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Items: 34

1.

The extent of ribosome queuing in budding yeast.

Diament A, Feldman A, Schochet E, Kupiec M, Arava Y, Tuller T.

PLoS Comput Biol. 2018 Jan 29;14(1):e1005951. doi: 10.1371/journal.pcbi.1005951. eCollection 2018 Jan.

2.

Identification and characterization of roles for Puf1 and Puf2 proteins in the yeast response to high calcium.

Haramati O, Brodov A, Yelin I, Atir-Lande A, Samra N, Arava Y.

Sci Rep. 2017 Jun 8;7(1):3037. doi: 10.1038/s41598-017-02873-z.

3.

Localization of Nuclear-Encoded mRNAs to Mitochondria Outer Surface.

Golani-Armon A, Arava Y.

Biochemistry (Mosc). 2016 Oct;81(10):1038-1043. Review.

4.

Novel RNA-Binding Proteins Isolation by the RaPID Methodology.

Samra N, Arava Y.

J Vis Exp. 2016 Sep 30;(115). doi: 10.3791/54467.

5.

The elongation factor eEF3 (Yef3) interacts with mRNA in a translation independent manner.

Samra N, Atir-Lande A, Pnueli L, Arava Y.

BMC Mol Biol. 2015 Sep 24;16:17. doi: 10.1186/s12867-015-0045-5.

6.

Localized translation near the mitochondrial outer membrane: An update.

Lesnik C, Golani-Armon A, Arava Y.

RNA Biol. 2015;12(8):801-9. doi: 10.1080/15476286.2015.1058686. Review.

7.

Corrigendum: OM14 is a mitochondrial receptor for cytosolic ribosomes that supports co-translational import into mitochondria.

Lesnik C, Cohen Y, Atir-Lande A, Schuldiner M, Arava Y.

Nat Commun. 2015 Mar 30;6:6813. doi: 10.1038/ncomms7813. No abstract available.

8.

OM14 is a mitochondrial receptor for cytosolic ribosomes that supports co-translational import into mitochondria.

Lesnik C, Cohen Y, Atir-Lande A, Schuldiner M, Arava Y.

Nat Commun. 2014 Dec 9;5:5711. doi: 10.1038/ncomms6711. Erratum in: Nat Commun. 2015;6:6813.

9.

Overexpression of eukaryotic initiation factor 5 rescues the translational defect of tpk1w in a manner that necessitates a novel phosphorylation site.

Bavli-Kertselli I, Melamed D, Bar-Ziv L, Volf H, Arava Y.

FEBS J. 2015 Feb;282(3):504-20. doi: 10.1111/febs.13158. Epub 2014 Dec 22.

10.
11.

A molecular cryptosystem for images by DNA computing.

Shoshani S, Piran R, Arava Y, Keinan E.

Angew Chem Int Ed Engl. 2012 Mar 19;51(12):2883-7. doi: 10.1002/anie.201107156. Epub 2012 Feb 3. No abstract available.

PMID:
22308004
12.

The protein chaperone Ssa1 affects mRNA localization to the mitochondria.

Eliyahu E, Lesnik C, Arava Y.

FEBS Lett. 2012 Jan 2;586(1):64-9. doi: 10.1016/j.febslet.2011.11.025. Epub 2011 Nov 28.

13.

Divergent RNA binding specificity of yeast Puf2p.

Yosefzon Y, Koh YY, Chritton JJ, Lande A, Leibovich L, Barziv L, Petzold C, Yakhini Z, Mandel-Gutfreund Y, Wickens M, Arava Y.

RNA. 2011 Aug;17(8):1479-88. doi: 10.1261/rna.2700311. Epub 2011 Jun 17.

14.

Genome-wide analysis of RNA extracted from isolated mitochondria.

Eliyahu E, Melamed D, Arava Y.

Methods Mol Biol. 2011;714:287-99. doi: 10.1007/978-1-61779-005-8_18.

PMID:
21431748
15.

SpRET: highly sensitive and reliable spectral measurement of absolute FRET efficiency.

Levy S, Wilms CD, Brumer E, Kahn J, Pnueli L, Arava Y, Eilers J, Gitler D.

Microsc Microanal. 2011 Apr;17(2):176-90. doi: 10.1017/S1431927610094493. Epub 2011 Feb 21.

PMID:
21333032
16.

Asc1 supports cell-wall integrity near bud sites by a Pkc1 independent mechanism.

Melamed D, Bar-Ziv L, Truzman Y, Arava Y.

PLoS One. 2010 Jun 30;5(6):e11389. doi: 10.1371/journal.pone.0011389.

17.

Tom20 mediates localization of mRNAs to mitochondria in a translation-dependent manner.

Eliyahu E, Pnueli L, Melamed D, Scherrer T, Gerber AP, Pines O, Rapaport D, Arava Y.

Mol Cell Biol. 2010 Jan;30(1):284-94. doi: 10.1128/MCB.00651-09.

18.

Compaction of polyribosomal mRNA.

Arava Y.

RNA Biol. 2009 Sep-Oct;6(4):399-401. Epub 2009 Sep 21. Review.

PMID:
19684466
19.

Exploring translation regulation by global analysis of ribosomal association.

Melamed D, Eliyahu E, Arava Y.

Methods. 2009 Jul;48(3):301-5. doi: 10.1016/j.ymeth.2009.04.020. Epub 2009 May 6.

PMID:
19426805
20.

Identification and characterization of extensive intra-molecular associations between 3'-UTRs and their ORFs.

Eldad N, Yosefzon Y, Arava Y.

Nucleic Acids Res. 2008 Dec;36(21):6728-38. doi: 10.1093/nar/gkn754. Epub 2008 Oct 23.

21.

Yeast translational response to high salinity: global analysis reveals regulation at multiple levels.

Melamed D, Pnueli L, Arava Y.

RNA. 2008 Jul;14(7):1337-51. doi: 10.1261/rna.864908. Epub 2008 May 21.

22.

The 3'-UTR mediates the cellular localization of an mRNA encoding a short plasma membrane protein.

Loya A, Pnueli L, Yosefzon Y, Wexler Y, Ziv-Ukelson M, Arava Y.

RNA. 2008 Jul;14(7):1352-65. doi: 10.1261/rna.867208. Epub 2008 May 20.

23.

A ribosomal density-mapping procedure to explore ribosome positions along translating mRNAs.

Eldad N, Arava Y.

Methods Mol Biol. 2008;419:231-42. doi: 10.1007/978-1-59745-033-1_16.

PMID:
18369987
24.

Genome-wide analysis of mRNA polysomal profiles with spotted DNA microarrays.

Melamed D, Arava Y.

Methods Enzymol. 2007;431:177-201. Review.

PMID:
17923236
25.

Detecting ribosomal association with the 5' leader of mRNAs by Ribosome Density Mapping (RDM).

Eldad N, Arava Y.

Methods Enzymol. 2007;431:163-75. Review.

PMID:
17923235
26.
27.

Dissecting eukaryotic translation and its control by ribosome density mapping.

Arava Y, Boas FE, Brown PO, Herschlag D.

Nucleic Acids Res. 2005 Apr 28;33(8):2421-32. Print 2005.

28.
29.

Isolation of polysomal RNA for microarray analysis.

Arava Y.

Methods Mol Biol. 2003;224:79-87. No abstract available.

PMID:
12710667
30.

Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae.

Arava Y, Wang Y, Storey JD, Liu CL, Brown PO, Herschlag D.

Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3889-94. Epub 2003 Mar 26.

31.

GRFbeta, a novel regulator of calcium signaling, is expressed in pancreatic beta cells and brain.

Arava Y, Seger R, Walker MD.

J Biol Chem. 1999 Aug 27;274(35):24449-52.

32.

Specific gene expression in pancreatic beta-cells: cloning and characterization of differentially expressed genes.

Arava Y, Adamsky K, Ezerzer C, Ablamunits V, Walker MD.

Diabetes. 1999 Mar;48(3):552-6.

PMID:
10078555
33.

Differential expression of the protein kinase A regulatory subunit (RIalpha) in pancreatic endocrine cells.

Arava Y, Adamsky K, Belleli A, Shaltiel S, Walker MD.

FEBS Lett. 1998 Mar 20;425(1):24-8.

34.

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