anal. 2016 May;30:95-107. doi: 10.1016/j.media.2016.01.004. Epub 2016 Jan 28.

9.

Hierarchical Spatio-Temporal Probabilistic Graphical Model with Multiple Feature Fusion for Binary Facial Attribute Classification in Real-World Face Videos.

Demirkus M, Precup D, Clark JJ, Arbel T.

IEEE Trans Pattern Anal Mach Intell. 2016 Jun;38(6):1185-203. doi: 10.1109/TPAMI.2015.2481396. Epub 2015 Sep 23.

PMID:
26415152
10.
11.

Adaptive multi-level conditional random fields for detection and segmentation of small enhanced pathology in medical images.

Karimaghaloo Z, Arnold DL, Arbel T.

Med Image Anal. 2016 Jan;27:17-30. doi: 10.1016/j.media.2015.06.004. Epub 2015 Jul 11.

PMID:
26211811
12.

Probabilistic multiple sclerosis lesion classification based on modeling regional intensity variability and local neighborhood information.

Harmouche R, Subbanna NK, Collins DL, Arnold DL, Arbel T.

IEEE Trans Biomed Eng. 2015 May;62(5):1281-92. doi: 10.1109/TBME.2014.2385635. Epub 2014 Dec 23.

PMID:
25546852
13.

Temporal Hierarchical Adaptive Texture CRF for Automatic Detection of Gadolinium-Enhancing Multiple Sclerosis Lesions in Brain MRI.

Karimaghaloo Z, Rivaz H, Arnold DL, Collins DL, Arbel T.

IEEE Trans Med Imaging. 2015 Jun;34(6):1227-41. doi: 10.1109/TMI.2014.2382561. Epub 2014 Dec 18.

PMID:
25532171
14.

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Menze BH, Jakab A, Bauer S, Kalpathy-Cramer J, Farahani K, Kirby J, Burren Y, Porz N, Slotboom J, Wiest R, Lanczi L, Gerstner E, Weber MA, Arbel T, Avants BB, Ayache N, Buendia P, Collins DL, Cordier N, Corso JJ, Criminisi A, Das T, Delingette H, Demiralp Ç, Durst CR, Dojat M, Doyle S, Festa J, Forbes F, Geremia E, Glocker B, Golland P, Guo X, Hamamci A, Iftekharuddin KM, Jena R, John NM, Konukoglu E, Lashkari D, Mariz JA, Meier R, Pereira S, Precup D, Price SJ, Raviv TR, Reza SM, Ryan M, Sarikaya D, Schwartz L, Shin HC, Shotton J, Silva CA, Sousa N, Subbanna NK, Szekely G, Taylor TJ, Thomas OM, Tustison NJ, Unal G, Vasseur F, Wintermark M, Ye DH, Zhao L, Zhao B, Zikic D, Prastawa M, Reyes M, Van Leemput K.

IEEE Trans Med Imaging. 2015 Oct;34(10):1993-2024. doi: 10.1109/TMI.2014.2377694. Epub 2014 Dec 4. Review.

15.

Adaptive voxel, texture and temporal conditional random fields for detection of Gad-enhancing multiple sclerosis lesions in brain MRI.

Karimaghaloo Z, Rivaz H, Arnold DL, Collins DL, Arbel T.

Med Image Comput Comput Assist Interv. 2013;16(Pt 3):543-50.

PMID:
24505804
16.

Hierarchical probabilistic Gabor and MRF segmentation of brain tumours in MRI volumes.

Subbanna NK, Precup D, Collins DL, Arbel T.

Med Image Comput Comput Assist Interv. 2013;16(Pt 1):751-8.

PMID:
24505735
17.

Uncertainty driven probabilistic voxel selection for image registration.

Oreshkin BN, Arbel T.

IEEE Trans Med Imaging. 2013 Oct;32(10):1777-90. doi: 10.1109/TMI.2013.2264467. Epub 2013 May 21.

PMID:
23708789
18.

Temporally consistent probabilistic detection of new multiple sclerosis lesions in brain MRI.

Elliott C, Arnold DL, Collins DL, Arbel T.

IEEE Trans Med Imaging. 2013 Aug;32(8):1490-503. doi: 10.1109/TMI.2013.2258403. Epub 2013 Apr 16.

PMID:
23613032
19.

Fast rigid registration of pre-operative magnetic resonance images to intra-operative ultrasound for neurosurgery based on high confidence gradient orientations.

De Nigris D, Collins DL, Arbel T.

Int J Comput Assist Radiol Surg. 2013 Jul;8(4):649-61. doi: 10.1007/s11548-013-0826-6. Epub 2013 Mar 21.

PMID:
23515899
20.

Hierarchical conditional random fields for detection of gad-enhancing lesions in multiple sclerosis.

Karimaghaloo Z, Arnold DL, Collins DL, Arbel T.

Med Image Comput Comput Assist Interv. 2012;15(Pt 2):379-86.

PMID:
23286071
21.

Multi-modal image registration based on gradient orientations of minimal uncertainty.

De Nigris D, Collins DL, Arbel T.

IEEE Trans Med Imaging. 2012 Dec;31(12):2343-54. doi: 10.1109/TMI.2012.2218116. Epub 2012 Sep 10.

PMID:
22987509
22.

Automatic detection of gadolinium-enhancing multiple sclerosis lesions in brain MRI using conditional random fields.

Karimaghaloo Z, Shah M, Francis SJ, Arnold DL, Collins DL, Arbel T.

IEEE Trans Med Imaging. 2012 Jun;31(6):1181-94. doi: 10.1109/TMI.2012.2186639. Epub 2012 Feb 3.

PMID:
22318484
23.

Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge.

Murphy K, van Ginneken B, Reinhardt JM, Kabus S, Ding K, Deng X, Cao K, Du K, Christensen GE, Garcia V, Vercauteren T, Ayache N, Commowick O, Malandain G, Glocker B, Paragios N, Navab N, Gorbunova V, Sporring J, de Bruijne M, Han X, Heinrich MP, Schnabel JA, Jenkinson M, Lorenz C, Modat M, McClelland JR, Ourselin S, Muenzing SE, Viergever MA, De Nigris D, Collins DL, Arbel T, Peroni M, Li R, Sharp GC, Schmidt-Richberg A, Ehrhardt J, Werner R, Smeets D, Loeckx D, Song G, Tustison N, Avants B, Gee JC, Staring M, Klein S, Stoel BC, Urschler M, Werlberger M, Vandemeulebroucke J, Rit S, Sarrut D, Pluim JP.

IEEE Trans Med Imaging. 2011 Nov;30(11):1901-20. doi: 10.1109/TMI.2011.2158349. Epub 2011 May 31.

PMID:
21632295
24.

Evaluating intensity normalization on MRIs of human brain with multiple sclerosis.

Shah M, Xiao Y, Subbanna N, Francis S, Arnold DL, Collins DL, Arbel T.

Med Image Anal. 2011 Apr;15(2):267-82. doi: 10.1016/j.media.2010.12.003. Epub 2010 Dec 25.

PMID:
21233004
25.

Learning to estimate out-of-plane motion in ultrasound imagery of real tissue.

Laporte C, Arbel T.

Med Image Anal. 2011 Apr;15(2):202-13. doi: 10.1016/j.media.2010.08.006. Epub 2010 Sep 18.

PMID:
21185224
26.

Detection of Gad-enhancing lesions in multiple sclerosis using conditional random fields.

Karimaghaloo Z, Shah M, Francis SJ, Arnold DL, Collins DL, Arbel T.

Med Image Comput Comput Assist Interv. 2010;13(Pt 3):41-8.

PMID:
20879381
27.

Hierarchical multimodal image registration based on adaptive local mutual information.

De Nigris D, Mercier L, Del Maestro R, Collins DL, Arbel T.

Med Image Comput Comput Assist Interv. 2010;13(Pt 2):643-51.

PMID:
20879370
28.

Bayesian classification of multiple sclerosis lesions in longitudinal MRI using subtraction images.

Elliott C, Francis SJ, Arnold DL, Collins DL, Arbel T.

Med Image Comput Comput Assist Interv. 2010;13(Pt 2):290-7.

PMID:
20879327
29.

Measurement selection in untracked freehand 3D ultrasound.

Laporte C, Arbel T.

Med Image Comput Comput Assist Interv. 2010;13(Pt 1):127-34.

PMID:
20879223
30.

Feature-based morphometry: discovering group-related anatomical patterns.

Toews M, Wells W 3rd, Collins DL, Arbel T.

Neuroimage. 2010 Feb 1;49(3):2318-27. doi: 10.1016/j.neuroimage.2009.10.032. Epub 2009 Oct 21.

31.

Detection, localization, and sex classification of faces from arbitrary viewpoints and under occlusion.

Toews M, Arbel T.

IEEE Trans Pattern Anal Mach Intell. 2009 Sep;31(9):1567-81. doi: 10.1109/TPAMI.2008.233.

PMID:
19574619
32.

Generalized poisson 3-D scatterer distributions.

Laporte C, Clark JJ, Arbel T.

IEEE Trans Ultrason Ferroelectr Freq Control. 2009 Feb;56(2):410-4. doi: 10.1109/TUFFC.2009.1052.

PMID:
19251530
33.

Feature-based morphometry.

Toews M, Wells WM 3rd, Collins DL, Arbel T.

Med Image Comput Comput Assist Interv. 2009;12(Pt 2):109-16.

34.

Deformable ultrasound registration without reconstruction.

Brooks R, Collins DL, Morandi X, Arbel T.

Med Image Comput Comput Assist Interv. 2008;11(Pt 2):1023-31.

PMID:
18982705
35.

Combinatorial and probabilistic fusion of noisy correlation measurements for untracked freehand 3-D ultrasound.

Laporte C, Arbel T.

IEEE Trans Med Imaging. 2008;27(7):984-94. doi: 10.1109/TMI.2008.923704.

PMID:
18599403
36.

Probabilistic speckle decorrelation for 3D ultrasound.

Laporte C, Arbel T.

Med Image Comput Comput Assist Interv. 2007;10(Pt 1):925-32.

PMID:
18051147
37.

A statistical parts-based model of anatomical variability.

Toews M, Arbel T.

IEEE Trans Med Imaging. 2007 Apr;26(4):497-508. Erratum in: IEEE Trans Med Imaging. 2007 May;26(5):757.

PMID:
17427737
38.

A statistical parts-based appearance model of inter-subject variability.

Toews M, Collins DL, Arbel T.

Med Image Comput Comput Assist Interv. 2006;9(Pt 1):232-40.

PMID:
17354895
39.

Maximum a posteriori local histogram estimation for image registration.

Toews M, Collins DL, Arbel T.

Med Image Comput Comput Assist Interv. 2005;8(Pt 2):163-70.

PMID:
16685956
40.

Automatic non-linear MRI-ultrasound registration for the correction of intra-operative brain deformations.

Arbel T, Morandi X, Comeau RM, Collins DL.

Comput Aided Surg. 2004;9(4):123-36.

PMID:
16192052
41.
42.

Identification of novel Drosophila meiotic genes recovered in a P-element screen.

Sekelsky JJ, McKim KS, Messina L, French RL, Hurley WD, Arbel T, Chin GM, Deneen B, Force SJ, Hari KL, Jang JK, Laurençon AC, Madden LD, Matthies HJ, Milliken DB, Page SL, Ring AD, Wayson SM, Zimmerman CC, Hawley RS.

Genetics. 1999 Jun;152(2):529-42.

43.

[Syndrome X--insulin resistance and common metabolic disorders].

Geffel D, Arbel T, Zimlichman R.

Harefuah. 1996 Oct;131(7-8):275-9. Review. Hebrew. No abstract available.

PMID:
8940528
44.

Induction of metaphase arrest in Drosophila oocytes by chiasma-based kinetochore tension.

Jang JK, Messina L, Erdman MB, Arbel T, Hawley RS.

Science. 1995 Jun 30;268(5219):1917-9.

PMID:
7604267
46.

Yeast genetics and the fall of the classical view of meiosis.

Hawley RS, Arbel T.

Cell. 1993 Feb 12;72(3):301-3. Review. No abstract available.

PMID:
8431941
47.
48.
49.

Meiotic segregation in Drosophila melanogaster females: molecules, mechanisms, and myths.

Hawley RS, McKim KS, Arbel T.

Annu Rev Genet. 1993;27:281-317. Review. No abstract available.

PMID:
8122905
50.

Multiple sites for double-strand breaks in whole meiotic chromosomes of Saccharomyces cerevisiae.

Zenvirth D, Arbel T, Sherman A, Goldway M, Klein S, Simchen G.

EMBO J. 1992 Sep;11(9):3441-7.

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