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Programmable DNA cleavage by Ago nucleases from mesophilic bacteria Clostridium butyricum and Limnothrix rosea.

Kuzmenko A, Yudin D, Ryazansky S, Kulbachinskiy A, Aravin AA.

Nucleic Acids Res. 2019 May 22. pii: gkz379. doi: 10.1093/nar/gkz379. [Epub ahead of print]


piRNA silencing contributes to interspecies hybrid sterility and reproductive isolation in Drosophila melanogaster.

Kotov AA, Adashev VE, Godneeva BK, Ninova M, Shatskikh AS, Bazylev SS, Aravin AA, Olenina LV.

Nucleic Acids Res. 2019 Feb 21. pii: gkz130. doi: 10.1093/nar/gkz130. [Epub ahead of print]


The Expanded Universe of Prokaryotic Argonaute Proteins.

Ryazansky S, Kulbachinskiy A, Aravin AA.

MBio. 2018 Dec 18;9(6). pii: e01935-18. doi: 10.1128/mBio.01935-18.


DNA interference and beyond: structure and functions of prokaryotic Argonaute proteins.

Lisitskaya L, Aravin AA, Kulbachinskiy A.

Nat Commun. 2018 Dec 4;9(1):5165. doi: 10.1038/s41467-018-07449-7. Review.


Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.

Liu Y, Esyunina D, Olovnikov I, Teplova M, Kulbachinskiy A, Aravin AA, Patel DJ.

Cell Rep. 2018 Jul 10;24(2):453-462. doi: 10.1016/j.celrep.2018.06.021.


Argonaute Proteins and Mechanisms of RNA Interference in Eukaryotes and Prokaryotes.

Olina AV, Kulbachinskiy AV, Aravin AA, Esyunina DM.

Biochemistry (Mosc). 2018 May;83(5):483-497. doi: 10.1134/S0006297918050024. Review.


piRNA Biogenesis in Drosophila melanogaster.

Huang X, Fejes Tóth K, Aravin AA.

Trends Genet. 2017 Nov;33(11):882-894. doi: 10.1016/j.tig.2017.09.002. Epub 2017 Sep 27. Review.


Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors.

Chen YA, Stuwe E, Luo Y, Ninova M, Le Thomas A, Rozhavskaya E, Li S, Vempati S, Laver JD, Patel DJ, Smibert CA, Lipshitz HD, Toth KF, Aravin AA.

Mol Cell. 2016 Jul 7;63(1):97-109. doi: 10.1016/j.molcel.2016.05.010. Epub 2016 Jun 9.


Splicing-independent loading of TREX on nascent RNA is required for efficient expression of dual-strand piRNA clusters in Drosophila.

Hur JK, Luo Y, Moon S, Ninova M, Marinov GK, Chung YD, Aravin AA.

Genes Dev. 2016 Apr 1;30(7):840-55. doi: 10.1101/gad.276030.115.


Aub and Ago3 Are Recruited to Nuage through Two Mechanisms to Form a Ping-Pong Complex Assembled by Krimper.

Webster A, Li S, Hur JK, Wachsmuth M, Bois JS, Perkins EM, Patel DJ, Aravin AA.

Mol Cell. 2015 Aug 20;59(4):564-75. doi: 10.1016/j.molcel.2015.07.017.


MIWI2 and MILI Have Differential Effects on piRNA Biogenesis and DNA Methylation.

Manakov SA, Pezic D, Marinov GK, Pastor WA, Sachidanandam R, Aravin AA.

Cell Rep. 2015 Aug 25;12(8):1234-43. doi: 10.1016/j.celrep.2015.07.036. Epub 2015 Aug 13.


Erratum: MORC1 represses transposable elements in the mouse male germline.

Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE.

Nat Commun. 2015 Jul 10;6:7604. doi: 10.1038/ncomms8604. No abstract available.


Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified.

Marinov GK, Wang J, Handler D, Wold BJ, Weng Z, Hannon GJ, Aravin AA, Zamore PD, Brennecke J, Toth KF.

Dev Cell. 2015 Mar 23;32(6):765-71. doi: 10.1016/j.devcel.2015.01.013.


MORC1 represses transposable elements in the mouse male germline.

Pastor WA, Stroud H, Nee K, Liu W, Pezic D, Manakov S, Lee SA, Moissiard G, Zamudio N, Bourc'his D, Aravin AA, Clark AT, Jacobsen SE.

Nat Commun. 2014 Dec 12;5:5795. doi: 10.1038/ncomms6795. Erratum in: Nat Commun. 2015;6:7604.


A transgenerational process defines piRNA biogenesis in Drosophila virilis.

Le Thomas A, Marinov GK, Aravin AA.

Cell Rep. 2014 Sep 25;8(6):1617-1623. doi: 10.1016/j.celrep.2014.08.013. Epub 2014 Sep 4.


Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing.

Le Thomas A, Stuwe E, Li S, Du J, Marinov G, Rozhkov N, Chen YC, Luo Y, Sachidanandam R, Toth KF, Patel D, Aravin AA.

Genes Dev. 2014 Aug 1;28(15):1667-80. doi: 10.1101/gad.245514.114.


Two waves of de novo methylation during mouse germ cell development.

Molaro A, Falciatori I, Hodges E, Aravin AA, Marran K, Rafii S, McCombie WR, Smith AD, Hannon GJ.

Genes Dev. 2014 Jul 15;28(14):1544-9. doi: 10.1101/gad.244350.114.


piRNA pathway targets active LINE1 elements to establish the repressive H3K9me3 mark in germ cells.

Pezic D, Manakov SA, Sachidanandam R, Aravin AA.

Genes Dev. 2014 Jul 1;28(13):1410-28. doi: 10.1101/gad.240895.114. Epub 2014 Jun 17.


Prokaryotic Argonautes defend genomes against invasive DNA.

Hur JK, Olovnikov I, Aravin AA.

Trends Biochem Sci. 2014 Jun;39(6):257-9. doi: 10.1016/j.tibs.2014.04.006. Epub 2014 May 13.


Small but sturdy: small RNAs in cellular memory and epigenetics.

Stuwe E, Tóth KF, Aravin AA.

Genes Dev. 2014 Mar 1;28(5):423-31. doi: 10.1101/gad.236414.113. Review.


To be or not to be a piRNA: genomic origin and processing of piRNAs.

Le Thomas A, Tóth KF, Aravin AA.

Genome Biol. 2014 Jan 27;15(1):204. doi: 10.1186/gb4154. Review.


A framework for piRNA cluster manipulation.

Olovnikov I, Le Thomas A, Aravin AA.

Methods Mol Biol. 2014;1093:47-58. doi: 10.1007/978-1-62703-694-8_5.


Bacterial argonaute samples the transcriptome to identify foreign DNA.

Olovnikov I, Chan K, Sachidanandam R, Newman DK, Aravin AA.

Mol Cell. 2013 Sep 12;51(5):594-605. doi: 10.1016/j.molcel.2013.08.014.


Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state.

Le Thomas A, Rogers AK, Webster A, Marinov GK, Liao SE, Perkins EM, Hur JK, Aravin AA, Tóth KF.

Genes Dev. 2013 Feb 15;27(4):390-9. doi: 10.1101/gad.209841.112. Epub 2013 Feb 7.


Mapping of cis-regulatory sites in the promoter of testis-specific stellate genes of Drosophila melanogaster.

Olenkina OM, Egorova KS, Aravin AA, Naumova NM, Gvozdev VA, Olenina LV.

Biochemistry (Mosc). 2012 Nov;77(11):1285-93. doi: 10.1134/S0006297912110077.


Small RNA in the nucleus: the RNA-chromatin ping-pong.

Olovnikov I, Aravin AA, Fejes Toth K.

Curr Opin Genet Dev. 2012 Apr;22(2):164-71. doi: 10.1016/j.gde.2012.01.002. Epub 2012 Feb 19. Review.


Production of artificial piRNAs in flies and mice.

Muerdter F, Olovnikov I, Molaro A, Rozhkov NV, Czech B, Gordon A, Hannon GJ, Aravin AA.

RNA. 2012 Jan;18(1):42-52. doi: 10.1261/rna.029769.111. Epub 2011 Nov 17.


PIWI-interacting small RNAs: the vanguard of genome defence.

Siomi MC, Sato K, Pezic D, Aravin AA.

Nat Rev Mol Cell Biol. 2011 Apr;12(4):246-58. doi: 10.1038/nrm3089. Review.


piRNAs meet mitochondria.

Aravin AA, Chan DC.

Dev Cell. 2011 Mar 15;20(3):287-8. doi: 10.1016/j.devcel.2011.03.003.


Small RNA-based silencing strategies for transposons in the process of invading Drosophila species.

Rozhkov NV, Aravin AA, Zelentsova ES, Schostak NG, Sachidanandam R, McCombie WR, Hannon GJ, Evgen'ev MB.

RNA. 2010 Aug;16(8):1634-45. doi: 10.1261/rna.2217810. Epub 2010 Jun 25.


The RNA interference system differently responds to the same mobile element in distant Drosophila species.

Rozhkov NV, Aravin AA, Sachidanandam R, Hannon GJ, Sokolova ON, Zelentsova ES, Shostak NG, Evgen'ev MB.

Dokl Biochem Biophys. 2010 Mar-Apr;431:79-81. No abstract available.


Cytoplasmic compartmentalization of the fetal piRNA pathway in mice.

Aravin AA, van der Heijden GW, Castañeda J, Vagin VV, Hannon GJ, Bortvin A.

PLoS Genet. 2009 Dec;5(12):e1000764. doi: 10.1371/journal.pgen.1000764. Epub 2009 Dec 11.


Arginine methylation as a molecular signature of the Piwi small RNA pathway.

Vagin VV, Hannon GJ, Aravin AA.

Cell Cycle. 2009 Dec 15;8(24):4003-4. Epub 2009 Dec 21. No abstract available.


Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members.

Vagin VV, Wohlschlegel J, Qu J, Jonsson Z, Huang X, Chuma S, Girard A, Sachidanandam R, Hannon GJ, Aravin AA.

Genes Dev. 2009 Aug 1;23(15):1749-62. doi: 10.1101/gad.1814809. Epub 2009 Jul 7.


Small RNA silencing pathways in germ and stem cells.

Aravin AA, Hannon GJ.

Cold Spring Harb Symp Quant Biol. 2008;73:283-90. doi: 10.1101/sqb.2008.73.058. Epub 2009 Mar 6. Review.


An epigenetic role for maternally inherited piRNAs in transposon silencing.

Brennecke J, Malone CD, Aravin AA, Sachidanandam R, Stark A, Hannon GJ.

Science. 2008 Nov 28;322(5906):1387-92. doi: 10.1126/science.1165171.


A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.

Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ.

Mol Cell. 2008 Sep 26;31(6):785-99. doi: 10.1016/j.molcel.2008.09.003.


Small RNA guides for de novo DNA methylation in mammalian germ cells.

Aravin AA, Bourc'his D.

Genes Dev. 2008 Apr 15;22(8):970-5. doi: 10.1101/gad.1669408.


Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes.

Tam OH, Aravin AA, Stein P, Girard A, Murchison EP, Cheloufi S, Hodges E, Anger M, Sachidanandam R, Schultz RM, Hannon GJ.

Nature. 2008 May 22;453(7194):534-8. doi: 10.1038/nature06904. Epub 2008 Apr 10.


Analysis of large-scale sequencing of small RNAs.

Olson AJ, Brennecke J, Aravin AA, Hannon GJ, Sachidanandam R.

Pac Symp Biocomput. 2008:126-36.


The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race.

Aravin AA, Hannon GJ, Brennecke J.

Science. 2007 Nov 2;318(5851):761-4. Review.


Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline.

Klenov MS, Lavrov SA, Stolyarenko AD, Ryazansky SS, Aravin AA, Tuschl T, Gvozdev VA.

Nucleic Acids Res. 2007;35(16):5430-8. Epub 2007 Aug 15.


Developmentally regulated piRNA clusters implicate MILI in transposon control.

Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ.

Science. 2007 May 4;316(5825):744-7. Epub 2007 Apr 19.


Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ.

Cell. 2007 Mar 23;128(6):1089-103. Epub 2007 Mar 8.


Dissection of a natural RNA silencing process in the Drosophila melanogaster germ line.

Aravin AA, Klenov MS, Vagin VV, Bantignies F, Cavalli G, Gvozdev VA.

Mol Cell Biol. 2004 Aug;24(15):6742-50.


The small RNA profile during Drosophila melanogaster development.

Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T.

Dev Cell. 2003 Aug;5(2):337-50.


The GATE retrotransposon in Drosophila melanogaster: mobility in heterochromatin and aspects of its expression in germline tissues.

Kogan GL, Tulin AV, Aravin AA, Abramov YA, Kalmykova AI, Maisonhaute C, Gvozdev VA.

Mol Genet Genomics. 2003 May;269(2):234-42. Epub 2003 Mar 14.


Stellate repeats: targets of silencing and modules causing cis-inactivation and trans-activation.

Gvozdev VA, Aravin AA, Abramov YA, Klenov MS, Kogan GL, Lavrov SA, Naumova NM, Olenkina OM, Tulin AV, Vagin VV.

Genetica. 2003 Mar;117(2-3):239-45.


[The phenomenon of RNA interference and development of organism].

Aravin AA, Vagin VV, Naumova NM, Rozovskiĭ IaM, Klenov MS, Gvozdev VA.

Ontogenez. 2002 Sep-Oct;33(5):349-60. Review. Russian.


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